-
1
-
-
0037445309
-
Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil
-
Akasaka, H., Izawa, T., Ueki, K. & Ueki, A. (2003a). Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil. FEMS Microbiol Ecol 43, 149-161.
-
(2003)
FEMS Microbiol Ecol
, vol.43
, pp. 149-161
-
-
Akasaka, H.1
Izawa, T.2
Ueki, K.3
Ueki, A.4
-
2
-
-
0344897060
-
Propionicimonas paludicola gen. nov., sp. nov., a novel facultatively anaerobic, Gram-positive, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil
-
Akasaka, H., Ueki, A., Hanada, S., Kamagata, Y. & Ueki, K. (2003b). Propionicimonas paludicola gen. nov., sp. nov., a novel facultatively anaerobic, Gram-positive, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil. Int J Syst Evol Microbiol 53, 1991-1998.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1991-1998
-
-
Akasaka, H.1
Ueki, A.2
Hanada, S.3
Kamagata, Y.4
Ueki, K.5
-
3
-
-
31144434893
-
Effects of plant residue extract and cobalamin on growth and propionate production of Propionicimonas paludicola isolated from plant residue in irrigated rice field soil
-
Akasaka, H., Ueki, K. & Ueki, A. (2004). Effects of plant residue extract and cobalamin on growth and propionate production of Propionicimonas paludicola isolated from plant residue in irrigated rice field soil. Microbes Environ 19, 112-119.
-
(2004)
Microbes Environ
, vol.19
, pp. 112-119
-
-
Akasaka, H.1
Ueki, K.2
Ueki, A.3
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
0043113323
-
Phenotypic diversity among ruminal isolates of Prevotella ruminicola: Proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola
-
Avgustin, G., Wallace, R. J. & Flint, H. (1997). Phenotypic diversity among ruminal isolates of Prevotella ruminicola: proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola. Int J Syst Bacteriol 47, 284-288.
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 284-288
-
-
Avgustin, G.1
Wallace, R.J.2
Flint, H.3
-
6
-
-
0001778227
-
Biological formation and consumption of methane
-
In Edited by M. A. K. Khalil. Berlin: Springer
-
Boone, R. D. (2000). Biological formation and consumption of methane. In Atmospheric Methane, pp. 42-62. Edited by M. A. K. Khalil. Berlin: Springer.
-
(2000)
Atmospheric Methane
, pp. 42-62
-
-
Boone, R.D.1
-
7
-
-
22744444875
-
Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester
-
Chouari, R., Le Pasiler, D., Daegelen, P., Ginestet, P., Weissenbach, J. & Sghir, A. (2005). Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester. Environ Microbiol 7, 1104-1115.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1104-1115
-
-
Chouari, R.1
Le Pasiler, D.2
Daegelen, P.3
Ginestet, P.4
Weissenbach, J.5
Sghir, A.6
-
8
-
-
0000685441
-
The road map to the Manual
-
In 2nd edn, Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer
-
Garrity, G. M. & Holt, J. G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119-166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
-
(2001)
Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 119-166
-
-
Garrity, G.M.1
Holt, J.G.2
-
9
-
-
0017697675
-
Bacteroides disiens sp. nov. and Bacteroides bivius sp. nov. from human clinical infections
-
Holdeman, L. V. & Johnson, J. L. (1977). Bacteroides disiens sp. nov. and Bacteroides bivius sp. nov. from human clinical infections. Int J Syst Bacteriol 27, 337-345.
-
(1977)
Int J Syst Bacteriol
, vol.27
, pp. 337-345
-
-
Holdeman, L.V.1
Johnson, J.L.2
-
10
-
-
0003535096
-
-
4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University
-
Holdeman, L. V., Cato, E. P. & Moore, W. E. C. (1977). Anaerobe Laboratory Manual, 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University.
