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Volumn 10, Issue , 2009, Pages

An improved method for genome wide DNA methylation profiling correlated to transcription and genomic instability in two breast cancer cell lines

Author keywords

[No Author keywords available]

Indexed keywords

BISULFITE; CPG OLIGODEOXYNUCLEOTIDE; GENOMIC DNA;

EID: 67649132826     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-223     Document Type: Article
Times cited : (23)

References (44)
  • 1
    • 33845417885 scopus 로고    scopus 로고
    • The cancer epigenome - Components and functional correlates
    • 10.1101/gad.1464906 17158741
    • Ting AH McGarvey KM Baylin SB The cancer epigenome - components and functional correlates Genes Dev 2006, 20:3215-3231. 10.1101/gad.1464906 17158741
    • (2006) Genes Dev , vol.20 , pp. 3215-3231
    • Ting, A.H.1    McGarvey, K.M.2    Baylin, S.B.3
  • 2
    • 0031816567 scopus 로고    scopus 로고
    • Hypomethylation of pericentromeric DNA in breast adenocarcinomas
    • 10.1002/(SICI)1097-0215(19980911)77:6<833::AID-IJC6>3.0.CO;2-V 9714050
    • Narayan A Ji W Zhang XY Marrogi A Graff JR Baylin SB Ehrlich M Hypomethylation of pericentromeric DNA in breast adenocarcinomas Int J Cancer 1998, 77:833-838. 10.1002/ (SICI)1097-0215(19980911)77:6<833::AID-IJC6>3.0.CO;2-V 9714050
    • (1998) Int J Cancer , vol.77 , pp. 833-838
    • Narayan, A.1    Ji, W.2    Zhang, X.Y.3    Marrogi, A.4    Graff, J.R.5    Baylin, S.B.6    Ehrlich, M.7
  • 4
    • 43149125426 scopus 로고    scopus 로고
    • Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines
    • 2336806 10.1101/gr.070961.107
    • Shann YJ Cheng C Chiao CH Chen DT Li PH Hsu MT Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines Genome Res 2008, 18:791-801. 2336806 18256232 10.1101/ gr.070961.107
    • (2008) Genome Res , vol.18 , pp. 791-801
    • Shann, Y.J.1    Cheng, C.2    Chiao, C.H.3    Chen, D.T.4    Li, P.H.5    Hsu, M.T.6
  • 9
  • 10
    • 1342326910 scopus 로고    scopus 로고
    • Relevance of breast cancer cell lines as models for breast tumours: An update
    • 10.1023/B:BREA.0000014042.54925.cc 14758095
    • Lacroix M Leclercq G Relevance of breast cancer cell lines as models for breast tumours: An update Breast Cancer Res Treat 2004, 83:249-289. 10.1023/B:BREA.0000014042.54925.cc 14758095
    • (2004) Breast Cancer Res Treat , vol.83 , pp. 249-289
    • Lacroix, M.1    Leclercq, G.2
  • 12
    • 23044499067 scopus 로고    scopus 로고
    • Distinct epigenetic changes in the stromal cells of breast cancers
    • 10.1038/ng1596 16007089
    • Hu M Yao J Cai L Bachman KE Brule van den F Velculescu V Polyak K Distinct epigenetic changes in the stromal cells of breast cancers Nat Genet 2005, 37:899-905. 10.1038/ng1596 16007089
    • (2005) Nat Genet , vol.37 , pp. 899-905
    • Hu, M.1    Yao, J.2    Cai, L.3    Bachman, K.E.4    Brule, F.5    Velculescu, V.6    Polyak, K.7
  • 13
    • 34347217103 scopus 로고    scopus 로고
    • Methylation-specific digital karyotyping
    • 10.1038/nprot.2006.278 17406428
    • Hu M Yao J Polyak K Methylation-specific digital karyotyping Nat Protoc 2006, 1:1621-1636. 10.1038/nprot.2006.278 17406428
    • (2006) Nat Protoc , vol.1 , pp. 1621-1636
    • Hu, M.1    Yao, J.2    Polyak, K.3
  • 14
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • 10.1016/j.cell.2007.05.009 17512414
    • Barski A Cuddapah S Cui K Roh TY Schones DE Wang Z Wei G Chepelev I Zhao K High-resolution profiling of histone methylations in the human genome Cell 2007, 129:823-837. 10.1016/j.cell.2007.05.009 17512414
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 16
    • 42649089780 scopus 로고    scopus 로고
    • The methylome: Approaches for global DNA methylation profiling
    • 10.1016/j.tig.2008.01.006 18325624
    • Beck S Rakyan VK The methylome: Approaches for global DNA methylation profiling Trends Genet 2008, 24:231-237. 10.1016/j.tig.2008.01.006 18325624
    • (2008) Trends Genet , vol.24 , pp. 231-237
    • Beck, S.1    Rakyan, V.K.2
  • 19
    • 67649110060 scopus 로고    scopus 로고
    • The University of California, Santa Cruz Genome Bioinformatics Site
