-
1
-
-
58149199579
-
FlyBase: Enhancing Drosophila Gene Ontology annotations
-
37 Database 10.1093/nar/gkn788 18948289
-
Tweedie S Ashburner M Falls K Leyland P McQuilton P Marygold S Millburn G Osumi-Sutherland D Schroeder A Seal R et al FlyBase: Enhancing Drosophila Gene Ontology annotations Nucleic Acids Res 2009, 37 Database D555-559. 10.1093/nar/gkn788 18948289
-
(2009)
Nucleic Acids Res
-
-
Tweedie, S.1
Ashburner, M.2
Falls, K.3
Leyland, P.4
McQuilton, P.5
Marygold, S.6
Millburn, G.7
Osumi-Sutherland, D.8
Schroeder, A.9
Seal, R.10
-
2
-
-
33846041078
-
The Universal Protein Resource (UniProt)
-
35 Database 1669721 17142230 10.1093/nar/gkl929
-
Consortium U The Universal Protein Resource (UniProt) Nucleic Acids Res 2007, 35 Database D193-197. 1669721 17142230 10.1093/nar/gkl929
-
(2007)
Nucleic Acids Res
-
-
Consortium, U.1
-
3
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556 10802651
-
Ashburner M Ball C Blake J Botstein D Butler H Cherry J Davis A Dolinski K Dwight S Eppig J et al Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium Nat Genet 2000, 25(1):25-29. 10.1038/75556 10802651
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.2
Blake, J.3
Botstein, D.4
Butler, H.5
Cherry, J.6
Davis, A.7
Dolinski, K.8
Dwight, S.9
Eppig, J.10
-
5
-
-
58349111875
-
AmiGO: Online access to ontology and annotation data
-
2639003 19033274 10.1093/bioinformatics/btn615
-
Carbon S Ireland A Mungall C Shu S Marshall B Lewis S AmiGO: Online access to ontology and annotation data Bioinformatics 2009, 25(2):288-289. 2639003 19033274 10.1093/bioinformatics/btn615
-
(2009)
Bioinformatics
, vol.25
, Issue.2
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.3
Shu, S.4
Marshall, B.5
Lewis, S.6
-
6
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
36 Database 2238879 18077471
-
Kanehisa M Araki M Goto S Hattori M Hirakawa M Itoh M Katayama T Kawashima S Okuda S Tokimatsu T et al KEGG for linking genomes to life and the environment Nucleic Acids Res 2008, 36 Database D480-484. 2238879 18077471
-
(2008)
Nucleic Acids Res
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
-
7
-
-
24044446835
-
A semantic analysis of the annotations of the human genome
-
2435251 15955782 10.1093/bioinformatics/bti538
-
Khatri P Done B Rao A Done A Draghici S A semantic analysis of the annotations of the human genome Bioinformatics 2005, 21(16):3416-3421. 2435251 15955782 10.1093/bioinformatics/bti538
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3416-3421
-
-
Khatri, P.1
Done, B.2
Rao, A.3
Done, A.4
Draghici, S.5
-
8
-
-
45549107329
-
Use and misuse of the gene ontology annotations
-
10.1038/nrg2363 18475267
-
Rhee S Wood V Dolinski K Draghici S Use and misuse of the gene ontology annotations Nat Rev Genet 2008, 9(7):509-515. 10.1038/nrg2363 18475267
-
(2008)
Nat Rev Genet
, vol.9
, Issue.7
, pp. 509-515
-
-
Rhee, S.1
Wood, V.2
Dolinski, K.3
Draghici, S.4
-
9
-
-
24644503098
-
Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
10.1093/bioinformatics/bti610 16081474
-
Conesa A Götz S García-Gómez J Terol J Talón M Robles M Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research Bioinformatics 2005, 21(18):3674-3676. 10.1093/bioinformatics/bti610 16081474
-
(2005)
Bioinformatics
, vol.21
, Issue.18
, pp. 3674-3676
-
-
Conesa, A.1
Götz, S.2
García-Gómez, J.3
Terol, J.4
Talón, M.5
Robles, M.6
-
10
-
-
34547588704
-
KAAS: An automatic genome annotation and pathway reconstruction server
-
35 Web Server 1933193 17526522 10.1093/nar/gkm321
-
Moriya Y Itoh M Okuda S Yoshizawa A Kanehisa M KAAS: An automatic genome annotation and pathway reconstruction server Nucleic Acids Res 2007, 35 Web Server W182-185. 1933193 17526522 10.1093/nar/gkm321
-
(2007)
Nucleic Acids Res
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.4
Kanehisa, M.5
-
11
-
-
33645107704
-
Automatic assignment of biomedical categories: Toward a generic approach
-
