-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.J.5
-
2
-
-
0032456296
-
Molecular phylogenetic analysis of a bacterial community in Sulphur River, Parker Cave, Kentucky
-
Angert E.R., Northup D.E., Reysenbach A.L., Peek A.S., Goebel B.M., and Pace N.R. Molecular phylogenetic analysis of a bacterial community in Sulphur River, Parker Cave, Kentucky. Am. Mineral. 83 (1998) 1583-1592
-
(1998)
Am. Mineral.
, vol.83
, pp. 1583-1592
-
-
Angert, E.R.1
Northup, D.E.2
Reysenbach, A.L.3
Peek, A.S.4
Goebel, B.M.5
Pace, N.R.6
-
3
-
-
67649531674
-
-
American Public Health Association, Washington DC
-
APHA. Standard Methods for the Examination of Water and Wastewater. 20th ed (1998), American Public Health Association, Washington DC
-
(1998)
20th ed
-
-
APHA1
-
4
-
-
0018200348
-
Autotrophic denitrification using elemental sulphur
-
Batchelor B., and Lawrence A.W. Autotrophic denitrification using elemental sulphur. J. Water Pollut. Control Fed. 50 (1978) 1986-2001
-
(1978)
J. Water Pollut. Control Fed.
, vol.50
, pp. 1986-2001
-
-
Batchelor, B.1
Lawrence, A.W.2
-
5
-
-
0038369933
-
Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
-
Bowman J.P., and McCuaig R.D. Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl. Environ. Microbiol. 69 (2003) 2463-2483
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2463-2483
-
-
Bowman, J.P.1
McCuaig, R.D.2
-
6
-
-
0026330304
-
2S-oxidation as motor of denitrification at the oxic-anoxic interface
-
2S-oxidation as motor of denitrification at the oxic-anoxic interface. Mar. Ecol. - Prog. Ser. 77 (1991) 157-169
-
(1991)
Mar. Ecol. - Prog. Ser.
, vol.77
, pp. 157-169
-
-
Brettar, I.1
Rheinheimer, G.2
-
7
-
-
0027079806
-
Influence of carbon availability on denitrification in the water column of the central Baltic
-
Brettar I., and Rheinheimer G. Influence of carbon availability on denitrification in the water column of the central Baltic. Limnol. Oceanogr. 37 (1992) 1146-1163
-
(1992)
Limnol. Oceanogr.
, vol.37
, pp. 1146-1163
-
-
Brettar, I.1
Rheinheimer, G.2
-
8
-
-
33144487676
-
Identification of a Thiomicrospira denitrificans-like Epsilonproteobacterium as a catalyst for autotrophic denitrification in the central Baltic sea
-
Brettar I., Labrenz M., Flavier S., Botel J., Kuosa H., Christen R., and Hofle M.G. Identification of a Thiomicrospira denitrificans-like Epsilonproteobacterium as a catalyst for autotrophic denitrification in the central Baltic sea. Appl. Environ. Microbiol. 72 (2006) 1364-1372
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 1364-1372
-
-
Brettar, I.1
Labrenz, M.2
Flavier, S.3
Botel, J.4
Kuosa, H.5
Christen, R.6
Hofle, M.G.7
-
9
-
-
0035909781
-
Proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge
-
Corre E., Reysenbach A.L., and Prieur D. Proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. FEMS Microbiol. Lett. 205 (2001) 329-335
-
(2001)
FEMS Microbiol. Lett.
, vol.205
, pp. 329-335
-
-
Corre, E.1
Reysenbach, A.L.2
Prieur, D.3
-
10
-
-
0141704589
-
Filamentous "Epsilonproteobacteria" dominate microbial mats from sulfidic cave springs
-
Engel A.S., Lee N., Porter M.L., Stern L.A., Bennett P.C., and Wagner M. Filamentous "Epsilonproteobacteria" dominate microbial mats from sulfidic cave springs. Appl. Environ. Microbiol. 69 (2003) 5503-5511
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5503-5511
-
-
Engel, A.S.1
Lee, N.2
Porter, M.L.3
Stern, L.A.4
Bennett, P.C.5
Wagner, M.6
-
11
-
-
0030175494
-
Degradation of phenol in wastewater in an upflow anaerobic sludge blanket reactor
-
Fang H.H.P., Chen T., Li Y.Y., and Chui H.K. Degradation of phenol in wastewater in an upflow anaerobic sludge blanket reactor. Water Res. 30 (1996) 1353-1360
-
(1996)
Water Res.
