Structure of the amphioxus nebulin gene and evolution of the nebulin family genes

Gene

Volumn 443, Issue 1-2, 2009, Pages 76-82

  Hanashima, Akira ^a   Kubokawa, Kaoru ^b   Kimura, Sumiko ^a  

^a CHIBA UNIVERSITY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Amphioxus; Lasp; LIM domain; N RAP; Nebulette; Nebulin; Phylogenetic analysis; SH3 domain

Indexed keywords

LASP 1 ACTIN BINDING PROTEIN; MUSCLE PROTEIN; N RAP PROTEIN; NEBULETTE; NEBULIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BRANCHIOSTOMA FLORIDAE; CHORDATA; CONTROLLED STUDY; GENE STRUCTURE; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; CHORDATA; HUMANS; MOLECULAR SEQUENCE DATA; MUSCLE PROTEINS; PHYLOGENY; SEQUENCE ALIGNMENT;

BRANCHIOSTOMA LANCEOLATUM; VERTEBRATA;

EID: 67449103076     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2009.04.020     Document Type: Article

References (22)

1. Arimura T., et al. Characterization of the human nebulette gene: a polymorphism in an actin-binding motif is associated with nonfamilial idiopathic dilated cardiomyopathy. Hum. Genet. 107 (2000) 440-451
2. Donner K., Sandbacka M., Lehtokari V.L., Wallgren-Pettersson C., and Pelin K. Complete genomic structure of the human nebulin gene and identification of alternatively spliced transcripts. Eur. J. Hum. Genet. 12 (2004) 744-751
3. Fock U., and Hinssen H. Nebulin is a thin filament protein of the cardiac muscle of the agnathans. J. Muscle Res. Cell Motil. 23 (2002) 205-213
4. Hagiwara S., Henkart M.P., and Kidokoro Y. Excitation-contraction coupling in amphioxus muscle cells. J. Physiol. 219 (1971) 233-251
5. Hanashima A., Kubokawa K., and Kimura S. Characterization of amphioxus nebulin and its similarity to human nebulin. J. Exp. Biol. 212 (2009) 668-672
6. Holland P.W. More genes in vertebrates?. J. Struct. Funct. Genomics 3 (2003) 75-84
7. Holland P.W., Garcia-Fernàndez J., Williams N.A., and Sidow A. Gene duplications and the origins of vertebrate development. Dev. Suppl. (1994) 125-133
8. Katoh M., and Katoh M. Identification and characterization of LASP2 gene in silico. Int. J. Mol. Med. 12 (2003) 405-410
9. Labeit S., and Kolmerer B. The complete primary structure of human nebulin and its correlation to muscle structure. J. Mol. Biol. 248 (1995) 308-315
10. Li B., Zhuang L., and Trueb B. Zyxin interacts with the SH3 domains of the cytoskeletal proteins LIM-nebulette and Lasp-1. J. Biol. Chem. 279 (2004) 20401-20410
11. Luo G., Zhang J.Q., Nguyen T.P., Herrera A.H., Paterson B., and Horowits R. Complete cDNA sequence and tissue localization of N-RAP, a novel nebulin-related protein of striated muscle. Cell Motil. Cytoskelet. 38 (1997) 75-90
12. McElhinny A.S., Kazmierski S.T., Labeit S., and Gregorio C.C. Nebulin: the nebulous, multifunctional giant of striated muscle. Trends Cardiovasc. Med. 13 (2003) 195-201
13. Millevoi S., et al. Characterization of nebulette and nebulin and emerging concepts of their roles for vertebrate Z-discs. J. Mol. Biol. 28 (1998) 111-123
14. Mizuta T., and Kubokawa K. Presence of sex steroids and cytochrome P450 genes in amphioxus. Endocrinology 148 (2007) 3554-3565
15. Mohiddin S.A., et al. Genomic organization, alternative splicing, and expression of human and mouse N-RAP, a nebulin-related LIM protein of striated muscle. Cell Motil. Cytoskelet. 55 (2003) 200-212
16. Moncman C.L., and Wang K. Nebulette: a 107 kD nebulin-like protein in cardiac muscle. Cell Motil. Cytoskelet. 32 (1995) 205-225
17. Page R.D. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12 (1996) 357-358
18. Putnam N.H., et al. The amphioxus genome and the evolution of the chordate karyotype. Nature 453 (2008) 1064-1071
19. Terasaki A.G., et al. A novel LIM and SH3 protein (Lasp-2) highly expressing in chicken brain. Biochem. Biophys. Res. Commun. 313 (2004) 48-54
20. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
21. Tomasetto C., Moog-Lutz C., Régnier C.H., Schreiber V., Basset P., and Rio M.C. Lasp-1 (MLN 50) defines a new LIM protein subfamily characterized by the association of LIM and SH3 domains. FEBS Lett. 373 (1995) 245-249
22. Wang K. Purification of titin and nebulin. Methods Enzymol. 85 (1982) 264-274