Ratiometric Raman spectroscopy for quantification of protein oxidative damage

Analytical Biochemistry

Volumn 391, Issue 2, 2009, Pages 121-126

  Zhang, Dongmao ^a   Jiang, Dongping ^a   Yanney, Michael ^a   Zou, Sige ^b   Sygula, Andrzej ^a  

^a MISSISSIPPI STATE UNIVERSITY   (United States)

^b NATIONAL INSTITUTE ON AGING   (United States)

Author keywords

Biomolecule modification; Carbonyl; DCDR; Protein modification; Protein oxidation; Raman

Indexed keywords

MAMMALS; MERGERS AND ACQUISITIONS; NITROGEN COMPOUNDS; OXIDATION; RAMAN SPECTROSCOPY;

CARBONYL; DCDR; PROTEIN MODIFICATIONS; PROTEIN OXIDATION; RAMAN;

PROTEINS;

2,4 DINITROPHENYLHYDRAZINE; BOVINE SERUM ALBUMIN; CARBONYL DERIVATIVE; LYSOZYME;

ARTICLE; CONJUGATION; CONTROLLED STUDY; FLUORESCENCE; IMMUNOASSAY; INTERMETHOD COMPARISON; OXIDATIVE STRESS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CARBONYLATION; PROTEIN MODIFICATION; PROTEIN PROCESSING; QUANTITATIVE ANALYSIS; RAMAN SPECTROMETRY;

BOVINAE;

EID: 67449167916     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2009.05.019     Document Type: Article

References (39)

