Evolutionary rate variation in Old World monkeys

Biology Letters

Volumn 5, Issue 3, 2009, Pages 405-408

  Elango, Navin ^a   Lee, Jeeyoung ^a   Peng, Zuogang ^a   Loh, Yong Hwee E ^a   Yi, Soojin V ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Comparative genomics; Male mutation bias; Old World monkeys; Substitution rates

Indexed keywords

DNA;

CHROMOSOME; COMPARATIVE STUDY; DNA; EVOLUTIONARY BIOLOGY; EVOLUTIONARY THEORY; GENETIC VARIATION; GENOMICS; METHYLATION; MUTATION; PRIMATE;

ARTICLE; AUTOSOME; BABOON; BACTERIAL ARTIFICIAL CHROMOSOME; BOOTSTRAPPING; CERCOPITHECIDAE; DNA METHYLATION; GENE MUTATION; GENE SEQUENCE; GENETIC VARIABILITY; HUMAN; HUMAN GENOME; MALE; MOLECULAR EVOLUTION; MOLECULAR MECHANICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIMATE; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; X CHROMOSOME;

BACTERIA (MICROORGANISMS); CERCOPITHECIDAE; HOMO; PAPIO; PRIMATES;

EID: 67649094493     PISSN: 17449561     EISSN: 1744957X     Source Type: Journal    
DOI: 10.1098/rsbl.2008.0712     Document Type: Article

References (20)

1. Bartosch-Harald, A., Berlin, S., Smith, N. G. C., Moller, A. P. & Ellegren, H. 2003 Life history and the male mutation bias. Evolution 57, 2398-2406. (doi:10.1554/03-036) (Pubitemid 37388031)
2. Chen, F. C. & Li, W.-H. 2001 Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 68, 444-456. (doi:10.1086/318206)
3. Delson, E., Tattersall, I., Van Couvering, J. A. & Brooks, A. S. 2000 Cercopithecina. In Encyclopedia of human evolution and prehistory (eds E. Delson, I. Tattersall, J. A. Van Couvering & A. S. Brooks), pp. 166-171. New York, NY: Garland.
4. Elango, N., Thomas, J. W., Program, N. C. S. & Yi, S. 2006 Variable molecular clocks in hominoids. Proc. Natl Acad. Sci. USA 103, 1370-1375. (doi:10.1073/pnas.0510716103)
5. Elango, N., Kim, S.-H., Vigoda, E., Yi, S. & NISC Program, 2008 Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation. PLoS Comput. Biol. 4, e1000015. (doi:10.1371/journal.pcbi.1000015) (Pubitemid 351328498)
6. Higley, J. D., Hasert, M. F., Suomi, S. J. & Linnoila, M. 1991 Nonhuman primate model of alcohol abuse: effects of early experience, personality, and stress on alcohol consumption. Proc. Natl Acad. Sci. USA 88, 7261-7265. (doi:10.1073/pnas.88.16.7261)
7. Kim, S.-H., Elango, N., Warden, C. W., Vigoda, E. & Yi, S. 2006 Heterogenous genomic molecular clocks in primates. PLoS Genet. 2, e163. (doi:10.1371/journal.pgen.0020163)
8. Li, W.-H., Yi, S. & Makova, K. 2002 Male-driven evolution. Curr. Opin. Genet. Dev. 12, 650-656. (doi:10.1016/S0959-437X(02)00354-4)
9. Makova, K. D. & Li, W.-H. 2002 Strong male-driven evolution of DNA sequences in humans and apes. Nature 416, 624-626. (doi:10.1038/416624a) (Pubitemid 34406760)
10. Meunier, J. & Duret, L. 2004 Recombination drives the evolution of GC-content in the human genome. Mol. Biol. Evol. 21, 984-990. (doi:10.1093/molbev/msh070)
11. Miyata, T., Hayashida, H., Kuma, K., Mitsuyasu, K. & Yasunaga, T. 1987 Male-driven molecular evolution: a model and nucleotide sequence analysis. Cold Spring Harbor Symp. Quant. Biol. 52, 863-867.
12. Nachman, M. W. & Crowell, S. L. 2000 Estimate of the mutation rate per nucleotide in humans. Genetics 156, 297-304.
13. Patterson, N., Richter, D. J., Gnerre, S., Lander, E. S. & Reich, D. 2006 Genetic evidence for complex speciation of humans and chimpanzees. Nature 441, 1103-1108. (doi:10.1038/nature04789) (Pubitemid 43990725)
14. Raaum, R. L., Sterner, K. N., Noviello, C. M., Stewart, C.-B. & Disotell, T. R. 2005 Catarrhine primate divergence dates estimated from complete mitochondrial genomes: concordance with fossil and nuclear DNA evidence. J. Hum. Evol. 48, 237-257. (doi:10.1016/j.jhevol.2004.11.007)
15. RMGSAC (Rhesus Macaque Genome Sequencing and Analysis Consortium) 2007 Evolutionary and biomedical insights from the rhesus macaque genome. Science 316, 222-234. (doi:10.1126/science.1139247)
16. Saitou, N. & Nei, M. 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
17. Shimmin, L. C., Chang, B. H. J. & Li, W.-H. 1993 Maledriven evolution in DNA sequences. Nature 362, 745-747. (doi:10.1038/362745a0)
18. Steiper, M. E., Young, N. M. & Sukrarna, T. Y. 2004 Genomic data support the hominoid slowdown and an early Oligocene estimate for the hominoid-cercopithecoid divergence. Proc. Natl Acad. Sci. USA 101, 17 021-17 026. (doi:10.1073/pnas.0407270101)
19. Wu, C.-I. & Li, W.-H. 1985 Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl Acad. Sci. USA 82, 1741-1745. (doi:10.1073/pnas.82.6.1741)
20. Yi, S., Ellsworth, D. L. & Li, W.-H. 2002 Slow molecular clocks in Old World monkeys, apes, and humans. Mol. Biol. Evol. 19, 2191-2198.