The 20th anniversary of EMBnet: 20 years of bioinformatics for the life sciences community

BMC Bioinformatics

Volumn 10, Issue SUPPL. 6, 2009, Pages

  D'Elia, Domenica ^a   Gisel, Andreas ^a   Eriksson, Nils Einar ^b   Kossida, Sophia ^c   Mattila, Kimmo ^d   Klucar, Lubos ^e   Bongcam Rudloff, Erik ^f  

^a CNR   (Italy)

^b UPPSALA UNIVERSITY   (Sweden)

^c BIOMEDICAL RESEARCH FOUNDATION   (Greece)

^d IT Center for Science   (Finland)

^e INSTITUTE OF CHEMISTRY   (Slovakia)

^f SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS SERVICES; COLLABORATIVE DEVELOPMENT; EMERGING TECHNOLOGIES; EUROPEAN COMMUNITY; GRID TECHNOLOGIES; HIGH-THROUGHPUT SEQUENCING; RESEARCH TOPICS; SCIENTIFIC COMMUNITY;

MOLECULAR BIOLOGY;

BIOINFORMATICS;

BIOINFORMATICS; BIOMEDICINE; BIOTECHNOLOGY; DATA MINING; EDITORIAL; FULL TEXT DATABASE; GENOMICS; HEALTH CARE ORGANIZATION; HIGH THROUGHPUT SCREENING; INFORMATION PROCESSING; INTERNET; MEDICAL INFORMATION SYSTEM; MEDICAL RESEARCH; MOLECULAR BIOLOGY; PROTEOMICS; TRANSCRIPTOMICS; WORKSHOP; BIOLOGY; HISTORY; METHODOLOGY; ORGANIZATION;

COMPUTATIONAL BIOLOGY; CONGRESSES AS TOPIC; GENOMICS; HISTORY, 20TH CENTURY; HISTORY, 21ST CENTURY; MOLECULAR BIOLOGY; PROTEOMICS;

EID: 67649124463     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-S6-S1     Document Type: Editorial

References (86)

