-
1
-
-
0000953725
-
Expresso: A problem solving environment for bioinformatics: Finding answers with microarray technology
-
R. G. Alscher, B. I. Chevone, L. S. Heath, and N. Ramakrishnan. Expresso: A problem solving environment for bioinformatics: Finding answers with microarray technology. In Proceedings of the High Performance Computing Symposium, Advanced Simulation Technologies Conference, pages 64-69, 2001.
-
(2001)
Proceedings of the High Performance Computing Symposium, Advanced Simulation Technologies Conference
, pp. 64-69
-
-
Alscher, R.G.1
Chevone, B.I.2
Heath, L.S.3
Ramakrishnan, N.4
-
2
-
-
0034617986
-
Free radicals and grape seed proanthocyanidin extract: Importance in human health and disease prevention
-
D. Bagchi, M. Bagchi, S. Stohs, D. Das, S. Ray, C. Kuszynski, S. Joshi, and H. Pruess. Free radicals and grape seed proanthocyanidin extract: importance in human health and disease prevention. Toxicology, 148(2-3):187-197, 2000.
-
(2000)
Toxicology
, vol.148
, Issue.2-3
, pp. 187-197
-
-
Bagchi, D.1
Bagchi, M.2
Stohs, S.3
Das, D.4
Ray, S.5
Kuszynski, C.6
Joshi, S.7
Pruess, H.8
-
3
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
P. Baldi and A. D. Long. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics, 17(6):509-19, 2001.
-
(2001)
Bioinformatics
, vol.17
, Issue.6
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
4
-
-
0029407394
-
Applications of Inductive Logic Programming
-
November
-
I. Bratko and S. Muggleton. Applications of Inductive Logic Programming. Communications of the ACM, Vol. 38(11):pp. 65-70, November 1995.
-
(1995)
Communications of the ACM
, vol.38
, Issue.11
, pp. 65-70
-
-
Bratko, I.1
Muggleton, S.2
-
5
-
-
0003884063
-
-
John Wiley and Sons, Inc., New York
-
T. A. Brown. Genomes. John Wiley and Sons, Inc., New York, 1999.
-
(1999)
Genomes
-
-
Brown, T.A.1
-
6
-
-
0003737298
-
-
American Society of Plant Physiologists, Rockville, Maryland
-
B. B. Buchanan, W. Gruissem, and R. L. Jones. Biochemistry and Molecular Biology of Plants. American Society of Plant Physiologists, Rockville, Maryland, 2000.
-
(2000)
Biochemistry and Molecular Biology of Plants
-
-
Buchanan, B.B.1
Gruissem, W.2
Jones, R.L.3
-
7
-
-
0032816675
-
Hormesis: A highly generalizable and reproducible phenomenon with important implications for risk assessment
-
E. J. Calabrese, L. A. Baldwin, and C. D. Holland. Hormesis: a highly generalizable and reproducible phenomenon with important implications for risk assessment. Risk Anal, 19(2):261-81, 1999.
-
(1999)
Risk Anal
, vol.19
, Issue.2
, pp. 261-281
-
-
Calabrese, E.J.1
Baldwin, L.A.2
Holland, C.D.3
-
8
-
-
51249169259
-
A simple and efficient method for isolating rna from pine trees
-
S. Chang, J. Puryear, and J. Cairney. A simple and efficient method for isolating rna from pine trees. Plant Molec. Biol. Reporter, 11:113-116, 1993.
-
(1993)
Plant Molec. Biol. Reporter
, vol.11
, pp. 113-116
-
-
Chang, S.1
Puryear, J.2
Cairney, J.3
-
9
-
-
0031246430
-
Ratio-based decisions and the quantitative analysis of cDNA microarray images
-
Y. Chen, E. R. Dougherty, and M. L. Bittner. Ratio-based decisions and the quantitative analysis of cDNA microarray images. Journal of Biomedical Optics, 2(4):364-374, 1997.
-
(1997)
Journal of Biomedical Optics
, vol.2
, Issue.4
, pp. 364-374
-
-
Chen, Y.1
Dougherty, E.R.2
Bittner, M.L.3
-
11
-
-
0035906336
-
Carotenoids and genomic stability
-
April
-
A. Collins. Carotenoids and genomic stability. Mutat Res., 475(1-2):21-28, April 2001.
-
(2001)
Mutat Res.