, vol.30
, pp. 1353-1360
-
-
Fang, H.H.P.1
Chen, T.2
Li, Y.Y.3
Chui, H.K.4
-
12
-
-
38949083490
-
Predictions of nitrate diffusion in sediment using horizontal attenuated total reflection (HATR) by Fourier transform infrared (FTIR) spectrometry
-
Fang H.H.P., Zhang M., Zhang T., and Chen J. Predictions of nitrate diffusion in sediment using horizontal attenuated total reflection (HATR) by Fourier transform infrared (FTIR) spectrometry. Water Res. 42 (2008) 903-908
-
(2008)
Water Res.
, vol.42
, pp. 903-908
-
-
Fang, H.H.P.1
Zhang, M.2
Zhang, T.3
Chen, J.4
-
13
-
-
0000461280
-
Confidence limits of phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits of phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
14
-
-
0034041256
-
Isolation and characterization of strains CVO and FWKO B, two novel nitrate-reducing, sulfide-oxidizing bacteria isolated from oil field brine
-
Gevertz D., Telang A.J., Voordouw G., and Jenneman G.E. Isolation and characterization of strains CVO and FWKO B, two novel nitrate-reducing, sulfide-oxidizing bacteria isolated from oil field brine. Appl. Environ. Microbiol. 66 (2000) 2491-2501
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2491-2501
-
-
Gevertz, D.1
Telang, A.J.2
Voordouw, G.3
Jenneman, G.E.4
-
15
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Sym. Ser. 41 (1999) 95-98
-
(1999)
Nucleic Acids Sym. Ser.
, vol.41
, pp. 95-98
-
-
Hall1
-
16
-
-
0037375056
-
Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption
-
Huber J., Butterfield D.A., and Baross J.A. Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption. FEMS Microbiol. Ecol. 43 (2003) 393-409
-
(2003)
FEMS Microbiol. Ecol.
, vol.43
, pp. 393-409
-
-
Huber, J.1
Butterfield, D.A.2
Baross, J.A.3
-
17
-
-
0031935382
-
Effect of nitrate-based bioremediation on contaminant distribution and sediment toxicity-column study
-
Hutchins S.R., Bantle J.A., and Schrock E.J. Effect of nitrate-based bioremediation on contaminant distribution and sediment toxicity-column study. Environ. Toxicol. Chem. 17 (1998) 349-361
-
(1998)
Environ. Toxicol. Chem.
, vol.17
, pp. 349-361
-
-
Hutchins, S.R.1
Bantle, J.A.2
Schrock, E.J.3
-
18
-
-
0345328152
-
Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-Proteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough
-
Inagaki F., Takai K., Kobayashi H., Nealson K., and Horikoshi H.K. Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-Proteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int. J. Syst. Evol. Microbiol. 53 (2003) 1801-1805
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 1801-1805
-
-
Inagaki, F.1
Takai, K.2
Kobayashi, H.3
Nealson, K.4
Horikoshi, H.K.5
-
20
-
-
9744249395
-
Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity
-
Kodama Y., and Watanabe K. Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity. Int. J. Syst. Evol. Microbiol. 54 (2004) 2297-2300
-
(2004)
Int. J. Syst. Evol. Microbiol.