-
(1977)
Anaerobe Laboratory Manual
-
-
Holdeman, L.V.1
Cato, E.P.2
Moore, W.E.C.3
-
11
-
-
0002630633
-
Genus I. Bacteroides Castellani and Chalmers 1919, 959
-
In Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins
-
Holdeman, L. V., Kelly, R. W. & Moore, W. E. C. (1984). Genus I. Bacteroides Castellani and Chalmers 1919, 959. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 604-631. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
-
(1984)
Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 604-631
-
-
Holdeman, L.V.1
Kelly, R.W.2
Moore, W.E.C.3
-
13
-
-
0025764192
-
Isolation and characterization of a novel thermophilic Methanosaeta strain
-
Kamagata, Y. & Mikami, E. (1991). Isolation and characterization of a novel thermophilic Methanosaeta strain. Int J Syst Bacteriol 41, 191-196.
-
(1991)
Int J Syst Bacteriol
, vol.41
, pp. 191-196
-
-
Kamagata, Y.1
Mikami, E.2
-
15
-
-
77956800518
-
Lipid and cell-wall analysis in bacterial systematics
-
Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
-
(1987)
Methods Microbiol
, vol.19
, pp. 161-207
-
-
Komagata, K.1
Suzuki, K.2
-
16
-
-
0036671350
-
Dysgonomonas mossii sp. nov., from human sources
-
Lawson, P. A., Falsen, E., Inganas, E., Weyant R. S. & Collins, M. D. (2002). Dysgonomonas mossii sp. nov., from human sources. Syst Appl Microbiol 25, 194-197.
-
(2002)
Syst Appl Microbiol
, vol.25
, pp. 194-197
-
-
Lawson, P.A.1
Falsen, E.2
Inganas, E.3
Weyant, R.S.4
Collins, M.D.5
-
17
-
-
0037133754
-
Effects of porphyrins and inorganic iron on the growth of Prevotella intermedia
-
Leung, K.-P. & Folk, S. P. (2002). Effects of porphyrins and inorganic iron on the growth of Prevotella intermedia. FEMS Microbiol Lett 209, 15-29.
-
(2002)
FEMS Microbiol Lett
, vol.209
, pp. 15-29
-
-
Leung, K.-P.1
Folk, S.P.2
-
18
-
-
15244358133
-
A population survey of members of the phylum Bacteroidetes isolated from salt marsh sediments along the east coast of the United States
-
Lydell, C., Dowell, L., Sikaroodi, M., Gillevet, P. & Emerson, D. (2004). A population survey of members of the phylum Bacteroidetes isolated from salt marsh sediments along the east coast of the United States. Microb Ecol 48, 263-273.
-
(2004)
Microb Ecol
, vol.48
, pp. 263-273
-
-
Lydell, C.1
Dowell, L.2
Sikaroodi, M.3
Gillevet, P.4
Emerson, D.5
-
19
-
-
0019982011
-
Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids
-
Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids. J Clin Microbiol 16, 584-586.
-
(1982)
J Clin Microbiol
, vol.16
, pp. 584-586
-
-
Miller, L.T.1
-
20
-
-
0018423505
-
Cellular fatty acid composition in Gram-negative obligately anaerobic rods
-
Miyagawa, E., Azuma, R. & Suto, E. (1979). Cellular fatty acid composition in Gram-negative obligately anaerobic rods. J Gen Appl Microbiol 25, 41-51.
-
(1979)
J Gen Appl Microbiol
, vol.25
, pp. 41-51
-
-
Miyagawa, E.1
Azuma, R.2
Suto, E.3
-
21
-
-
0028230078
-
Comparative distribution and taxonomic value of cellular fatty acids in thirty-three genera of anaerobic Gram-negative bacilli
-
Moore, L. V. H., Bourne, D. M. & Moore, W. E. C. (1994). Comparative distribution and taxonomic value of cellular fatty acids in thirty-three genera of anaerobic Gram-negative bacilli. Int J Syst Bacteriol 44, 338-347.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 338-347
-
-
Moore, L.V.H.1
Bourne, D.M.2
Moore, W.E.C.3
-
22
-
-
0028118435
-
Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria
-
Paster, B. J., Dewhirst, F. E., Olsen, I. & Fraser, G. J. (1994). Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria. J Bacteriol 176, 725-732.