, vol.475
, Issue.1-2
, pp. 21-28
-
-
Collins, A.1
-
12
-
-
0003779650
-
-
Sinauer Associates, Inc., Sunderland, Massachusetts, second edition
-
G. M. Cooper. The Cell: A Molecular Approach. Sinauer Associates, Inc., Sunderland, Massachusetts, second edition, 2000.
-
(2000)
The Cell: A Molecular Approach
-
-
Cooper, G.M.1
-
13
-
-
0034024927
-
Cell wall adaptations to multiple environmental stresses in maize roots
-
B. Degenhardt and H. Gimmler. Cell wall adaptations to multiple environmental stresses in maize roots. J Exp Bot, 51(344):595-603, 2000.
-
(2000)
J Exp Bot
, vol.51
, Issue.344
, pp. 595-603
-
-
Degenhardt, B.1
Gimmler, H.2
-
14
-
-
0029839609
-
Characterization of three heat-shock-protein genes and their developmental regulation during somatic embryogenesis in white spruce [Picea glauca (Moench) Voss]
-
J. Z. Dong and D. I. Dunstan. Characterization of three heat-shock-protein genes and their developmental regulation during somatic embryogenesis in white spruce [Picea glauca (Moench) Voss]. Planta, 200(1):85-91, 1996.
-
(1996)
Planta
, vol.200
, Issue.1
, pp. 85-91
-
-
Dong, J.Z.1
Dunstan, D.I.2
-
16
-
-
0034625143
-
The escherichia coli mg1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
-
May 9
-
J. S. Edwards and B. O. Palsson. The escherichia coli mg1655 in silico metabolic genotype: Its definition, characteristics, and capabilities. Proceedings of the National Academy of Sciences of the United States of America, 97(10):5528-5533, May 9 2000.
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.10
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
17
-
-
2942579562
-
Metabolic flux balance analysis and the in silico analysis of esherichia coli k-12 gene deletions
-
July 27
-
J. S. Edwards and B. O. Palsson. Metabolic flux balance analysis and the in silico analysis of esherichia coli k-12 gene deletions. BMC Bioinformatics, 1(1):1-10, July 27 2000.
-
(2000)
BMC Bioinformatics
, vol.1
, Issue.1
, pp. 1-10
-
-
Edwards, J.S.1
Palsson, B.O.2
-
18
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
N. Friedman, M. Linial, I. Nachman, and D. Pe'er. Using Bayesian networks to analyze expression data. J Comput Biol, 7(3-4):601-20, 2000.
-
(2000)
J Comput Biol
, vol.7
, Issue.3-4
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'er, D.4
-
19
-
-
0003562737
-
-
W. H. Freeman and Company, New York, seventh edition
-
A. J. F. Griffiths, J. H. Miller, D. T. Suzuki, R. C. Lewontin, and W. M. Gelbart. An Introduction to Genetic Analysis. W. H. Freeman and Company, New York, seventh edition, 2000.
-
(2000)
An Introduction to Genetic Analysis
-
-
Griffiths, A.J.F.1
Miller, J.H.2
Suzuki, D.T.3
Lewontin, R.C.4
Gelbart, W.M.5
-
20
-
-
0345009031
-
Methionine sulfoxidation of the chloroplast small heat shock protein and conformational changes in the oligomer
-
N. Gustavsson, U. Harndahl, A. Emanuelsson, P. Roepstorff, and C. Sundby. Methionine sulfoxidation of the chloroplast small heat shock protein and conformational changes in the oligomer. Protein Sci., 8(11):2506-2512, 1999.
-
(1999)
Protein Sci.
, vol.8
, Issue.11
, pp. 2506-2512
-
-
Gustavsson, N.1
Harndahl, U.2
Emanuelsson, A.3
Roepstorff, P.4
Sundby, C.5
-
21
-
-
0035830637
-
The chaperone-like activity of a small heat shock protein is lost after sulfoxidation of conserved methionines in a surface-exposed amphipathic alpha-helix
-
U. Harndahl, B. Kokke, N. Gustavsson, S. Linse, K. Berggren, F. Tjerneld, W. Boelens, and C. Sundby. The chaperone-like activity of a small heat shock protein is lost after sulfoxidation of conserved methionines in a surface-exposed amphipathic alpha-helix. Biochim. Biophys. Acta, 1545(1-2):227-237, 2001.