1. Witze E.S., Old W.M., Resing K.A., and Ahn N.G. Mapping protein post-translational modifications with mass spectrometry. Nat. Methods 4 (2007) 798-806
2. Sohal R.S., Agarwal S., Dubey A., and Orr W.C. Protein oxidative damage is associated with life expectancy of houseflies. Proc. Natl. Acad. Sci. USA 90 (1993) 7255-7259
3. Wayne F.P. A thousand points of light: the application of fluorescence detection technologies to two-dimensional gel electrophoresis and proteomics. Electrophoresis 21 (2000) 1123-1144
4. Makita Z., Vlassara H., Cerami A., and Bucala R. Immunochemical detection of advanced glycosylation end products in vivo. J. Biol. Chem. 267 (1992) 5133-5138
5. Perez-Cerda C., Quelhas D., Vega A.I., Ecay J., Vilarinho L., and Ugarte M. Screening using serum percentage of carbohydrate-deficient transferrin for congenital disorders of glycosylation in children with suspected metabolic disease. Clin. Chem. 54 (2008) 93-100
6. Seferian K.R., Tamm N.N., Semenov A.G., Tolstaya A.A., Koshkina E.V., Krasnoselsky M.I., Postnikov A.B., Serebryanaya D.V., Apple F.S., Murakarni M.M., and Katrukha A.G. Immunodetection of glycosylated NT-proBNP circulating in human blood. Clin. Chem. 54 (2008) 866-873
7. Chaudhuri A.R., de Waal E.M., Pierce A., Van R.H., Ward W.F., and Richardson A. Detection of protein carbonyls in aging liver tissue: a fluorescence-based proteomic approach. Mech. Ageing Dev. 127 (2006) 849-861
8. Li H., and Sundararajan N. Charge switch derivatization of phosphopeptides for enhanced surface-enhanced Raman spectroscopy and mass spectrometry detection. J. Proteome Res. 6 (2007) 2973-2977
9. Chen S., LaRoche T., Hamelinck D., Bergsma D., Brenner D., Simeone D., Brand R.E., and Haab B.B. Multiplexed analysis of glycan variation on native proteins captured by antibody microarrays. Nat. Methods 4 (2007) 437-444
10. Chen Z., Tabakman S.M., Goodwin A.P., Kattah M.G., Daranciang D., Wang X., Zhang G., Li X., Liu Z., Utz P.J., Jiang K., Fan S., and Dai H. Protein microarrays with carbon nanotubes as multicolor Raman labels. Nat. Biotechnol. 26 (2008) 1285-1292
11. Stadtman E.R. Protein oxidation and aging. Science 257 (1992) 1220-1224
12. Sohal R.S. Role of oxidative stress and protein oxidation in the aging process. Free Radic. Biol. Med. 33 (2002) 37-44
13. Levine R.L. Carbonyl modified proteins in cellular regulation, aging, and disease. Free Radic. Biol. Med. 32 (2002) 790-796
14. Robinson C.E., Keshavarzian A., Pasco D.S., Frommel T.O., Winship D.H., and Holmes E.W. Determination of protein carbonyl groups by immunoblotting. Anal. Biochem. 266 (1999) 48-57
15. Winterbourn C.C., Buss I.H., and Lester P. Protein carbonyl measurement by enzyme-linked immunosorbent assay. Methods Enzymol. 300 (1999) 106-111
16. Mirzaei H., and Regnier F. Affinity chromatographic selection of carbonylated proteins followed by identification of oxidation sites using tandem mass spectrometry. Anal. Chem. 77 (2005) 2386-2392
17. Chung W., and Miranda C.L. Detection of carbonyl-modified proteins in interfibrillar rat mitochondria using aminooxymethylcarbonylhydrazino-biotin as an aldehyde/keto-reactive probe in combination with Western blot analysis and tandem mass spectrometry. Electrophoresis 29 (2008) 1317-1324
18. Singh N.R., Rondeau P., Hoareau L., and Bourdon E. Identification of preferential protein targets for carbonylation in human mature adipocytes treated with native or glycated albumin. Free Radic. Res. 41 (2007) 1078-1088
19. Temple A., Yen T.-Y., and Gronert S. Identification of specific protein carbonylation sites in model oxidations of human serum albumin. J. Am. Soc. Mass Spectrom. 17 (2006) 1172-1180
20. Prokai L., Yan L., Vera-Serrano J., Stevens S.M., and Forster M.J. Mass spectrometry-based survey of age-associated protein carbonylation in rat brain mitochondria. J. Mass Spectrom. 42 (2007) 1583-1589
21. Levine R.L., Williams J.A., Stadtman E.P., Shacter E., and Lester P. Carbonyl assays for determination of oxidatively modified proteins. Methods Enzymol. 233 (1994) 346-357
22. Dalle-Donne I., Rossi R., Giustarini D., Milzani A., and Colombo R. Protein carbonyl groups as biomarkers of oxidative stress. Clin. Chim. Acta 329 (2003) 23-38
23. Zhang D., Xie Y., Mrozek M.F., Ortiz C., Davisson V.J., and Ben-Amotz D. Raman detection of proteomic analytes. Anal. Chem. 75 (2003) 5703-5709
24. Ortiz C., Zhang D., Xie Y., Ribbe A.E., and Ben-Amotz D. Validation of the drop coating deposition Raman method for protein analysis. Anal. Biochem. 353 (2006) 157-166
25. Gryniewicz C.M., and Kauffman J.F. Multivariate calibration of covalent aggregate fraction to the Raman spectrum of regular human insulin. J. Pharm. Sci. 97 (2008) 3727-3734
26. Xie Y., Zhang D., and Ben-Amotz D. Protein-ligand binding detected using ultrafiltration Raman difference spectroscopy. Anal. Biochem. 373 (2008) 154-160
27. Ortiz C., Zhang D., Ribbe Alexander E., Xie Y., and Ben-Amotz D. Analysis of insulin amyloid fibrils by Raman spectroscopy. Biophys. Chem. 128 (2007) 150-155
28. Ortiz C., Zhang D., Xie Y., Davisson V.J., and Ben-Amotz D. Identification of insulin variants using Raman spectroscopy. Anal. Biochem. 332 (2004) 245-252
29. Xie Y., Zhang D., Jarori Gotam K., Davisson V.J., and Ben-Amotz D. The Raman detection of peptide tyrosine phosphorylation. Anal. Biochem. 332 (2004) 116-121
30. Jarvis R.M., Blanch E.W., Golovanov A.P., Screen J., and Goodacre R. Quantification of casein phosphorylation with conformational interpretation using Raman spectroscopy. Analyst 132 (2007) 1053-1060
31. Das G., Mecarini F., De Angelis F., Prasciolu M., Liberale C., Patrini M., and Di Fabrizio E. Attomole (amol) myoglobin Raman detection from plasmonic nanostructures. Microelectron. Eng. 85 (2008) 1282-1285
32. Filik J., and Stone N. Investigation into the protein composition of human tear fluid using centrifugal filters and drop coating deposition Raman spectroscopy. J. Raman Spectrosc. 40 (2009) 218-224
33. Stadtman E., and Oliver C. Metal-catalyzed oxidation of proteins: physiological consequences. J. Biol. Chem. 266 (1991) 2005-2008
34. Levine R.L., Garland D., Oliver C.N., Amici A., Climent I., Lenz A.-G., Ahn B.-W., Shaltiel S., Stadtman E.R., Lester P., and Alexander N.G. Determination of carbonyl content in oxidatively modified proteins. Methods Enzymol. 186 (1990) 464-478
35. Wei F., Zhang D., Halas N.J., and Hartgerink J.D. Aromatic amino acids providing characteristic motifs in the Raman and SERS spectroscopy of peptides. J. Phys. Chem. B 112 (2008) 9158-9164
36. Fryling M.A., Zhao J., and McCreery R.L. Resonance Raman observation of surface carbonyl groups on carbon electrodes following dinitrophenylhydrazine derivatization. Anal. Chem. 67 (1995) 967-975
37. Curley D., and Siiman O. Conformation and orientation of the haptens, 2,4-dinitrophenyl amino acids, on colloidal silver from surface-enhanced Raman scattering. Langmuir 4 (1988) 1021-1032
38. Zhang D., and Ben-Amotz D. Enhanced chemical classification of Raman images in the presence of strong fluorescence interference. Appl. Spectrosc. 54 (2000) 1379-1383
39. Vitorino R., Guedes S., Tomer K., Domingues P., Duarte J., and Amado F. On-plate digestion using a commercial microfraction collector for nano-HPLC matrix-assisted laser desorption/ionization tandem time-of-flight protein analysis. Anal. Biochem. 380 (2008) 128-130