메뉴 건너뛰기




Volumn 10, Issue , 2009, Pages

The high throughput sequence annotation service (HT-SAS) - The shortcut from sequence to true Medline words

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC ANNOTATION; AUTOMATIC APPROACHES; HIGH THROUGHPUT; HIGH THROUGHPUT EXPERIMENTS; HIGH-THROUGHPUT TECHNOLOGIES; HOMOLOGOUS PROTEINS; INFORMATION SOURCES; MODERN BIOLOGY;

EID: 67649622659     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-148     Document Type: Article
Times cited : (5)

References (32)
  • 2
    • 33846041078 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt)
    • 35 Database 1669721 17142230 10.1093/nar/gkl929
    • Consortium U The Universal Protein Resource (UniProt) Nucleic Acids Res 2007, 35 Database D193-197. 1669721 17142230 10.1093/nar/gkl929
    • (2007) Nucleic Acids Res
    • Consortium, U.1
  • 4
  • 5
    • 58349111875 scopus 로고    scopus 로고
    • AmiGO: Online access to ontology and annotation data
    • 2639003 19033274 10.1093/bioinformatics/btn615
    • Carbon S Ireland A Mungall C Shu S Marshall B Lewis S AmiGO: Online access to ontology and annotation data Bioinformatics 2009, 25(2):288-289. 2639003 19033274 10.1093/bioinformatics/btn615
    • (2009) Bioinformatics , vol.25 , Issue.2 , pp. 288-289
    • Carbon, S.1    Ireland, A.2    Mungall, C.3    Shu, S.4    Marshall, B.5    Lewis, S.6
  • 7
    • 24044446835 scopus 로고    scopus 로고
    • A semantic analysis of the annotations of the human genome
    • 2435251 15955782 10.1093/bioinformatics/bti538
    • Khatri P Done B Rao A Done A Draghici S A semantic analysis of the annotations of the human genome Bioinformatics 2005, 21(16):3416-3421. 2435251 15955782 10.1093/bioinformatics/bti538
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3416-3421
    • Khatri, P.1    Done, B.2    Rao, A.3    Done, A.4    Draghici, S.5
  • 8
    • 45549107329 scopus 로고    scopus 로고
    • Use and misuse of the gene ontology annotations
    • 10.1038/nrg2363 18475267
    • Rhee S Wood V Dolinski K Draghici S Use and misuse of the gene ontology annotations Nat Rev Genet 2008, 9(7):509-515. 10.1038/nrg2363 18475267
    • (2008) Nat Rev Genet , vol.9 , Issue.7 , pp. 509-515
    • Rhee, S.1    Wood, V.2    Dolinski, K.3    Draghici, S.4
  • 9
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • 10.1093/bioinformatics/bti610 16081474
    • Conesa A Götz S García-Gómez J Terol J Talón M Robles M Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research Bioinformatics 2005, 21(18):3674-3676. 10.1093/bioinformatics/bti610 16081474
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 10
    • 34547588704 scopus 로고    scopus 로고
    • KAAS: An automatic genome annotation and pathway reconstruction server
    • 35 Web Server 1933193 17526522 10.1093/nar/gkm321
    • Moriya Y Itoh M Okuda S Yoshizawa A Kanehisa M KAAS: An automatic genome annotation and pathway reconstruction server Nucleic Acids Res 2007, 35 Web Server W182-185. 1933193 17526522 10.1093/nar/gkm321
    • (2007) Nucleic Acids Res
    • Moriya, Y.1    Itoh, M.2    Okuda, S.3    Yoshizawa, A.4    Kanehisa, M.5
  • 11
    • 33645107704 scopus 로고    scopus 로고
    • Automatic assignment of biomedical categories: Toward a generic approach
    • 10.1093/bioinformatics/bti783 16287934
    • Ruch P Automatic assignment of biomedical categories: Toward a generic approach Bioinformatics 2006, 22(6):658-664. 10.1093/bioinformatics/ bti783 16287934
    • (2006) Bioinformatics , vol.22 , Issue.6 , pp. 658-664
    • Ruch, P.1
  • 13
    • 45749086922 scopus 로고    scopus 로고
    • Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text
    • 2320932 18437221
    • Gaudan S Jimeno Yepes A Lee V Rebholz-Schuhmann D Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text EURASIP J Bioinform Syst Biol 2008, 342746. 2320932 18437221
    • (2008) EURASIP J Bioinform Syst Biol , pp. 342746
    • Gaudan, S.1    Jimeno Yepes, A.2    Lee, V.3    Rebholz-Schuhmann, D.4
  • 14
    • 51049084462 scopus 로고    scopus 로고
    • Evaluation of text-mining systems for biology: Overview of the Second BioCreative community challenge
    • 2559980 18834487 10.1186/gb-2008-9-s2-s1
    • Krallinger M Morgan A Smith L Leitner F Tanabe L Wilbur J Hirschman L Valencia A Evaluation of text-mining systems for biology: Overview of the Second BioCreative community challenge Genome Biol 2008, 9(Suppl 2):S1. 2559980 18834487 10.1186/gb-2008-9-s2-s1
    • (2008) Genome Biol , vol.9 , Issue.SUPPL. 2
    • Krallinger, M.1    Morgan, A.2    Smith, L.3    Leitner, F.4    Tanabe, L.5    Wilbur, J.6    Hirschman, L.7    Valencia, A.8
  • 15
    • 0038522873 scopus 로고    scopus 로고
    • GeneMerge - Post-genomic analysis, data mining, and hypothesis testing
    • 10.1093/bioinformatics/btg114 12724301