1. European Molecular Biology Laboratory http://www.embl.org/
2. European Molecular Biology network http://www.embnet.org/
3. Harper RA EMBnet: An institute without walls Trends Biochem Sci 1996, 21(4):150-2. 8701473
4. Schuler GD Epstein JA Ohkawa H Kans JA Entrez: Molecular biology database and retrieval system Methods Enzymol 1996, 266:141-62. 8743683
5. Etzold T Ulyanov A Argos P SRS: Information retrieval system for molecular biology data banks Methods Enzymol 1996, 266:114-28. 8743681
6. Etzold T The Sequence Retrieval System (SRS) on the World Wide Web EMBnet.news 1994, 1(2):5-6.
7. Doelz R Biocomputing on a Server Network EMBnet.news 1994, 1(2):6-8.
8. Herzog R Report: SRS Federation workshop EMBnet.news 2004, 10(4):11-12.
9. Herzog R MRS and the management of biomolecular databanks EMBnet.news 2006, 12(2):17-20.
10. Carazo JM The Microscope Volume Data Base at EMBnet/CNB EMBnet.news 1994, 1(1):5-6.
11. Lopez R CpG Islands EMBnet.news 1995, 2(2):4-5.
12. Pesole G Grillo G Attimonelli M Liuni S CLEANUP: A fast computer program for cleaning nucleotide sequence databases from redundancies EMBnet.news 1996, 3(2):3-5.
13. Kruszewska K Stoesser G Webin and Sequin, New Sequence submission systems at the European Bioinformatics Institute EMBnet.news 1997, 4(2):7-8.
14. Andrade M Brown N Franchini A Hoersch S Leroy C Reich C Sander C GQserver - Automatic Annotation of Protein Sequences EMBnet.news 1997, 4(3):6.
15. Attwood TK Avison H Beck ME Bewley M Bleasby AJ Brewster F Cooper P Degtyarenko K Geddes AJ Flower DR Kelly MP Lott S Measures KM Parry-Smith DJ Perkins DN Scordis P Scott D Worledge C The PRINTS database of protein fingerprints: A novel information resource for computational molecular biology J Chem Inf Comput Sci 1997, 37(3):417-24. 9177000
16. Apweiler R Attwood TK Bairoch A Bateman A Birney E Biswas M Bucher P Cerutti L Corpet F Croning MD Durbin R Falquet L Fleischmann W Gouzy J Hermjakob H Hulo N Jonassen I Kahn D Kanapin A Karavidopoulou Y Lopez R Marx B Mulder NJ Oinn TM Pagni M Servant F Sigrist CJ Zdobnov EM The InterPro database, an integrated documentation resource for protein families, domains and functional sites Nucleic Acids Res 2001, 29(1):37-40. 29841 11125043
17. Kelso J Transcript reconstruction and analysis using STACKdb and stackPACK EMBnet.news 2002, 8(1):8-11.
18. Baillie-Gerritsen V A great achievement within the realm of Proteomics: UniProt, the universal protein knowledgebase EMBnet.news 2004, 10(1):3-5.
19. Falquet L Ioannidis V Cerutti L Zahn-Zabal M Pagni M The MyHits database and web Server EMBnet.news 2004, 10(4):3-6.
20. Barrio AM Bongcam-Rudloff E Integrating HERV data into ENSEMBL EMBnet.news 2005, 11(2):3-8.
21. D'Elia D Turi A Licciulli F Catalano D Saccone C The MitoDrome database and recent development EMBnet.news 2006, 12(1):6-11.
22. Harald Jonson P YeastBASE CSC EMBnet.news 2006, 12(2):14-16.
23. Herzog R MRS and the management of Biomolecular databanks EMBnet.news 2006, 12(2):17-20.
24. D'Elia D The MitoRes database EMBnet.news 2007, 13(1):19-22.
25. Sbisà E p53FamTaG database: A public resource which integrates genome-wide in silico and experimental analyses of p53 family direct target genes EMBnet.news 2007, 13(2):9-12.
26. engine DB: A repository for functional analogous gene products http://spank.ba.itb.cnr.it/engine/
27. Rice P Lopez R Doelz R Leunissen J EGCG 8.0 EMBnet.news 1995, 2(2):5-7.
28. Jonassen I Pratt: A program for discovering patterns in unaligned protein sequences EMBnet.news 1997, 4(1):4-6.
29. Nicholas KB Nicholas HB Deerfield DW GeneDoc: Analysis and Visualization of Genetic Variation EMBnet.news 1997, 4(2):1-4.