-
(2001)
Biochim. Biophys. Acta
, vol.1545
, Issue.1-2
, pp. 227-237
-
-
Harndahl, U.1
Kokke, B.2
Gustavsson, N.3
Linse, S.4
Berggren, K.5
Tjerneld, F.6
Boelens, W.7
Sundby, C.8
-
22
-
-
0000868434
-
Bayesian Networks for Knowledge Discovery
-
U. Fayyad, G. Piatetsky-Shapiro, P. Smyth, and R. Uthurusamy, editors, AAAI/MIT Press
-
D. Heckerman. Bayesian Networks for Knowledge Discovery. In U. Fayyad, G. Piatetsky-Shapiro, P. Smyth, and R. Uthurusamy, editors, Advances in Knowledge Discovery and Data Mining, pages 273-306. AAAI/MIT Press, 1996.
-
(1996)
Advances in Knowledge Discovery and Data Mining
, pp. 273-306
-
-
Heckerman, D.1
-
23
-
-
0034636040
-
Mutants of Arabidopsis thaliana defective in the acquisition of tolerance to high temperature stress
-
S. W. Hong and E. Vierling. Mutants of Arabidopsis thaliana defective in the acquisition of tolerance to high temperature stress. Proc Natl Acad Sci U S A, 97(8):4392-7, 2000.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, Issue.8
, pp. 4392-4397
-
-
Hong, S.W.1
Vierling, E.2
-
24
-
-
0034921979
-
Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data
-
T. Ideker, V. Thorsson, A. F. Siegel, and L. E. Hood. Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data. J Comput Biol, 7(6):805-17, 2000.
-
(2000)
J Comput Biol
, vol.7
, Issue.6
, pp. 805-817
-
-
Ideker, T.1
Thorsson, V.2
Siegel, A.F.3
Hood, L.E.4
-
25
-
-
0035979259
-
Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments
-
M. K. Kerr and G. A. Churchill. Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments. Proc Natl Acad Sci U S A, 98(16):8961-5, 2001.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.16
, pp. 8961-8965
-
-
Kerr, M.K.1
Churchill, G.A.2
-
26
-
-
0035032570
-
Statistical design and the analysis of gene expression microarray data
-
M. K. Kerr and G. A. Churchill. Statistical design and the analysis of gene expression microarray data. Genet Res, 77(2):123-8, 2001.
-
(2001)
Genet Res
, vol.77
, Issue.2
, pp. 123-128
-
-
Kerr, M.K.1
Churchill, G.A.2
-
27
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
M. K. Kerr, M. Martin, and G. A. Churchill. Analysis of variance for gene expression microarray data. J Comput Biol, 7(6):819-37, 2000.
-
(2000)
J Comput Biol
, vol.7
, Issue.6
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
28
-
-
0034287393
-
General nonlinear framework for the analysis of gene interaction via multivariate expression arrays
-
S. Kim, E . R. Dougherty, M. L. Bittner, Y. Chen, K. Sivakumar, P. Meltzer, and J. M. Trent. General nonlinear framework for the analysis of gene interaction via multivariate expression arrays. J Biomed Opt, 5(4):411-24, 2000.
-
(2000)
J Biomed Opt
, vol.5
, Issue.4
, pp. 411-424
-
-
Kim, S.1
Dougherty, E.R.2
Bittner, M.L.3
Chen, Y.4
Sivakumar, K.5
Meltzer, P.6
Trent, J.M.7
-
29
-
-
0034730124
-
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
-
M. L. Lee, F. C. Kuo, G. A. Whitmore, and J. Sklar. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc Natl Acad Sci U S A, 97(18):9834-9, 2000.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, Issue.18
, pp. 9834-9839
-
-
Lee, M.L.1
Kuo, F.C.2
Whitmore, G.A.3
Sklar, J.4
-
30
-
-
0004238344
-
-
Oxford University Press, Oxford
-
B. Lewin. Genes VII. Oxford University Press, Oxford, 2000.
-
(2000)
Genes VII
-
-
Lewin, B.1
-
31
-
-
0035827588
-
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12
-
A. D. Long, H. J. Mangalam, B. Y. Chan, L. Tolleri, G. W. Hatfield, and P. Baldi. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. analysis of global gene expression in Escherichia coli K12. J Biol Chem, 276(23):19937-44, 2001.
