Gene expression profiling of copper-induced responses in the intertidal copepod Tigriopus japonicus using a 6K oligochip microarray

Aquatic Toxicology

Volumn 93, Issue 4, 2009, Pages 177-187

  Ki, Jang Seu ^a   Raisuddin, Sheikh ^a   Lee, Kyun Woo ^a   Hwang, Dae Sik ^a   Han, Jeonghoon ^a   Rhee, Jae Sung ^a   Kim, Il Chan ^b   Park, Heum Gi ^c   Ryu, Jae Chun ^d   Lee, Jae Seong ^a  

^a Hanyang University   (South Korea)

^b Korea Research Institute of Ships and Ocean Engineering   (South Korea)

^c Gangneung Wonju National University   (South Korea)

^d Korea Institute of Science and Technology   (South Korea)

Author keywords

Ecotoxicogenomics; Environmental risk assessment; mRNA expression; Tigriopus japonicus oligochip; Trace metals

Indexed keywords

COPPER; CYTOCHROME P450; MESSENGER RNA;

COPPER; CRUSTACEAN; ECOTOXICOLOGY; ENVIRONMENTAL RISK; GENE EXPRESSION; POLLUTION EFFECT; RISK ASSESSMENT; RNA; TRACE METAL;

ARTICLE; COPEPOD; DOWN REGULATION; ENVIRONMENTAL EXPOSURE; GENE CLUSTER; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE IDENTIFICATION; GENE NUMBER; GENETIC TRANSCRIPTION; MARINE ENVIRONMENT; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RISK ASSESSMENT; TIGRIOPUS JAPONICUS; TRANSCRIPTION REGULATION; UNINDEXED SEQUENCE; UPREGULATION; XENOBIOTIC METABOLISM;

ANIMALS; COPEPODA; COPPER; CYTOCHROME P-450 ENZYME SYSTEM; DOWN-REGULATION; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RNA, MESSENGER; TIME; UP-REGULATION;

COPEPODA; CRUSTACEA; DAPHNIA; INVERTEBRATA; TIGRIOPUS JAPONICUS;

EID: 67649516086     PISSN: 0166445X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquatox.2009.04.004     Document Type: Article

References (50)