30. Rice P Longden I Bleasby A EMBOSS: The European Molecular Biology Open Software Suite Trends Genet 2000, 16(6):276-7. 10827456
31. Attwood TK Payne AWR Michie AD Parry-Smith DJ A Colour INteractive Editor for Multiple Alignments - CINEMA EMBnet.news 1996, 3(3):4-5.
32. Senger M W2H: WWW Interface to GCG EMBnet.news 1997, 4(1):8-10.
33. Colet M WWW2GCG: A Web interface to the GCG package EMBnet.news 1997, 4(2):8-10. Interview.
34. Clamp M Cuff J Barton G Jalview - Analysis and Manipulation of Multiple Sequence Alignments EMBnet.news 1998, 5(4):16-21.
35. Bottu G wEMBOSS, a featured Web interface to EMBOSS EMBnet.news 2004, 10(4):13-15.
36. Mullan L Carver T Jemboss, a java interface to EMBOSS EMBnet.news 2002, 8(1):3-5.
37. Bongcam-Rudloff E embossRUNNER: Desktop Bioinformatics on MacOSX EMBnet.news 2004, 10(2):7-11.
38. Nister A Bongcam-Rudloff E eBiotools Sept. 1st 2005 (new release) EMBnet.news 2005, 11(3):3-4.
39. Wu J Liu X Gao G Kong L Li Z Luo J WebLab: A bioinformatics platform EMBnet.news 2006, 12(2):13-14.
40. Pettifer S Attwood T McDermott P Sinnott J Thorne D UTOPIA: User-friendly Tools for Operating Informatics Applications EMBnet.news 2007, 13(2):19-24.
41. Esterman L Bioccelerator: A currently available solution for fast profile and Smith-Waterman searches EMBnet.news 1995, 2(1):5-6.
42. Doelz L MPSRCH - a New Method to Access Rapid Sequence Similarity Searching on Massively Parallel Computers using the HASSLE Protocol EMBnet.news 1995, 2(3):6-7.
43. Jongeneel V Junier T Iseli C Hofmann K Bucher P INSECT and MOLLUSCS - supercomputing on the cheap EMBnet.news 1997, 4(3):3-5.
44. riksson NE SweGrid EMBnet.news 2005, 11(1):3-4.
45. EGEE project http://www.eu-egee.org/
46. EMBRACE Network of Excellence http://www.embracegrid.info/
47. HealthGrid: A human grid initiative http://initiative.healthgrid.org/
48. BioinfoGRID http://www.bioinfogrid.eu/
49. EMBER: A practical guide to Bioinformatics http://www.ember.man.ac.uk/ login.php/
50. EMBnet e-Learning portal http://edu.embnet.org/
51. Moodle http://moodle.org/
52. Red Iberoamericana de Bioinformàtica http://rib.cecalc.ula.ve/
53. The Asia-Pacific Bioinformatics network http://apbionet.angis.org.au/
54. International Society for Computational Biology http://www.iscb.org/
55. African Society for Bioinformatics and Computational Biology http://www.asbcb.org
56. EMBnet.news http://www.embnet.org/embnet.news
57. EMBnet Conference 2008 http://www.embnet.org/EMBnet20thAnniversary
58. Falquet L The EMBnet 20th Anniversary Conference and Annual General Meeting 2008 EMBnet.news 2008, 14(4):3-14.
59. LIBI:INternational Laboratory of Bioinformatics http://www.libi.it
60. Maggi GP D'Elia D Gisel A Donvito G Cuscela G La Rocca G Tutorial on Grid Computing: Satellite event of the EMBnet Conference 2008 EMBnet.news 2008, 14(4):15-6.
61. Oinn T Addis M Ferris J Marvin D Senger M Greenwood M Carver T Glover K Pocock MR Wipat A Li P Taverna: A tool for the composition and enactment of bioinformatics workflows Bioinformatics 2004, 20(17):3045-54. 15201187
62. Open Conference System from the Public Knowledge Project http://pkp.sfu.ca/
63. Creanza TM Horner DS D'Addabbo A Maglietta R Mignone F Ancona N Pesole G Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements BMC Bioinformatics 2009, 10(Suppl 6):S2.
64. Penel S Arigon AM Dufayard GF Sertier AS Daubin V Duret V Gouy M Perrière G Databases of homologous gene families for comparative genomics BMC Bioinformatics 2009, 10(Suppl 6):S3.
65. Sperber G Lövgren A Eriksson NE Benachenhou F Blomberg J RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences BMC Bioinformatics 2009, 10(Suppl 6):S4.