-
(2001)
J Biol Chem
, vol.276
, Issue.23
, pp. 19937-19944
-
-
Long, A.D.1
Mangalam, H.J.2
Chan, B.Y.3
Tolleri, L.4
Hatfield, G.W.5
Baldi, P.6
-
32
-
-
0033939794
-
Light-stress-induced pigment changes and evidence for anthocyanin photoprotection in apples
-
Apr-May
-
M. Merzlyak and O. Chivkunova. Light-stress-induced pigment changes and evidence for anthocyanin photoprotection in apples. J. Photochem. Photobiol., 55(2-3):155-163, Apr-May 2000.
-
(2000)
J. Photochem. Photobiol.
, vol.55
, Issue.2-3
, pp. 155-163
-
-
Merzlyak, M.1
Chivkunova, O.2
-
34
-
-
85045782268
-
Scientific Knowledge Discovery using Inductive Logic Programming
-
November
-
S. Muggleton. Scientific Knowledge Discovery using Inductive Logic Programming. Communications of the ACM, Vol. 41(11):pp. 56-62, November 1999.
-
(1999)
Communications of the ACM
, vol.41
, Issue.11
, pp. 56-62
-
-
Muggleton, S.1
-
35
-
-
0035827385
-
Osmotic stress activates distinct lipid and MAPK signalling pathways in plants
-
T. Munnik and H. J. G. Meijer. Osmotic stress activates distinct lipid and MAPK signalling pathways in plants. FEBS Letters, 498:172-178, 2001.
-
(2001)
FEBS Letters
, vol.498
, pp. 172-178
-
-
Munnik, T.1
Meijer, H.J.G.2
-
36
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
M. A. Newton, C. M. Kendziorski, C. S. Richmond, F. R. Blattner, and K. W. Tsui. On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J Comput Biol, 8(1):37-52, 2001.
-
(2001)
J Comput Biol
, vol.8
, Issue.1
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
37
-
-
0034541782
-
A novel aldose/aldehyde reductase protects transgenic plants against lipid peroxidation under chemical and drought stresses
-
A. Oberschall, M. Deak, K. Torok, L. Sass, I. Vass, I. Kovacs, A. Feher, D. Dudits, and G. V. Horvath. A novel aldose/aldehyde reductase protects transgenic plants against lipid peroxidation under chemical and drought stresses. Plant J, 24(4):437-46, 2000.
-
(2000)
Plant J
, vol.24
, Issue.4
, pp. 437-446
-
-
Oberschall, A.1
Deak, M.2
Torok, K.3
Sass, L.4
Vass, I.5
Kovacs, I.6
Feher, A.7
Dudits, D.8
Horvath, G.V.9
-
38
-
-
0034973677
-
Dissecting the superoxide dismutase-acorbate-glutathione-pathway in chloroplasts by metabolic modeling. Computer simulations as a step towards flux analysis
-
May
-
A. Polle. Dissecting the superoxide dismutase-acorbate-glutathione-pathway in chloroplasts by metabolic modeling. computer simulations as a step towards flux analysis. Plant Physiology, 126:445-462, May 2001.
-
(2001)
Plant Physiology
, vol.126
, pp. 445-462
-
-
Polle, A.1
-
39
-
-
0033781954
-
Interaction of the targeting sequence of chloroplast precursors with HSP70 molecular chaperones
-
D. V. Rial, A. K. Arakaki, and E. A. Ceccarelli. Interaction of the targeting sequence of chloroplast precursors with HSP70 molecular chaperones. Eur J Biochem, 267(20):6239-48, 2000.
-
(2000)
Eur J Biochem
, vol.267
, Issue.20
, pp. 6239-6248
-
-
Rial, D.V.1
Arakaki, A.K.2
Ceccarelli, E.A.3
-
40
-
-
0034028259
-
Molcular reponses to dehydration and low temperature: Differences and cross-talk between two stress signaling pathways
-
K. Shinozaki and K. Yamaguchi-Shinozaki. Molcular reponses to dehydration and low temperature: Differences and cross-talk between two stress signaling pathways. Current Opinion in Plant Biology, 3:217-223, 2000.