, vol.54
, pp. 2297-2300
-
-
Kodama, Y.1
Watanabe, K.2
-
21
-
-
12344332673
-
Microbial community and biochemistry process in autosulfurotrophic denitrifying biofilm
-
Koenig A., Zhang T., Liu L.H., and Fang H.H.P. Microbial community and biochemistry process in autosulfurotrophic denitrifying biofilm. Chemosphere 58 (2005) 1041-1047
-
(2005)
Chemosphere
, vol.58
, pp. 1041-1047
-
-
Koenig, A.1
Zhang, T.2
Liu, L.H.3
Fang, H.H.P.4
-
23
-
-
0031756043
-
Antarctobacter heliothermus gen. nov., sp. nov., a budding bacterium from hypersaline and heliothermal Ekho Lake
-
Labrenz M., Collins M.D., Lawson P.A., Tindall B.J., Braker G., and Hirsch P. Antarctobacter heliothermus gen. nov., sp. nov., a budding bacterium from hypersaline and heliothermal Ekho Lake. Int. J. Syst. Bacteriol. 48 (1998) 1336-1372
-
(1998)
Int. J. Syst. Bacteriol.
, vol.48
, pp. 1336-1372
-
-
Labrenz, M.1
Collins, M.D.2
Lawson, P.A.3
Tindall, B.J.4
Braker, G.5
Hirsch, P.6
-
24
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt E., and Goodfellow M. (Eds), Wiley, Chichester, UK
-
Lane D.J. 16S/23S rRNA sequencing. In: Stackebrandt E., and Goodfellow M. (Eds). Nucleic Acid Techniques in Bacterial Systematic (1991), Wiley, Chichester, UK 115-175
-
(1991)
Nucleic Acid Techniques in Bacterial Systematic
, pp. 115-175
-
-
Lane, D.J.1
-
26
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S., Jobb G., Forster W., Brettske I., Gerber S., Ginhart A.W., Gross O., Grumann S., Hermann S., Jost R., Konig A., Liss T., Lussmann R., May M., Nonhoff B., Reichel B., Strehlow R., Stamatakis A., Stuckmann N., Vilbig A., Lenke M., Ludwig T., Bode A., and Schleifer K.H. ARB: a software environment for sequence data. Nucleic Acids Res. 32 (2004) 1363-1371
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jobb, G.10
Forster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
Konig, A.19
Liss, T.20
Lussmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.H.32
more..
-
27
-
-
0035318078
-
Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin
-
Madrid V.M., Taylor G.T., Scranton M.I., and Chistoserdov A.Y. Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin. Appl. Environ. Microbiol. 67 (2001) 1663-1674
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 1663-1674
-
-
Madrid, V.M.1
Taylor, G.T.2
Scranton, M.I.3
Chistoserdov, A.Y.4
-
28
-
-
0032918722
-
A new version of the RDP
-
Maidak B.L., Cole J.R., Parker Jr. C.T., Garrity G.M., Larsen N., Li B., and Lilburn T.G. A new version of the RDP. Nucleic Acids Res. 27 (1999) 171-173
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 171-173
-
-
Maidak, B.L.1
Cole, J.R.2
Parker Jr., C.T.3
Garrity, G.M.4
Larsen, N.5
Li, B.6
Lilburn, T.G.7
-
29
-
-
0028976424
-
Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
-
Moyer C.L., Dobbs F.C., and Karl D.M. Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 61 (1995) 1555-1562
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 1555-1562
-
-
Moyer, C.L.1
Dobbs, F.C.2
Karl, D.M.3
-
31
-
-
0029097821
-
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
Muyzer G., Teske A., Wirsen C., and Jannasch H. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164 (1995) 165-172
-
(1995)
Arch. Microbiol.
, vol.164
, pp. 165-172
-
-
Muyzer, G.1
Teske, A.2
Wirsen, C.3
Jannasch, H.4
-
32
-
-
18444397753
-
Succession of internal sulfur cycles and sulfur-oxidizing bacterial communities in microaerophilic wastewater biofilms
-
Okabe S., Ito T., Sugita K., and Satoh H. Succession of internal sulfur cycles and sulfur-oxidizing bacterial communities in microaerophilic wastewater biofilms. Appl. Environ. Microbiol. 71 (2005) 2520-2529
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2520-2529
-
-
Okabe, S.1
Ito, T.2
Sugita, K.3
Satoh, H.4
-
34
-
-
0033823565
-
Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent
-
Reysenbach A.L., Longnecker K., and Kirshtein J. Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Appl. Environ. Microbiol. 66 (2000) 3798-3806
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3798-3806
-
-
Reysenbach, A.L.1
Longnecker, K.2
Kirshtein, J.3
-
35
-
-
0023375195
-
The neighbor-joining method: a new method for constructing phylogenetic trees
-
Satio N., and Nei M. The neighbor-joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Satio, N.1
Nei, M.2
-
36
-
-
49549142424
-
A new type of thiosulphate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp. nov.