66. Rubino F Attimonelli M RegExpBlasting (REB), an algorithm based on Regular Expression syntax for classifying new sequences BMC Bioinformatics 2009, 10(Suppl 6):S5.
67. Sebestyén E Nagy T Suhai S Barta E DoOPSearch: A web-based tool for finding and analyzing common conserved motifs in the promoter regions of different chordate and plant genes BMC Bioinformatics 2009, 10(Suppl 6):S6.
68. Calderon-Copete SP Wigger G Wunderlin C Schmidheini T Frey J Falquet L The Mycoplasma conjunctivae genome sequencing, annotation and analysis BMC Bioinformatics 2009, 10(Suppl 6):S7.
69. Li Z Zhang H Wang X Ge S Gu X Gao G Luo J Expression pattern divergence of duplicated genes in rice BMC Bioinformatics 2009, 10(Suppl 6):S8.
70. Nueda MJ Sebastián P Tarazona S García F Dopazo J Ferrer A Conesa A Functional assessment of time course microarray data BMC Bioinformatics 2009, 10(Suppl 6):S9.
71. Picardi E Mignone F Pesole G EasyCluster: A fast and efficient gene-oriented clustering tool for large-scale transcriptome data BMC Bioinformatics 2009, 10(Suppl 6):S10.
72. Moschopoulos CN Pavlopoulos GA Schneider R Likothanassis SD Kossida S GIBA: A clustering tool for detecting protein complexes BMC Bioinformatics 2009, 10(Suppl 6):S11.
73. Tsagrasoulis D Zerefos P Loudos G Vlahou A Baumann M Kossida S 'Brukin2D': A 2D visualization and comparison tool for LC-MS data BMC Bioinformatics 2009, 10(Suppl 6):S12.
74. Strömbergsson E Kleywegt GJ A chemogenomics view on protein-ligand spaces BMC Bioinformatics 2009, 10(Suppl 6):S13.
75. Singer GAC Hajibabaei M iBarcode.org: Web-based molecular biodiversity analysis BMC Bioinformatics 2009, 10(Suppl 6):S14.
76. Santamaria M Vicario S Pappadà G Scioscia G Scazzocchio C Saccone C Towards barcode markers in Fungi: An intron map of Ascomycota mitochondria BMC Bioinformatics 2009, 10(Suppl 6):S15.
77. Gerdtzen ZP Salgado JC Osses A Asenjo JA Rapaport I Andrews BA Modeling heterocyst pattern formation in cyanobacteria BMC Bioinformatics 2009, 10(Suppl 6):S16.
78. Picard F Miele V Daudin JJ Cottret L Robin S Deciphering the connectivity structure of biological networks using MixNet BMC Bioinformatics 2009, 10(Suppl 6):S17.
79. Barrio AM Lagercrantz E Sperber GO Blomberg J Bongcam-Rudloff E Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX BMC Bioinformatics 2009, 10(Suppl 6):S18.
80. Pettifer SR Thorne D McDermott P Marsh J Villéger A Kell DB Attwood TK Visualising biological data: A semantic approach to tool and database integration BMC Bioinformatics 2009, 10(Suppl 6):S19.
81. Roubelakis MG Zotos P Papachristoudis G Michalopoulos I Pappa KI Anagnou NP Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand alone pplication BMC Bioinformatics 2009, 10(Suppl 6):S20.
82. Barbera R Donvito G Falzone A La Rocca G Milanesi L Maggi GP The GENIUS Grid Portal and the robot certificates: A new tool for e-Science BMC Bioinformatics 2009, 10(Suppl 6):S21.
83. Minervini G Evangelista G Villanova L Slanzi D De Lucrezia D Poli I Luisi PL Polticelli F Massive non natural proteins structure prediction using grid technologies BMC Bioinformatics 2009, 10(Suppl 6):S22.
84. Castellano M Mastronardi G Bellotti R Decataldo G Pisciotta L Tarricone G A bioinformatics knowledge discovery application for grid computing BMC Bioinformatics 2009, 10(Suppl 6):S23.
85. Lagani V Montesanto A Di Cianni F Moreno V Landi S Conforti D Rose G Passarino G A novel similarity-measure for the analysis of genetic data in complex phenotypes BMC Bioinformatics 2009, 10(Suppl 6):S24.
86. Turi A Loglisci C Salvemini E Grillo G Malerba D D'Elia D Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining BMC Bioinformatics 2009, 10(Suppl 6):S25.