-
(2000)
Current Opinion in Plant Biology
, vol.3
, pp. 217-223
-
-
Shinozaki, K.1
Yamaguchi-Shinozaki, K.2
-
42
-
-
0034911875
-
An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles
-
J. G. Thomas, J. M. Olson, S. J. Tapscott, and L. P. Zhao. An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles. Genome Res, 11(7):1227-36, 2001.
-
(2001)
Genome Res
, vol.11
, Issue.7
, pp. 1227-1236
-
-
Thomas, J.G.1
Olson, J.M.2
Tapscott, S.J.3
Zhao, L.P.4
-
43
-
-
0034490790
-
The role of anthocyanins as an antioxidant under oxidative stress in rats
-
T. Tsuda, F. Horio, and T. Osawa. The role of anthocyanins as an antioxidant under oxidative stress in rats. Biofactors, 13(1-4):133-139, 2000.
-
(2000)
Biofactors
, vol.13
, Issue.1-4
, pp. 133-139
-
-
Tsuda, T.1
Horio, F.2
Osawa, T.3
-
44
-
-
0033197511
-
A transmembrane hybrid-type histidine kinase in Arabidopsis functions as an osmosensor
-
T. Urao, B. Yakubov, R. Satoh, K. Yamaguchi-Shinozaki, M. Seki, T. Hirayama, and K. Shinozaki. A transmembrane hybrid-type histidine kinase in Arabidopsis functions as an osmosensor. Plant Cell, 11(9):1743-54, 1999.
-
(1999)
Plant Cell
, vol.11
, Issue.9
, pp. 1743-1754
-
-
Urao, T.1
Yakubov, B.2
Satoh, R.3
Yamaguchi-Shinozaki, K.4
Seki, M.5
Hirayama, T.6
Shinozaki, K.7
-
46
-
-
0034004638
-
The expression of small heat shock proteins in seeds responds to discrete developmental signals and suggests a general protective role in desiccation tolerance
-
N. Wehmeyer and E. Vierling. The expression of small heat shock proteins in seeds responds to discrete developmental signals and suggests a general protective role in desiccation tolerance. Plant Physiol., 122(4):1099-1108, 2000.
-
(2000)
Plant Physiol.
, vol.122
, Issue.4
, pp. 1099-1108
-
-
Wehmeyer, N.1
Vierling, E.2
-
47
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
R. D. Wolfinger, G. Gibson, E. D. Wolfinger, L. Bennett, H. Hamadeh, P. Bushel, C. Afshari, and R. S. Paules. Assessing gene significance from cDNA microarray expression data via mixed models. J Comput Biol, 8(6):625-37, 2001.
-
(2001)
J Comput Biol
, vol.8
, Issue.6
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
48
-
-
0034283150
-
Polyphenolics enhance red blood cell resistance to oxidative stress: In vitro and in vivo(1)
-
September
-
K. Youdim, B. Shukitt-Hale, S. MacKinnon, W. Kalt, and J. Joseph. Polyphenolics enhance red blood cell resistance to oxidative stress: in vitro and in vivo(1). Biochem. Biophys. Acta, 19(1):117-122, September 2000.
-
(2000)
Biochem. Biophys. Acta
, vol.19
, Issue.1
, pp. 117-122
-
-
Youdim, K.1
Shukitt-Hale, B.2
MacKinnon, S.3
Kalt, W.4
Joseph, J.5
-
49
-
-
0031473205
-
ER5, a tomato cDNA encoding an ethylene-responsive LEA-like protein: Characterization and expression in response to drought, ABA and wounding
-
H. Zegzouti, B. Jones, C. Marty, J. M. Lelievre, A. Latche, J. C. Pech, and M. Bouzayen. ER5, a tomato cDNA encoding an ethylene-responsive LEA-like protein: characterization and expression in response to drought, ABA and wounding. Plant Mol Biol, 35(6):847-54, 1997.
-
(1997)
Plant Mol Biol
, vol.35
, Issue.6
, pp. 847-854
-
-
Zegzouti, H.1
Jones, B.2
Marty, C.3
Lelievre, J.M.4
Latche, A.5
Pech, J.C.6
Bouzayen, M.7
|