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Volumn 27, Issue 8, 2009, Pages 969-977

Computational screening and design of S100B ligand to block S100B-p53 interaction

Author keywords

Binding affinity; Molecular dynamics simulation; p53 tumor suppressor; S100B; Virtual screening

Indexed keywords

BINDING AFFINITY; MOLECULAR DYNAMICS SIMULATION; P53 TUMOR SUPPRESSOR; S100B; VIRTUAL SCREENING;

EID: 67349279571     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmgm.2009.02.006     Document Type: Article
Times cited : (10)

References (57)
  • 1
    • 0034995073 scopus 로고    scopus 로고
    • S100: a multigenic family of calcium-modulated proteins of the EF-hand type with intracellular and extracellular functional roles
    • Donato R. S100: a multigenic family of calcium-modulated proteins of the EF-hand type with intracellular and extracellular functional roles. The International Journal of Biochemistry & Cell Biology 33 (2001) 637-668
    • (2001) The International Journal of Biochemistry & Cell Biology , vol.33 , pp. 637-668
    • Donato, R.1
  • 2
    • 0032588099 scopus 로고    scopus 로고
    • 2+-binding S100 proteins in the central nervous system
    • 2+-binding S100 proteins in the central nervous system. Neurochemical Research 24 (1999) 1097-1100
    • (1999) Neurochemical Research , vol.24 , pp. 1097-1100
    • Heizmann, C.W.1
  • 4
    • 0022973592 scopus 로고
    • Ions binding to S100 proteins. I. Calcium- and zinc-binding properties of bovine brain S100 alpha alpha, S100a (alpha beta), and S100b (beta beta) protein: Zn2 + regulates Ca2 + binding on S100b protein
    • Baudier J., Glasser N., and Gerard D. Ions binding to S100 proteins. I. Calcium- and zinc-binding properties of bovine brain S100 alpha alpha, S100a (alpha beta), and S100b (beta beta) protein: Zn2 + regulates Ca2 + binding on S100b protein. Journal of Biological Chemistry 261 (1986) 8192-8203
    • (1986) Journal of Biological Chemistry , vol.261 , pp. 8192-8203
    • Baudier, J.1    Glasser, N.2    Gerard, D.3
  • 6
    • 0029161781 scopus 로고
    • Glial cytokines in Alzheimer's disease: review and pathogenic implications
    • Mrak R.E., Sheng J.G., and Griffin W.S.T. Glial cytokines in Alzheimer's disease: review and pathogenic implications. Human Pathology 26 (1995) 816-823
    • (1995) Human Pathology , vol.26 , pp. 816-823
    • Mrak, R.E.1    Sheng, J.G.2    Griffin, W.S.T.3
  • 8
    • 0023190008 scopus 로고
    • Comparison of S100b protein with calmodulin: interactions with melittin and microtubule-associated .tau. proteins and inhibition of phosphorylation of .tau. proteins by protein kinase C
    • Baudier J., Mochly-Rosen D., Newton A., Lee S.H., Koshland D.E., and Cole R.D. Comparison of S100b protein with calmodulin: interactions with melittin and microtubule-associated .tau. proteins and inhibition of phosphorylation of .tau. proteins by protein kinase C. Biochemistry 26 (1987) 2886-2893
    • (1987) Biochemistry , vol.26 , pp. 2886-2893
    • Baudier, J.1    Mochly-Rosen, D.2    Newton, A.3    Lee, S.H.4    Koshland, D.E.5    Cole, R.D.6
  • 9
    • 0023875705 scopus 로고
    • Interactions between the microtubule-associated tau proteins and S100b regulate tau phosphorylation by the Ca2+/calmodulin-dependent protein kinase II