10.1093/bioinformatics/bti783 16287934
-
Ruch P Automatic assignment of biomedical categories: Toward a generic approach Bioinformatics 2006, 22(6):658-664. 10.1093/bioinformatics/ bti783 16287934
-
(2006)
Bioinformatics
, vol.22
, Issue.6
, pp. 658-664
-
-
Ruch, P.1
-
12
-
-
34248361071
-
GOAnnotator: Linking protein GO annotations to evidence text
-
1769513 17181854 10.1186/1747-5333-1-19
-
Couto FM Silva MJ Lee V Dimmer E Camon E Apweiler R Kirsch H Rebholz-Schuhmann D GOAnnotator: Linking protein GO annotations to evidence text J Biomed Discov Collab 2006, 1:19. 1769513 17181854 10.1186/1747-5333-1-19
-
(2006)
J Biomed Discov Collab
, vol.1
, pp. 19
-
-
Couto, F.M.1
Silva, M.J.2
Lee, V.3
Dimmer, E.4
Camon, E.5
Apweiler, R.6
Kirsch, H.7
Rebholz-Schuhmann, D.8
-
13
-
-
45749086922
-
Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text
-
2320932 18437221
-
Gaudan S Jimeno Yepes A Lee V Rebholz-Schuhmann D Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text EURASIP J Bioinform Syst Biol 2008, 342746. 2320932 18437221
-
(2008)
EURASIP J Bioinform Syst Biol
, pp. 342746
-
-
Gaudan, S.1
Jimeno Yepes, A.2
Lee, V.3
Rebholz-Schuhmann, D.4
-
14
-
-
51049084462
-
Evaluation of text-mining systems for biology: Overview of the Second BioCreative community challenge
-
2559980 18834487 10.1186/gb-2008-9-s2-s1
-
Krallinger M Morgan A Smith L Leitner F Tanabe L Wilbur J Hirschman L Valencia A Evaluation of text-mining systems for biology: Overview of the Second BioCreative community challenge Genome Biol 2008, 9(Suppl 2):S1. 2559980 18834487 10.1186/gb-2008-9-s2-s1
-
(2008)
Genome Biol
, vol.9
, Issue.SUPPL. 2
-
-
Krallinger, M.1
Morgan, A.2
Smith, L.3
Leitner, F.4
Tanabe, L.5
Wilbur, J.6
Hirschman, L.7
Valencia, A.8
-
15
-
-
0038522873
-
GeneMerge - Post-genomic analysis, data mining, and hypothesis testing
-
10.1093/bioinformatics/btg114 12724301
-
Castillo-Davis C Hartl D GeneMerge - post-genomic analysis, data mining, and hypothesis testing Bioinformatics 2003, 19(7):891-892. 10.1093/ bioinformatics/btg114 12724301
-
(2003)
Bioinformatics
, vol.19
, Issue.7
, pp. 891-892
-
-
Castillo-Davis, C.1
Hartl, D.2
-
16
-
-
33750713346
-
GeneTools - Application for functional annotation and statistical hypothesis testing
-
1630634 17062145 10.1186/1471-2105-7-470
-
Beisvag V Jünge F Bergum H Jølsum L Lydersen S Günther C Ramampiaro H Langaas M Sandvik A Laegreid A GeneTools - application for functional annotation and statistical hypothesis testing BMC Bioinformatics 2006, 7:470. 1630634 17062145 10.1186/1471-2105-7-470
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 470
-
-
Beisvag, V.1
Jünge, F.2
Bergum, H.3
Jølsum, L.4
Lydersen, S.5
Günther, C.6
Ramampiaro, H.7
Langaas, M.8
Sandvik, A.9
Laegreid, A.10
-
18
-
-
38549146894
-
The Pfam protein families database
-
2008 2238907 18039703 10.1093/nar/gkm960
-
Finn R Tate J Mistry J Coggill P Sammut S Hotz H Ceric G Forslund K Eddy S Sonnhammer E et al The Pfam protein families database Nucleic Acids Res 2007, 36:D281-D288. 2008 2238907 18039703 10.1093/nar/gkm960
-
(2007)
Nucleic Acids Res
, vol.36
-
-
Finn, R.1
Tate, J.2
Mistry, J.3
Coggill, P.4
Sammut, S.5
Hotz, H.6
Ceric, G.7
Forslund, K.8
Eddy, S.9
Sonnhammer, E.10
-
21
-
-
33846116032
-
New developments in the InterPro database
-
35 Database 1899100 17202162 10.1093/nar/gkl841
-
Mulder N Apweiler R Attwood T Bairoch A Bateman A Binns D Bork P Buillard V Cerutti L Copley R et al New developments in the InterPro database Nucleic Acids Res 2007, 35 Database D224-228. 1899100 17202162 10.1093/nar/gkl841
-
(2007)
Nucleic Acids Res
-
-
Mulder, N.1
Apweiler, R.2
Attwood, T.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bork, P.7
Buillard, V.8
Cerutti, L.9
Copley, R.10
-
22
-
-
48249125808
-
Integrating protein-protein interactions and text mining for protein function prediction
-
2500093 18673526 10.1186/1471-2105-9-S8-S2
-