-
(1994)
J Bacteriol
, vol.176
, pp. 725-732
-
-
Paster, B.J.1
Dewhirst, F.E.2
Olsen, I.3
Fraser, G.J.4
-
23
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
24
-
-
2942683033
-
Prevotella shahii sp. nov. and Prevotella salivae isolated from the human oral cavity
-
Sakamoto, M., Suzuki, M., Huang, Y., Umeda, M., Ishikawa, I. & Benno, Y. (2004). Prevotella shahii sp. nov. and Prevotella salivae isolated from the human oral cavity. Int J Syst Evol Microbiol 54, 877-883.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 877-883
-
-
Sakamoto, M.1
Suzuki, M.2
Huang, Y.3
Umeda, M.4
Ishikawa, I.5
Benno, Y.6
-
25
-
-
16844378442
-
Prevotella multiformis sp. nov., isolated form human subgingival plaque
-
Sakamoto, M., Huang, Y., Umeda, M., Ishikawa, I. & Benno, Y. (2005). Prevotella multiformis sp. nov., isolated form human subgingival plaque. Int J Syst Evol Microbiol 55, 815-819.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 815-819
-
-
Sakamoto, M.1
Huang, Y.2
Umeda, M.3
Ishikawa, I.4
Benno, Y.5
-
26
-
-
0036824149
-
Physiological properties and phylogenetic affiliations of anaerobic bacteria isolated from roots of rice plants cultivated on a paddy field
-
Satoh, A., Watanabe, M., Ueki, A. & Ueki, K. (2002). Physiological properties and phylogenetic affiliations of anaerobic bacteria isolated from roots of rice plants cultivated on a paddy field. Anaerobe 8, 233-246.
-
(2002)
Anaerobe
, vol.8
, pp. 233-246
-
-
Satoh, A.1
Watanabe, M.2
Ueki, A.3
Ueki, K.4
-
27
-
-
34250143148
-
Methane emission from rice paddies
-
Seiler, W., Holzapfel-Pschorn, A., Conrad, R. & Scharffe, D. (1984). Methane emission from rice paddies. J Atmos Chem 1, 241-268.
-
(1984)
J Atmos Chem
, vol.1
, pp. 241-268
-
-
Seiler, W.1
Holzapfel-Pschorn, A.2
Conrad, R.3
Scharffe, D.4
-
28
-
-
0018874185
-
Fatty acid and isoprenoid quinone composition in the classification of Bacteroides melaninogenicus and related taxa
-
Shah, H. N. & Collins, D. M. (1980). Fatty acid and isoprenoid quinone composition in the classification of Bacteroides melaninogenicus and related taxa. J Appl Bacteriol 48, 75-87.
-
(1980)
J Appl Bacteriol
, vol.48
, pp. 75-87
-
-
Shah, H.N.1
Collins, D.M.2
-
29
-
-
0024529810
-
Proposal to restrict the genus Bacteroides (Castellani and Chalmers) to Bacteroides fragilis and closely related species
-
Shah, H. N. & Collins, D. M. (1989). Proposal to restrict the genus Bacteroides (Castellani and Chalmers) to Bacteroides fragilis and closely related species. Int J Syst Bacteriol 39, 85-87.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 85-87
-
-
Shah, H.N.1
Collins, D.M.2
-
30
-
-
0025344613
-
Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides
-
Shah, H. N. & Collins, D. M. (1990). Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides. Int J Syst Bacteriol 40, 205-208.
-
(1990)
Int J Syst Bacteriol
, vol.40
, pp. 205-208
-
-
Shah, H.N.1
Collins, D.M.2
-
31
-
-
0021945639
-
Bacteroides oulorum sp. nov., a non-pigmented saccharolytic species from the oral cavity
-
Shah, H. N., Collins, D. M., Watabe, J. & Mitsuoka, T. (1985). Bacteroides oulorum sp. nov., a non-pigmented saccharolytic species from the oral cavity. Int J Syst Bacteriol 35, 193-197.
