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Volumn 10, Issue , 2009, Pages

Protein-protein interaction based on pairwise similarity

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL TOOLS; MEASURE OF SIMILARITIES; PRIMARY STRUCTURES; PROTEIN INTERACTION; PROTEIN-PROTEIN INTERACTIONS; STATE-OF-THE-ART METHODS; TRAINING SEQUENCES; YEAST SACCHAROMYCES CEREVISIAE;

EID: 67649494468     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-150     Document Type: Article
Times cited : (63)

References (33)
  • 1
    • 0035943340 scopus 로고    scopus 로고
    • Correlated sequence-signatures as markers of protein-protein interaction
    • 11518523
    • Sprinzak E Margalit H Correlated sequence-signatures as markers of protein-protein interaction J Mol Biol 2001, 311:681-692. 11518523
    • (2001) J Mol Biol , vol.311 , pp. 681-692
    • Sprinzak, E.1    Margalit, H.2
  • 4
    • 0032828715 scopus 로고    scopus 로고
    • A generic protein purification method for protein complex characterization and proteome exploration
    • 10504710
    • Rigaut G Shevchenko A Rutz B Wilm M Mann M Seraphin B A generic protein purification method for protein complex characterization and proteome exploration Nature Biotechnology 1999, 17:1030-1032. 10504710
    • (1999) Nature Biotechnology , vol.17 , pp. 1030-1032
    • Rigaut, G.1    Shevchenko, A.2    Rutz, B.3    Wilm, M.4    Mann, M.5    Seraphin, B.6
  • 6
    • 0037059461 scopus 로고    scopus 로고
    • A Combined Experimental and Computational Strategy to Define Protein Interaction Networks for Peptide Recognition Modules
    • 11743162
    • Tong A Becky D Giuliano N Gary DB Barbara B Luisa C Marie E Silvia F Bryce N Serena P A Combined Experimental and Computational Strategy to Define Protein Interaction Networks for Peptide Recognition Modules Science 2002, 295:321-324. 11743162
    • (2002) Science , vol.295 , pp. 321-324
    • Tong, A.1    Becky, D.2    Giuliano, N.3    Gary, D.B.4    Barbara, B.5    Luisa, C.6    Marie, E.7    Silvia, F.8    Bryce, N.9    Serena, P.10
  • 10
    • 0033618555 scopus 로고    scopus 로고
    • Detecting Protein Function and Protein-Protein Interactions from Genome Sequences
    • 10427000
    • Edward M Matteo P Ho-Leung N Danny WR Todd OY Eisenberg D Detecting Protein Function and Protein-Protein Interactions from Genome Sequences Science 1999, 285(5428):751-753. 10427000
    • (1999) Science , vol.285 , Issue.5428 , pp. 751-753
    • Edward, M.1    Matteo, P.2    Ho-Leung, N.3    Danny, W.R.4    Todd, O.Y.5    Eisenberg, D.6
  • 11
    • 0032169271 scopus 로고    scopus 로고
    • Conservation of gene order: A fingerprint of proteins that physically interact
    • 9787636
    • Thomas D Berend S Martijn H Peer B Conservation of gene order: A fingerprint of proteins that physically interact Trends Biochem Sci 1998, 23:324-328. 9787636
    • (1998) Trends Biochem Sci , vol.23 , pp. 324-328
    • Thomas, D.1    Berend, S.2    Martijn, H.3    Peer, B.4
  • 12
    • 0033551248 scopus 로고    scopus 로고
    • Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
    • Matteo P Edward M Michael JT David E Todd OY Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles Biochemistry 1999, 96:4285-4288.
    • (1999) Biochemistry , vol.96 , pp. 4285-4288
    • Matteo, P.1    Edward, M.2    Michael, J.T.3    David, E.4    Todd, O.Y.5
  • 13
    • 0035177259 scopus 로고    scopus 로고
    • Similarity of phylogenetic trees as indicator of protein-protein interaction
    • 11707606
    • Pazos F Valencia A Similarity of phylogenetic trees as indicator of protein-protein interaction Protein Engineering 2001, 14:609-614. 11707606
    • (2001) Protein Engineering , vol.14 , pp. 609-614
    • Pazos, F.1    Valencia, A.2
  • 14
    • 0036974250 scopus 로고    scopus 로고
    • Prediction, Assessment and Validation of Protein Interaction Maps in Bacteria
    • 12419263
    • Wojcik J Boneca IG Legrain P Prediction, Assessment and Validation of Protein Interaction Maps in Bacteria J Mol Biol 2002, 323:763-770. 12419263
    • (2002) J Mol Biol , vol.323 , pp. 763-770
    • Wojcik, J.1    Boneca, I.G.2    Legrain, P.3
  • 15
    • 0037453510 scopus 로고    scopus 로고
    • Assembly of cell regulatory systems through protein interaction domains
    • 12702867
    • Pawson T Nash P Assembly of cell regulatory systems through protein interaction domains Science 2003, 300:445-452. 12702867
    • (2003) Science , vol.300 , pp. 445-452
    • Pawson, T.1    Nash, P.2
  • 16
    • 0036799752 scopus 로고    scopus 로고
    • Inferring domain-domain interactions from protein-protein interactions