Jaeger S Gaudan S Leser U Rebholz-Schuhmann D Integrating protein-protein interactions and text mining for protein function prediction BMC Bioinformatics 2008, 9(Suppl 8):S2. 2500093 18673526 10.1186/1471-2105-9-S8-S2
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 8
-
-
Jaeger, S.1
Gaudan, S.2
Leser, U.3
Rebholz-Schuhmann, D.4
-
23
-
-
41949141883
-
e-LiSe - An online tool for finding needles in the '(Medline) haystack'
-
10.1093/bioinformatics/btn086 18321884
-
Gladki A Siedlecki P Kaczanowski S Zielenkiewicz P e-LiSe - an online tool for finding needles in the '(Medline) haystack' Bioinformatics 2008, 24(8):1115-1117. 10.1093/bioinformatics/btn086 18321884
-
(2008)
Bioinformatics
, vol.24
, Issue.8
, pp. 1115-1117
-
-
Gladki, A.1
Siedlecki, P.2
Kaczanowski, S.3
Zielenkiewicz, P.4
-
24
-
-
33846664313
-
EBIMed - Text crunching to gather facts for proteins from Medline
-
10.1093/bioinformatics/btl302
-
Rebholz-Schuhmann D Kirsch H Arregui M Gaudan S Riethoven M Stoehr P EBIMed - text crunching to gather facts for proteins from Medline Bioinformatics 2007, 23(2):37-44. 10.1093/bioinformatics/btl302
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 37-44
-
-
Rebholz-Schuhmann, D.1
Kirsch, H.2
Arregui, M.3
Gaudan, S.4
Riethoven, M.5
Stoehr, P.6
-
25
-
-
0347724162
-
MedBlast: Searching articles related to a biological sequence
-
10.1093/bioinformatics/btg375 14693811
-
Tu Q Tang H Ding D MedBlast: Searching articles related to a biological sequence Bioinformatics 2004, 20(1):75-77. 10.1093/bioinformatics/btg375 14693811
-
(2004)
Bioinformatics
, vol.20
, Issue.1
, pp. 75-77
-
-
Tu, Q.1
Tang, H.2
Ding, D.3
-
26
-
-
27944477366
-
METIS: Multiple extraction techniques for informative sentences
-
10.1093/bioinformatics/bti675 16159915
-
Mitchell A Divoli A Kim J Hilario M Selimas I Attwood T METIS: Multiple extraction techniques for informative sentences Bioinformatics 2005, 21(22):4196-4197. 10.1093/bioinformatics/bti675 16159915
-
(2005)
Bioinformatics
, vol.21
, Issue.22
, pp. 4196-4197
-
-
Mitchell, A.1
Divoli, A.2
Kim, J.3
Hilario, M.4
Selimas, I.5
Attwood, T.6
-
27
-
-
18744396693
-
BioIE: Extracting informative sentences from the biomedical literature
-
10.1093/bioinformatics/bti296 15691860
-
Divoli A Attwood T BioIE: Extracting informative sentences from the biomedical literature Bioinformatics 2005, 21(9):2138-2139. 10.1093/ bioinformatics/bti296 15691860
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2138-2139
-
-
Divoli, A.1
Attwood, T.2
-
29
-
-
84953744816
-
A Statistical Interpretation of Term Specificity and its Application in Retrieval"
-
10.1108/eb026526
-
Sparck Jones K A Statistical Interpretation of Term Specificity and its Application in Retrieval" Journal of Documentation 1972, 28(1):11-21. 10.1108/eb026526
-
(1972)
Journal of Documentation
, vol.28
, Issue.1
, pp. 11-21
-
-
Sparck Jones, K.1
-
31
-
-
20444405371
-
Proteome analysis of separated male and female gametocytes reveals novel sex-specific Plasmodium biology
-
10.1016/j.cell.2005.03.027 15935755
-
Khan SM Franke-Fayard B Mair GR Lasonder E Janse CJ Mann M Waters AP Proteome analysis of separated male and female gametocytes reveals novel sex-specific Plasmodium biology Cell 2005, 121(5):675-87. 10.1016/ j.cell.2005.03.027 15935755
-
(2005)
Cell
, vol.121
, Issue.5
, pp. 675-687
-
-
Khan, S.M.1
Franke-Fayard, B.2
Mair, G.R.3
Lasonder, E.4
Janse, C.J.5
Mann, M.6
Waters, A.P.7
-
32
-
-
58149178569
-
PlasmoDB: A functional genomic database for malaria parasites
-
37 Database 10.1093/nar/gkn814 18957442
-
Aurrecoechea C Brestelli J Brunk B Dommer J Fischer S Gajria B Gao X Gingle A Grant G Harb O et al PlasmoDB: A functional genomic database for malaria parasites Nucleic Acids Res 2009, 37 Database D539-543. 10.1093/nar/gkn814 18957442
-
(2009)
Nucleic Acids Res
-
-
Aurrecoechea, C.1
Brestelli, J.2
Brunk, B.3
Dommer, J.4
Fischer, S.5
Gajria, B.6
Gao, X.7
Gingle, A.8
Grant, G.9
Harb, O.10
|