    • The University of California, Santa Cruz Genome Bioinformatics Site http://genome.ucsc.edu
  • 20
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • 2577856 18714091 10.1101/gr.078212.108
    • Li H Ruan J Durbin R Mapping short DNA sequencing reads and calling variants using mapping quality scores Genome Res 2008, 18:1851-1858. 2577856 18714091 10.1101/gr.078212.108
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 23
    • 34250865000 scopus 로고    scopus 로고
    • Sequence analysis and editing for bisulphite genomic sequencing projects
    • 1904293 10.1093/nar/gkm330
    • Carr IMVE Cordery SF Markham AF Bonthron DT Sequence analysis and editing for bisulphite genomic sequencing projects Nucleic Acids Res 2007, 35:e79. 1904293 17517768 10.1093/nar/gkm330
    • (2007) Nucleic Acids Res , vol.35
    • Carr, I.M.V.E.1    Cordery, S.F.2    Markham, A.F.3    Bonthron, D.T.4
  • 24
    • 19944430269 scopus 로고    scopus 로고
    • High-resolution mapping of genotype-phenotype relationships in cri du chat syndrome using array comparative genomic hybridization
    • 1196376 15635506 10.1086/427762
    • Zhang X Snijders A Segraves R Zhang X Niebuhr A Albertson D Yang H Gray J Niebuhr E Bolund L Pinkel D High-resolution mapping of genotype-phenotype relationships in cri du chat syndrome using array comparative genomic hybridization Am J Hum Genet 2005, 76:312-326. 1196376 15635506 10.1086/427762
    • (2005) Am J Hum Genet , vol.76 , pp. 312-326
    • Zhang, X.1    Snijders, A.2    Segraves, R.3    Zhang, X.4    Niebuhr, A.5    Albertson, D.6    Yang, H.7    Gray, J.8    Niebuhr, E.9    Bolund, L.10    Pinkel, D.11
  • 25
    • 0004239562 scopus 로고    scopus 로고
    • Repeatmasker http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/
    • Repeatmasker
  • 28
    • 0026546877 scopus 로고
    • A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
    • 48546 10.1073/pnas.89.5.1827
    • Frommer M McDonald LE Millar DS Collis CM Watt F Grigg GW Molloy PL Paul CL A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands Proc Natl Acad Sci USA 1992, 89:1827-1831. 48546 1542678 10.1073/pnas.89.5.1827
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 1827-1831
    • Frommer, M.1    McDonald, L.E.2    Millar, D.S.3    Collis, C.M.4    Watt, F.5    Grigg, G.W.6    Molloy, P.L.7    Paul, C.L.8
  • 30
    • 0034232538 scopus 로고    scopus 로고
    • The DNA methylation machinery as a therapeutic target
    • 10.2174/1389450003349362 11475533
    • Szyf M The DNA methylation machinery as a therapeutic target Curr Drug Targets 2000, 1:101-118. 10.2174/1389450003349362 11475533
    • (2000) Curr Drug Targets , vol.1 , pp. 101-118
    • Szyf, M.1
  • 31
    • 0036145156 scopus 로고    scopus 로고
    • Cancer as an epigenetic disease: DNA methylation and chromatin alterations in human tumours
    • 10.1002/path.1024 11748635
    • Esteller M Herman JG Cancer as an epigenetic disease: DNA methylation and chromatin alterations in human tumours J Pathol 2002, 196:1-7. 10.1002/path.1024 11748635
    • (2002) J Pathol , vol.196 , pp. 1-7
    • Esteller, M.1    Herman, J.G.2
  • 32
    • 34250620891 scopus 로고    scopus 로고
    • DNA methylation in breast and colorectal cancers
    • 10.1038/modpathol.3800822 17464311
    • Agrawal A Murphy RF Agrawal DK DNA methylation in breast and colorectal cancers Mod Pathol 2007, 20:711-721. 10.1038/modpathol.3800822 17464311
    • (2007) Mod Pathol , vol.20 , pp. 711-721
    • Agrawal, A.1    Murphy, R.F.2    Agrawal, D.K.3
  • 33
    • 23944498278 scopus 로고    scopus 로고
    • DNA demethylation and carcinogenesis
    • 10.1007/s10541-005-0179-z 16097937
    • Kisseljova NP Kisseljov FL DNA demethylation and carcinogenesis Biochemistry (Mosc) 2005, 70:743-752. 10.1007/s10541-005-0179-z 16097937
    • (2005) Biochemistry (Mosc) , vol.70 , pp. 743-752
    • Kisseljova, N.P.1    Kisseljov, F.L.2
  • 34
    • 0037047355 scopus 로고    scopus 로고
    • Genomic deletions created upon LINE-1 retrotransposition
    • 10.1016/S0092-8674(02)00828-0 12176319
    • Gilbert N Lutz-Prigge S Moran JV Genomic deletions created upon LINE-1 retrotransposition Cell 2002, 110:315-325. 10.1016/S0092-8674(02)00828-0 12176319