1. Ankley G.T., Daston G.P., Degitz S.J., Denslow N.D., Hoke R.A., Kennedy S.W., Miracle A.L., Perkins E.J., Snape J., Tillitt D.E., Tyler C.R., and Versteeg D. Toxicogenomics in regulatory ecotoxicology. Environ. Sci. Technol. 40 (2006) 4055-4065
2. Bejarano A.C., Maruya K.A., and Chandler G.T. Toxicity assessment of sediments associated with various land-uses in coastal South Carolina, USA, using a meiobenthic copepod bioassay. Mar. Pollut. Bull. 49 (2004) 23-32
3. Bielmyer G.K., Grosell M., and Brixti K.V. Toxicity of silver, zinc, copper, and nickel to the copepod Acartia tonsa exposed via a phytoplankton diet. Environ. Sci. Technol. 40 (2006) 2063-2068
4. Bopp S.K., and Lettieri T. Gene regulation in the marine diatom Thalassiosira pseudonana upon exposure to polycyclic aromatic hydrocarbons (PAHs). Gene 396 (2007) 293-302
5. Connon R., Hooper H.L., Sibly R.M., Lim F.L., Heckmann L.H., Moore D.J., Watanabe H., Soetaert A., Cook K., Maund S.J., Hutchinson T.H., Moggs J., De Coen W., Iguchi T., and Callaghan A. Linking molecular and population stress responses in Daphnia magna exposed to cadmium. Environ. Sci. Technol. 42 (2008) 2181-2188
6. Dondero F., Piacentini L., Marsano F., Rebelo M., Vergani L., Venier P., and Viarengo A. Gene transcription profiling in pollutant exposed mussels (Mytilus spp.) using a new low-density oligonucleotide microarray. Gene 376 (2006) 24-36
7. Eichner C., Frost P., Dysvik B., Jonassen I., Kristiansen B., and Nilsen F. Salmon louse (Lepeophtheirus salmonis) transcriptomes during post molting maturation and egg production, revealed using EST-sequencing and microarray analysis. BMC Genomics 9 (2008) 126
8. Fisher N.S., and Hook S.E. Toxicology tests with aquatic animals need to consider the trophic transfer of metals. Toxicology 181-182 (2002) 531-536
9. Galletly B.C., Blows M.W., and Marshall D.J. Genetic mechanisms of pollution resistance in a marine invertebrate. Ecol. Appl. 17 (2007) 2290-2297
10. Gardeström J., Dahl U., Kotsalainen O., Maxson A., Elfwing T., Grahn M., Bengtsson B.E., and Breitholtz M. Evidence of population genetic effects of long-term exposure to contaminated sediments-a multi-endpoint study with copepods. Aquat. Toxicol. 86 (2008) 426-436
11. Geffard O., Geffard A., Budzinski H., Crouzet C., Menasria R., Amiard J., and Amiard-Triquet C. Mobility and potential toxicity of sediment-bound metals in a tidal estuary. Environ. Toxicol. 20 (2005) 407-417
12. Grosell M., Blanchard J., Brix K.V., and Gerdes R. Physiology is pivotal for interactions between salinity and acute copper toxicity to fish and invertebrates. Aquat. Toxicol. 84 (2007) 162-172
13. Guengerich F.P. Cytochrome p450 and chemical toxicology. Chem. Res. Toxicol. 21 (2008) 70-83
14. Heckmann L.H., Connon R., Hutchinson T.H., Maund S.J., Sibly R.M., and Callaghan A. Expression of target and reference genes in Daphnia magna exposed to ibuprofen. BMC Genomics 7 (2006) 175
15. Iguchi T., Watanabe H., and Katsu Y. Toxicogenomics and ecotoxicogenomics for studying endocrine disruption and basic biology. Gen. Comp. Endocrinol. 153 (2007) 25-29
16. Jain N., Thatte J., Braciale T., Ley K., OConnell M., and Lee J.K. Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays. Bioinformatics 19 (2003) 1945-1951
17. Jenny M.J., Chapman R.W., Mancia A., Chen Y.A., McKillen D.J., Trent H., Lang P., Escoubas J.M., Bachere E., Boulo V., Liu Z.J., Gross P.S., Cunningham C., Cupit P.M., Tanguy A., Guo X., Moraga D., Boutet I., Huvet A., De Guise S., Almeida J.S., and Warr G.W. A cDNA microarray for Crassostrea virginica and C. gigas. Mar. Biotechnol. 9 (2007) 577-591
18. Jung S.-O., Lee Y.-M., Park T.-J., Park H.G., Hagiwara A., Leung K.M.Y., Dahms H.-U., Lee W., and Lee J.-S. The complete mitochondrial genome of the intertidal copepod Tigriopus sp. (Copepoda, Harpactidae) from Korea and phylogenetic considerations. J. Exp. Mar. Biol. Ecol. 333 (2006) 251-262
19. Kazlauskas A., Sundström S., Poellinger L., and Pongratz I. The hsp90 chaperone complex regulates intracellular localization of the dioxin receptor. Mol. Cell. Biol. 21 (2001) 2594-2607
20. Korashy H.M., and El-Kadi A.O. Regulatory mechanisms modulating the expression of cytochrome P450 1A1 gene by heavy metals. Toxicol. Sci. 88 (2005) 39-51
21. Korashy H.M., and El-Kadi A.O. The role of redox-sensitive transcription factors NF-kappaB and AP-1 in the modulation of the Cyp1a1 gene by mercury, lead, and copper. Free Radic. Biol. Med. 44 (2008) 795-806
22. Kusk K.O., and Wollenberger L. Towards an internationally harmonized test method for reproductive and developmental effects of endocrine disrupters in marine copepods. Ecotoxicology 16 (2007) 183-195
23. Kwok K.W., Grist E.P., and Leung K.M. Acclimation effect and fitness cost of copper resistance in the marine copepod Tigriopus japonicus. Ecotoxicol. Environ. Saf. 72 (2009) 358-364
24. Kwok K.W., and Leung K.M. Toxicity of antifouling biocides to the intertidal harpacticoid copepod Tigriopus japonicus (Crustacea, Copepoda): effects of temperature and salinity. Mar. Pollut. Bull. 51 (2005) 830-837
25. Kwok K.W., Leung K.M., Bao V.W., and Lee J.-S. Copper toxicity in the marine copepod Tigropus japonicus: Low variability and high reproducibility of repeated acute and life-cycle tests. Mar. Pollut. Bull. 57 (2008) 632-636