-
(1985)
Int J Syst Bacteriol
, vol.35
, pp. 193-197
-
-
Shah, H.N.1
Collins, D.M.2
Watabe, J.3
Mitsuoka, T.4
-
32
-
-
7844248080
-
The mechanism of methane fermentation in flooded paddy soil
-
Takai, Y. (1970). The mechanism of methane fermentation in flooded paddy soil. Soil Sci Plant Nutr 6, 238-244.
-
(1970)
Soil Sci Plant Nutr
, vol.6
, pp. 238-244
-
-
Takai, Y.1
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
0018718715
-
Cellular fatty acid composition of sulfate-reducing bacteria
-
Ueki, A. & Suto, T. (1979). Cellular fatty acid composition of sulfate-reducing bacteria. J Gen Appl Microbiol 25, 185-196.
-
(1979)
J Gen Appl Microbiol
, vol.25
, pp. 185-196
-
-
Ueki, A.1
Suto, T.2
-
35
-
-
0013190054
-
Sulfate reduction in the anaerobic digestion of animal waste
-
Ueki, A., Matsuda, K & Ohtsuki, C. (1986). Sulfate reduction in the anaerobic digestion of animal waste. J Gen Appl Microbiol 32, 111-123.
-
(1986)
J Gen Appl Microbiol
, vol.32
, pp. 111-123
-
-
Ueki, A.1
Matsuda, K.2
Ohtsuki, C.3
-
36
-
-
0033920356
-
Seasonal variations in vertical distribution of methanogenic activity and Fe(II) content and relationship between them in wetland rice field soil
-
Ueki, A., Kainuma, Y., Fujii, H. & Ueki, K. (2000). Seasonal variations in vertical distribution of methanogenic activity and Fe(II) content and relationship between them in wetland rice field soil. Soil Sci Plant Nutr 46, 401-415.
-
(2000)
Soil Sci Plant Nutr
, vol.46
, pp. 401-415
-
-
Ueki, A.1
Kainuma, Y.2
Fujii, H.3
Ueki, K.4
-
37
-
-
31144439293
-
Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan
-
Ueki, A., Akasaka, H., Suzuki, D. & Ueki, K. (2006). Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan. Int J Syst Evol Microbiol 56, 39-44.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 39-44
-
-
Ueki, A.1
Akasaka, H.2
Suzuki, D.3
Ueki, K.4
-
38
-
-
0034527790
-
Characterization of methane emissions from rice fields in Asia. I. Comparison among field sites in five countries
-
Wassmann, R., Neue, H. U., Lantin, R. S., Buendia, L. V. & Rennenberg, H. (2000a). Characterization of methane emissions from rice fields in Asia. I. Comparison among field sites in five countries. Nutr Cycl Agroecosys 58, 1-12.
-
(2000)
Nutr Cycl Agroecosys
, vol.58
, pp. 1-12
-
-
Wassmann, R.1
Neue, H.U.2
Lantin, R.S.3
Buendia, L.V.4
Rennenberg, H.5
-
39
-
-
0034527933
-
Characterization of methane emissions from rice fields in Asia. II. Differences among irrigated, rainfed, and deepwater rice
-
Wassmann, R., Neue, H. U., Lantin, R. S., Makarim, K., Chareonsilp, N., Buendia, L. V. & Rennenberg, H. (2000b). Characterization of methane emissions from rice fields in Asia. II. Differences among irrigated, rainfed, and deepwater rice. Nutr Cycl Agroecosys 58, 13-22.
-
(2000)
Nutr Cycl Agroecosys
, vol.58
, pp. 13-22
-
-
Wassmann, R.1
Neue, H.U.2
Lantin, R.S.3
Makarim, K.4
Chareonsilp, N.5
Buendia, L.V.6
Rennenberg, H.7
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