    • Castillo-Davis C Hartl D GeneMerge - post-genomic analysis, data mining, and hypothesis testing Bioinformatics 2003, 19(7):891-892. 10.1093/ bioinformatics/btg114 12724301
    • (2003) Bioinformatics , vol.19 , Issue.7 , pp. 891-892
    • Castillo-Davis, C.1    Hartl, D.2
  • 17
    • 33644877451 scopus 로고    scopus 로고
    • SMART 5: Domains in the context of genomes and networks
    • 34 Database 1347442 16381859 10.1093/nar/gkj079
    • Letunic I Copley R Pils B Pinkert S Schultz J Bork P SMART 5: Domains in the context of genomes and networks Nucleic Acids Res 2006, 34 Database D257-260. 1347442 16381859 10.1093/nar/gkj079
    • (2006) Nucleic Acids Res
    • Letunic, I.1    Copley, R.2    Pils, B.3    Pinkert, S.4    Schultz, J.5    Bork, P.6
  • 20
    • 33747839468 scopus 로고    scopus 로고
    • ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    • 34 Web Server 1538847 16845026 10.1093/nar/gkl124
    • de Castro E Sigrist C Gattiker A Bulliard V Langendijk-Genevaux P Gasteiger E Bairoch A Hulo N ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins Nucleic Acids Res 2006 34 Web Server W362 365 1538847 16845026 10.1093/nar/gkl124
    • (2006) Nucleic Acids Res
    • de Castro, E.1    Sigrist, C.2    Gattiker, A.3    Bulliard, V.4    Langendijk-Genevaux, P.5    Gasteiger, E.6    Bairoch, A.7    Hulo, N.8
  • 22
    • 48249125808 scopus 로고    scopus 로고
    • Integrating protein-protein interactions and text mining for protein function prediction
    • 2500093 18673526 10.1186/1471-2105-9-S8-S2
    • Jaeger S Gaudan S Leser U Rebholz-Schuhmann D Integrating protein-protein interactions and text mining for protein function prediction BMC Bioinformatics 2008, 9(Suppl 8):S2. 2500093 18673526 10.1186/1471-2105-9-S8-S2
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL. 8
    • Jaeger, S.1    Gaudan, S.2    Leser, U.3    Rebholz-Schuhmann, D.4
  • 23
    • 41949141883 scopus 로고    scopus 로고
    • e-LiSe - An online tool for finding needles in the '(Medline) haystack'
    • 10.1093/bioinformatics/btn086 18321884
    • Gladki A Siedlecki P Kaczanowski S Zielenkiewicz P e-LiSe - an online tool for finding needles in the '(Medline) haystack' Bioinformatics 2008, 24(8):1115-1117. 10.1093/bioinformatics/btn086 18321884
    • (2008) Bioinformatics , vol.24 , Issue.8 , pp. 1115-1117
    • Gladki, A.1    Siedlecki, P.2    Kaczanowski, S.3    Zielenkiewicz, P.4
  • 25
    • 0347724162 scopus 로고    scopus 로고
    • MedBlast: Searching articles related to a biological sequence
    • 10.1093/bioinformatics/btg375 14693811
    • Tu Q Tang H Ding D MedBlast: Searching articles related to a biological sequence Bioinformatics 2004, 20(1):75-77. 10.1093/bioinformatics/btg375 14693811
    • (2004) Bioinformatics , vol.20 , Issue.1 , pp. 75-77
    • Tu, Q.1    Tang, H.2    Ding, D.3
  • 26
    • 27944477366 scopus 로고    scopus 로고
    • METIS: Multiple extraction techniques for informative sentences
    • 10.1093/bioinformatics/bti675 16159915
    • Mitchell A Divoli A Kim J Hilario M Selimas I Attwood T METIS: Multiple extraction techniques for informative sentences Bioinformatics 2005, 21(22):4196-4197. 10.1093/bioinformatics/bti675 16159915
    • (2005) Bioinformatics , vol.21 , Issue.22 , pp. 4196-4197
    • Mitchell, A.1    Divoli, A.2    Kim, J.3    Hilario, M.4    Selimas, I.5    Attwood, T.6
  • 27
    • 18744396693 scopus 로고    scopus 로고
    • BioIE: Extracting informative sentences from the biomedical literature
    • 10.1093/bioinformatics/bti296 15691860
    • Divoli A Attwood T BioIE: Extracting informative sentences from the biomedical literature Bioinformatics 2005, 21(9):2138-2139. 10.1093/ bioinformatics/bti296 15691860
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2138-2139
    • Divoli, A.1    Attwood, T.2
  • 29
    • 84953744816 scopus 로고
    • A Statistical Interpretation of Term Specificity and its Application in Retrieval"
    • 10.1108/eb026526
    • Sparck Jones K A Statistical Interpretation of Term Specificity and its Application in Retrieval" Journal of Documentation 1972, 28(1):11-21. 10.1108/eb026526
    • (1972) Journal of Documentation , vol.28 , Issue.1 , pp. 11-21
    • Sparck Jones, K.1
  • 31
    • 20444405371 scopus 로고    scopus 로고
    • Proteome analysis of separated male and female gametocytes reveals novel sex-specific Plasmodium biology
    • 10.1016/j.cell.2005.03.027 15935755
    • Khan SM Franke-Fayard B Mair GR Lasonder E Janse CJ Mann M Waters AP Proteome analysis of separated male and female gametocytes reveals novel sex-specific Plasmodium biology Cell 2005, 121(5):675-87. 10.1016/ j.cell.2005.03.027 15935755
    • (2005) Cell , vol.121 , Issue.5 , pp. 675-687
    • Khan, S.M.1    Franke-Fayard, B.2    Mair, G.R.3    Lasonder, E.4    Janse, C.J.5    Mann, M.6    Waters, A.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.