26. Lee K.-W., Hwang D.-S., Rhee J.-S., Ki J.-S., Park H.G., Raisuddin S., and Lee J.-S. Molecular cloning and phylogenetic analysis of a vitellogenin (Vg) gene from the intertidal copepod, Tigriopus japonicus. Comp. Biochem. Physiol. 150B (2008) 395-402
27. Lee K.-W., Raisuddin S., Hwang D.-S., Park H.G., Dahms H.-U., Ahn I.-Y., and Lee J.-S. Two-generation toxicity study on the copepod model species Tigriopus japonicus. Chemosphere 72 (2008) 1359-1365
28. Lee K.-W., Raisuddin S., Hwang D.-S., Park H.G., and Lee J.-S. Acute toxicities of trace metals and common xenobiotics to the marine copepod Tigriopus japonicus: Evaluation of its use as a benchmark species for routine ecotoxicity tests in Western Pacific coastal regions. Environ. Toxicol. 22 (2007) 532-538
29. Lee K.-W., Raisuddin S., Rhee J.-S., Hwang D.-S., Yu I.T., Lee M.-Y., Park H.G., and Lee J.-S. Expression of glutathione S-transferase (GST) genes in the marine copepod Tigriopus japonicus exposed to trace metals. Aquat. Toxicol. 89 (2008) 158-166
30. Lee Y.-M., Lee K.-W., Park H., Park H.G., Raisuddin S., Ahn I.-Y., and Lee J.-S. Sequence, biochemical characteristics and expression of a novel Sigma-class of glutathione S-transferase from the intertidal copepod, Tigriopus japonicus with a possible role in antioxidant defense. Chemosphere 69 (2007) 893-902
31. Lettieri T. Recent applications of DNA microarray technology to toxicology and ecotoxicology. Environ. Health. Perspect. 114 (2006) 4-9
32. Lloyd D.R., and Phillips D.H. Oxidative DNA damage mediated by copper(II), iron(II) and nickel(II) Fenton reactions: evidence for site specific mechanisms in the formation of double-strand breaks, 8-hydroxydeoxyguanosine and putative intrastrand cross-links. Mutat. Res. 424 (1999) 23-36
33. Marcial H.S., Hagiwara A., and Snell T.W. Estrogenic compounds affect development of the harpacticoid copepod Tigriopus japonicus. Environ. Toxicol. Chem. 22 (2003) 3025-3030
34. Moriwaki H., Osborne M.R., and Phillips D.H. Effects of mixing metal ions on oxidative DNA damage mediated by a Fenton-type reduction. Toxicol. In Vitro 22 (2008) 36-44
35. Nikinmaa M., and Waser W. Molecular and cellular studies in evolutionary physiology of natural vertebrate populations: influences of individual variation and genetic components on sampling and measurements. J. Exp. Biol. 210 (2007) 1847-1857
36. Poynton H.C., Varshavsky J.R., Chang B., Cavigiolio G., Chan S., Holman P.S., Loguinov A.V., Bauer D.J., Komachi K., Theil E.C., Perkins E.J., Hughes O., and Vulpe C.D. Daphnia magna ecotoxicogenomics provides mechanistic insights into metal toxicity. Environ. Sci. Technol. 41 (2007) 1044-1050
37. Raisuddin S., Kwok K.W., Leung K.M., Schlenk D., and Lee J.-S. The copepod Tigriopus: a promising marine model organism for ecotoxicology and environmental genomics. Aquat. Toxicol. 83 (2007) 161-173
38. Rhee J.-S., Raisuddin S., Lee K.-W., Seo J.-S., Ki J.-S., Kim I.-C., Park H.G., and Lee J.-S. Heat shock protein (Hsp) gene responses of the intertidal copepod Tigriopus japonicus to environmental toxicants. Comp. Biochem. Physiol. 149C (2009) 104-112
39. Robbens J., van der Ven K., Maras M., Blust R., and De Coen W. Ecotoxicological risk assessment using DNA chips and cellular reporters. Trends Biotechnol. 25 (2007) 460-466
40. Schlager J.J., and Hart B.W. Stress gene activity in HepG2 cells after sulfur mustard exposure. J. Appl. Toxicol. 20 (2000) 395-405
41. 2) modulate expression of glutathione reductase (GR) gene from the intertidal copepod Tigriopus japonicus. Aquat. Toxicol. 80 (2006) 281-289
42. Shaw J.R., Colbourne J.K., Davey J.C., Glaholt S.P., Hampton T.H., Chen C.Y., Folt C.L., and Hamilton J.W. Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins. BMC Genomics 8 (2007) 477
43. Snape J.R., Maund S.J., Pickford D.B., and Hutchinson T.H. Ecotoxicogenomics: the challenge of integrating genomics into aquatic and terrestrial ecotoxicology. Aquat. Toxicol. 67 (2004) 143-154
44. Soetaert A., van der Ven K., Moens L.N., Vandenbrouck T., van Remortel P., and De Coen W.M. Daphnia magna and ecotoxicogenomics: gene expression profiles of the anti-ecdysteroidal fungicide fenarimol using energy-, molting- and life stage-related cDNA libraries. Chemosphere 67 (2007) 60-71
45. Song M.O., and Freedman J.H. Expression of copper-responsive genes in HepG2 cells. Mol. Cell. Biochem. 279 (2005) 141-147
46. Templeton R.C., Ferguson P.L., Washburn K.M., Scrivens W.A., and Chandler G.T. Life-cycle effects of single-walled carbon nanotubes (SWNTs) on an estuarine meiobenthic copepod. Environ. Sci. Technol. 40 (2006) 7387-7393
47. Tompkins L.M., and Wallace A.D. Mechanisms of cytochrome P450 induction. J. Biochem. Mol. Toxicol. 21 (2007) 176-181
48. Valko M., Morris H., and Cronin M.T. Metals, toxicity and oxidative stress. Curr. Med. Chem. 12 (2005) 1161-1208
49. Wang R.L., Biales A., Bencic D., Lattier D., Kostich M., Villeneuve D., Ankley G.T., Lazorchak J., and Toth G. DNA microarray application in ecotoxicology: experimental design, microarray scanning, and factors affecting transcriptional profiles in a small fish species. Environ. Toxicol. Chem. 27 (2008) 652-663
50. Watanabe H., Takahashi E., Nakamura Y., Oda S., Tatarazako N., and Iguchi T. Development of a Daphnia magna DNA microarray for evaluating the toxicity of environmental chemicals. Environ. Toxicol. Chem. 26 (2007) 669-676