    • 187530 12368246
    • Deng M Mehta S Sun F Cheng T Inferring domain-domain interactions from protein-protein interactions Genome Res 2002, 12:1540-1548. 187530 12368246
    • (2002) Genome Res , vol.12 , pp. 1540-1548
    • Deng, M.1    Mehta, S.2    Sun, F.3    Cheng, T.4
  • 17
    • 10244242604 scopus 로고    scopus 로고
    • POINT: A database for the prediction of protein-protein interactions based on the orthologous interactome
    • 15217821
    • Huang TW Tien AC Huang WS Lee YC Peng CL Tseng HH Kao CY Huang CY POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome Bioinformatics 2004, 20:3273-3276. 15217821
    • (2004) Bioinformatics , vol.20 , pp. 3273-3276
    • Huang, T.W.1    Tien, A.C.2    Huang, W.S.3    Lee, Y.C.4    Peng, C.L.5    Tseng, H.H.6    Kao, C.Y.7    Huang, C.Y.8
  • 18
    • 28944450149 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions using random decision forest framework
    • 16234318
    • Xue-Wen C Mei L Prediction of protein-protein interactions using random decision forest framework Bioinformatics 2005, 21:4394-4400. 16234318
    • (2005) Bioinformatics , vol.21 , pp. 4394-4400
    • Xue-Wen, C.1    Mei, L.2
  • 19
    • 4444273377 scopus 로고    scopus 로고
    • Protein homology detection using string alignment kernels
    • 14988126
    • Saigo H Vert J Ueda N Akutsu T Protein homology detection using string alignment kernels Bioinformatics 2004, 20:1682-1689. 14988126
    • (2004) Bioinformatics , vol.20 , pp. 1682-1689
    • Saigo, H.1    Vert, J.2    Ueda, N.3    Akutsu, T.4
  • 20
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • 280013 3162770
    • Pearson WR Lipman DL Improved tools for biological sequence comparison PNAS 1988, 85:2444-2448. 280013 3162770
    • (1988) PNAS , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.L.2
  • 21
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith T Waterman M Identification of common molecular subsequences J Mol Bio 1981, 147:195-197.
    • (1981) J Mol Bio , vol.147 , pp. 195-197
    • Smith, T.1    Waterman, M.2
  • 22
    • 33947246772 scopus 로고    scopus 로고
    • Representing Protein Sequence with Low Number of Dimensions
    • Zaki NM Deris S Representing Protein Sequence with Low Number of Dimensions J Biological Sci 2005, 5:795-800.
    • (2005) J Biological Sci , vol.5 , pp. 795-800
    • Zaki, N.M.1    Deris, S.2
  • 23
    • 50249181311 scopus 로고    scopus 로고
    • Protein-protein Interaction Detection Based on Substring Sensitivity Measure
    • Zaki NM Deris S Alashwal H Protein-protein Interaction Detection Based on Substring Sensitivity Measure Inter J of Biomedical Sciences 2006, 1:148-154.
    • (2006) Inter J of Biomedical Sciences , vol.1 , pp. 148-154
    • Zaki, N.M.1    Deris, S.2    Alashwal, H.3
  • 24
    • 38449083927 scopus 로고    scopus 로고
    • fRMSDPred: Predicting local rmsd between structural fragments using sequence information
    • Rangwala H Karypis G fRMSDPred: Predicting local rmsd between structural fragments using sequence information Proceedings of the Computational Systems Biology 2007, 6:311-322.
    • (2007) Proceedings of the Computational Systems Biology , vol.6 , pp. 311-322
    • Rangwala, H.1    Karypis, G.2
  • 25
    • 0033669189 scopus 로고    scopus 로고
    • A network of protein-protein interactions in yeast
    • 11101803
    • Schwikowski B A network of protein-protein interactions in yeast Nat Biotechnol 2000, 18:1257-1261. 11101803
    • (2000) Nat Biotechnol , vol.18 , pp. 1257-1261
    • Schwikowski, B.1
  • 26
    • 0742287001 scopus 로고    scopus 로고
    • Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships
    • Liao L Noble WS Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships J Comp Biol 2003, 10:857-868.
    • (2003) J Comp Biol , vol.10 , pp. 857-868
    • Liao, L.1    Noble, W.S.2
  • 29
    • 22944432539 scopus 로고    scopus 로고
    • Application of string kernels in protein sequence classification
    • 16000012
    • Zaki NM Deris S Illias RM Application of string kernels in protein sequence classification Applied Bioinformatics 2005, 4:45-52. 16000012
    • (2005) Applied Bioinformatics , vol.4 , pp. 45-52
    • Zaki, N.M.1    Deris, S.2    Illias, R.M.3
  • 30
    • 40049092465 scopus 로고    scopus 로고
    • An assessment of the uses of homologous interactions
    • Ramazan S Charlotte D An assessment of the uses of homologous interactions Bioinformatics 2008, 5:689-695.
    • (2008) Bioinformatics , vol.5 , pp. 689-695
    • Ramazan, S.1    Charlotte, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.