    • Baudier J., and Cole R.D. Interactions between the microtubule-associated tau proteins and S100b regulate tau phosphorylation by the Ca2+/calmodulin-dependent protein kinase II. Journal of Biological Chemistry 263 (1988) 5876-5883
    • (1988) Journal of Biological Chemistry , vol.263 , pp. 5876-5883
    • Baudier, J.1    Cole, R.D.2
  • 10
    • 0027965622 scopus 로고
    • Inhibition of protein kinase C- and casein kinase II-mediated phosphorylation of GAP-43 by S100β
    • Lin L.-H., Eldik L.J.V., Osheroff N., and Norden J.J. Inhibition of protein kinase C- and casein kinase II-mediated phosphorylation of GAP-43 by S100β. Molecular Brain Research 25 (1994) 297-304
    • (1994) Molecular Brain Research , vol.25 , pp. 297-304
    • Lin, L.-H.1    Eldik, L.J.V.2    Osheroff, N.3    Norden, J.J.4
  • 11
    • 0033945124 scopus 로고    scopus 로고
    • Structure of the negative regulatory domain of p53 bound to S100B(ββ)
    • Rust R.R., Baldisseri D.M., and Weber D.J. Structure of the negative regulatory domain of p53 bound to S100B(ββ). Nature Structural Biology 7 (2000) 570-574
    • (2000) Nature Structural Biology , vol.7 , pp. 570-574
    • Rust, R.R.1    Baldisseri, D.M.2    Weber, D.J.3
  • 14
    • 0030941458 scopus 로고    scopus 로고
    • p53, the cellular gatekeeper for growth and division
    • Levine A.J. p53, the cellular gatekeeper for growth and division. Cell 88 (1997) 323-331
    • (1997) Cell , vol.88 , pp. 323-331
    • Levine, A.J.1
  • 15
    • 0033579412 scopus 로고    scopus 로고
    • Regulation of the p53 tumor suppressor protein
    • Oren M. Regulation of the p53 tumor suppressor protein. Journal of Biological Chemistry 274 (1999) 36031-36034
    • (1999) Journal of Biological Chemistry , vol.274 , pp. 36031-36034
    • Oren, M.1
  • 18
    • 18544381886 scopus 로고    scopus 로고
    • Calcium-binding properties of wild-type and ef-hand mutants of s100b in the presence and absence of a peptide derived from the C-Terminal negative regulatory domain of p53
    • Markowitz J., Rustandi R.R., Varney K.M., Wilder P.T., Udan R., Wu S.L., Horrocks W.D., and Weber D.J. Calcium-binding properties of wild-type and ef-hand mutants of s100b in the presence and absence of a peptide derived from the C-Terminal negative regulatory domain of p53. Biochemistry 44 (2005) 7305-7314
    • (2005) Biochemistry , vol.44 , pp. 7305-7314
    • Markowitz, J.1    Rustandi, R.R.2    Varney, K.M.3    Wilder, P.T.4    Udan, R.5    Wu, S.L.6    Horrocks, W.D.7    Weber, D.J.8
  • 21
    • 0027479439 scopus 로고
    • Induction of the metastatic phenotype by transfection of a benign rat mammary epithelial cell line with the gene for p9Ka, a rat calcium-binding protein, but not with the oncogene EJ-ras-1
    • Davies B., Davies M., Gibbs F., Barraclough R., and Rudland P. Induction of the metastatic phenotype by transfection of a benign rat mammary epithelial cell line with the gene for p9Ka, a rat calcium-binding protein, but not with the oncogene EJ-ras-1. Oncogene 8 (1993) 999-1008
    • (1993) Oncogene , vol.8 , pp. 999-1008
    • Davies, B.1    Davies, M.2    Gibbs, F.3    Barraclough, R.4    Rudland, P.5
  • 22
    • 0029860590 scopus 로고    scopus 로고
    • Expression of the calcium-binding protein S100A4 (p9Ka) in MMTV-neu transgenic mice induces metastasis of mammary tumours