-
Timmer-Ten-Hoor A. A new type of thiosulphate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp. nov. Neth. J. Sea Res. 9 (1975) 344-350
-
(1975)
Neth. J. Sea Res.
, vol.9
, pp. 344-350
-
-
Timmer-Ten-Hoor, A.1
-
37
-
-
0019521333
-
Cell yield and bioenergetics of Thiomicrospira denitrificans compared with Thiobacillus denitrificans
-
Timmer-ten-Hoor A. Cell yield and bioenergetics of Thiomicrospira denitrificans compared with Thiobacillus denitrificans. Anton. Leeuw. Int. J. Gen. 47 (1981) 231-243
-
(1981)
Anton. Leeuw. Int. J. Gen.
, vol.47
, pp. 231-243
-
-
Timmer-ten-Hoor, A.1
-
39
-
-
0033759661
-
Molecular characterization of bacterial populations in petroleum-contaminated groundwater discharged from underground crude oil storage cavities
-
Watanabe K., Watanabe K., Kodama Y., Syutsubo K., and Harayama S. Molecular characterization of bacterial populations in petroleum-contaminated groundwater discharged from underground crude oil storage cavities. Appl. Environ. Microbiol. 66 (2000) 4803-4809
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4803-4809
-
-
Watanabe, K.1
Watanabe, K.2
Kodama, Y.3
Syutsubo, K.4
Harayama, S.5
-
40
-
-
0008020904
-
-
EPA/600/SR-97/103. USEPA, Washington, DC
-
Wilson, L.P., D'Adamo, P.C., Bouwer, E.J., 1997. Bioremediation of BTEX, Naphthalene, and Phenanthrene in Aquifer Material Using Mixed Oxygen/Nitrate Electron Acceptor Conditions. EPA/600/SR-97/103. USEPA, Washington, DC.
-
(1997)
Bioremediation of BTEX, Naphthalene, and Phenanthrene in Aquifer Material Using Mixed Oxygen/Nitrate Electron Acceptor Conditions
-
-
Wilson, L.P.1
D'Adamo, P.C.2
Bouwer, E.J.3
-
41
-
-
0000348749
-
Toxicity of intertidal and subtidal sediments contained by the Exxon Valdez spill
-
Rice S.D., Spies R.B., Wolfe D.A., and Wright B.W. (Eds), American Fisheries Society Symposium, Bethesda, MD
-
Wolfe D.A., Krahn M.M., Casillas E., Sol S., Thompson T.A., Lunz J., and Scott K.J. Toxicity of intertidal and subtidal sediments contained by the Exxon Valdez spill. In: Rice S.D., Spies R.B., Wolfe D.A., and Wright B.W. (Eds). Proceedings of the Symposium Exxon Valdez Oil Spill, vol. 18 (1996), American Fisheries Society Symposium, Bethesda, MD 121-139
-
(1996)
Proceedings of the Symposium Exxon Valdez Oil Spill, vol. 18
, pp. 121-139
-
-
Wolfe, D.A.1
Krahn, M.M.2
Casillas, E.3
Sol, S.4
Thompson, T.A.5
Lunz, J.6
Scott, K.J.7
-
42
-
-
0034788847
-
Phylogenetic diversity of a SRB-rich marine biofilm
-
Zhang T., and Fang H.H.P. Phylogenetic diversity of a SRB-rich marine biofilm. Appl. Microbiol. Biot. 57 (2001) 437-440
-
(2001)
Appl. Microbiol. Biot.
, vol.57
, pp. 437-440
-
-
Zhang, T.1
Fang, H.H.P.2
|