    • (2002) Cell , vol.110 , pp. 315-325
    • Gilbert, N.1    Lutz-Prigge, S.2    Moran, J.V.3
  • 35
    • 0029751130 scopus 로고    scopus 로고
    • Hypomethylation of L1 LINE sequences prevailing in human urothelial carcinoma
    • 8971178
    • Jurgens B Schmitz-Drager BJ Schulz WA Hypomethylation of L1 LINE sequences prevailing in human urothelial carcinoma Cancer Res 1996, 56:5698-5703. 8971178
    • (1996) Cancer Res , vol.56 , pp. 5698-5703
    • Jurgens, B.1    Schmitz-Drager, B.J.2    Schulz, W.A.3
  • 36
    • 0033814412 scopus 로고    scopus 로고
    • Hypomethylation of LINE1 retrotransposon in human hepatocellular carcinomas, but not in surrounding liver cirrhosis
    • 10.1093/jjco/hyd079 11007163
    • Takai D Yagi Y Habib N Sugimura T Ushijima T Hypomethylation of LINE1 retrotransposon in human hepatocellular carcinomas, but not in surrounding liver cirrhosis Jpn J Clin Oncol 2000, 30:306-309. 10.1093/ jjco/hyd079 11007163
    • (2000) Jpn J Clin Oncol , vol.30 , pp. 306-309
    • Takai, D.1    Yagi, Y.2    Habib, N.3    Sugimura, T.4    Ushijima, T.5
  • 37
    • 33748623634 scopus 로고    scopus 로고
    • Common fragile sites as targets for chromosome rearrangements
    • 10.1016/j.dnarep.2006.05.010 16807141
    • Arlt MF Durkin SG Ragland RL Glover TW Common fragile sites as targets for chromosome rearrangements DNA Repair (Amst) 2006, 5:1126-1135. 10.1016/j.dnarep.2006.05.010 16807141
    • (2006) DNA Repair (Amst) , vol.5 , pp. 1126-1135
    • Arlt, M.F.1    Durkin, S.G.2    Ragland, R.L.3    Glover, T.W.4
  • 38
    • 0037074013 scopus 로고    scopus 로고
    • ATR regulates fragile site stability
    • 10.1016/S0092-8674(02)01113-3 12526805
    • Casper AM Nghiem P Arlt MF Glover TW ATR regulates fragile site stability Cell 2002, 111:779-789. 10.1016/S0092-8674(02)01113-3 12526805
    • (2002) Cell , vol.111 , pp. 779-789
    • Casper, A.M.1    Nghiem, P.2    Arlt, M.F.3    Glover, T.W.4
  • 39
    • 0025006860 scopus 로고
    • High levels of de novo methylation and altered chromatin structure at CpG islands in cell lines
    • 10.1016/0092-8674(90)90015-7 1974172
    • Antequera F Boyes J Bird A High levels of de novo methylation and altered chromatin structure at CpG islands in cell lines Cell 1990, 62:503-514. 10.1016/0092-8674(90)90015-7 1974172
    • (1990) Cell , vol.62 , pp. 503-514
    • Antequera, F.1    Boyes, J.2    Bird, A.3
  • 40
    • 33847628167 scopus 로고    scopus 로고
    • DNA methylation-dependent epigenetic regulation of gene expression in MCF-7 breast cancer cells
    • 17998816
    • Rivenbark AG Jones WD Risher JD Coleman WB DNA methylation-dependent epigenetic regulation of gene expression in MCF-7 breast cancer cells Epigenetics 2006, 1:32-44. 17998816
    • (2006) Epigenetics , vol.1 , pp. 32-44
    • Rivenbark, A.G.1    Jones, W.D.2    Risher, J.D.3    Coleman, W.B.4
  • 42
    • 22244449596 scopus 로고    scopus 로고
    • High-throughput protein expression analysis using tissue microarray technology of a large well-characterised series identifies biologically distinct classes of breast cancer confirming recent cDNA expression analyses
    • 10.1002/ijc.21004 15818618
    • Abd El-Rehim DM Ball G Pinder SE Rakha E Paish C Robertson JF Macmillan D Blamey RW Ellis IO High-throughput protein expression analysis using tissue microarray technology of a large well-characterised series identifies biologically distinct classes of breast cancer confirming recent cDNA expression analyses Int J Cancer 2005, 116:340-350. 10.1002/ ijc.21004 15818618
    • (2005) Int J Cancer , vol.116 , pp. 340-350
    • Abd El-Rehim, D.M.1    Ball, G.2    Pinder, S.E.3    Rakha, E.4    Paish, C.5    Robertson, J.F.6    Macmillan, D.7    Blamey, R.W.8    Ellis, I.O.9
  • 44
    • 0034793999 scopus 로고    scopus 로고
    • A comparison of gene expression signatures from breast tumors and breast tissue derived cell lines
    • 11673656
    • Ross DT Perou CM A comparison of gene expression signatures from breast tumors and breast tissue derived cell lines Dis Markers 2001, 17:99-109. 11673656
    • (2001) Dis Markers , vol.17 , pp. 99-109
    • Ross, D.T.1    Perou, C.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.