    • Davies M., Rudland P., Robertson L., Parry E., Jolicoeur P., and Barraclough R. Expression of the calcium-binding protein S100A4 (p9Ka) in MMTV-neu transgenic mice induces metastasis of mammary tumours. Oncogene 13 (1996) 1631-1637
    • (1996) Oncogene , vol.13 , pp. 1631-1637
    • Davies, M.1    Rudland, P.2    Robertson, L.3    Parry, E.4    Jolicoeur, P.5    Barraclough, R.6
  • 23
    • 0033032641 scopus 로고    scopus 로고
    • S100-Beta, melanoma-inhibiting activity, and lactate dehydrogenase discriminate progressive from nonprogressive american joint committee on cancer stage IV Melanoma
    • Deichmann M., Benner A., Bock M., Jäckel A., Uhl K., Waldmann V., and Näher H. S100-Beta, melanoma-inhibiting activity, and lactate dehydrogenase discriminate progressive from nonprogressive american joint committee on cancer stage IV Melanoma. Journal of Clinical Oncology 17 (1999) 1891-1896
    • (1999) Journal of Clinical Oncology , vol.17 , pp. 1891-1896
    • Deichmann, M.1    Benner, A.2    Bock, M.3    Jäckel, A.4    Uhl, K.5    Waldmann, V.6    Näher, H.7
  • 24
    • 0024697280 scopus 로고
    • Isolation and characterization of a gene specifically expressed in different metastatic cells and whose deduced gene product has a high degree of homology to a Ca2+-binding protein family
    • Ebralidze A., Tulchinsky E., Grigorian M., Afanasyeva A., Senin V., Revazova E., and Lukanidin E. Isolation and characterization of a gene specifically expressed in different metastatic cells and whose deduced gene product has a high degree of homology to a Ca2+-binding protein family. Genes Development 3 (1989) 1086-1093
    • (1989) Genes Development , vol.3 , pp. 1086-1093
    • Ebralidze, A.1    Tulchinsky, E.2    Grigorian, M.3    Afanasyeva, A.4    Senin, V.5    Revazova, E.6    Lukanidin, E.7
  • 25
    • 0032803996 scopus 로고    scopus 로고
    • Prognostic significance of serum S100B detection compared with routine blood parameters in advanced metastatic melanoma patients
    • Hauschild A., Michaelsen J., Brenner W., Rudolph P., Gläser R., Henze E., and Christophers E. Prognostic significance of serum S100B detection compared with routine blood parameters in advanced metastatic melanoma patients. Melanoma Research 9 (1999) 155-161
    • (1999) Melanoma Research , vol.9 , pp. 155-161
    • Hauschild, A.1    Michaelsen, J.2    Brenner, W.3    Rudolph, P.4    Gläser, R.5    Henze, E.6    Christophers, E.7
  • 26
    • 0032581502 scopus 로고    scopus 로고
    • Human S100A4 (p9Ka) induces the metastatic phenotype upon benign tumour cells
    • Lloyd B.H., Platt-Higgins A., Rudland P.S., and Barraclough R. Human S100A4 (p9Ka) induces the metastatic phenotype upon benign tumour cells. Oncogene 17 (1998) 465-473
    • (1998) Oncogene , vol.17 , pp. 465-473
    • Lloyd, B.H.1    Platt-Higgins, A.2    Rudland, P.S.3    Barraclough, R.4
  • 27
    • 0032939805 scopus 로고    scopus 로고
    • The use of dipolar couplings for determining the solution structure of rat apo-S100B(ββ)
    • Drohat A.C., TJandra N., Baldisseri D.M., and Weber D.J. The use of dipolar couplings for determining the solution structure of rat apo-S100B(ββ). Protein Science 8 (1999) 800-809
    • (1999) Protein Science , vol.8 , pp. 800-809
    • Drohat, A.C.1    TJandra, N.2    Baldisseri, D.M.3    Weber, D.J.4
  • 28
    • 0032478114 scopus 로고    scopus 로고
    • Solution structure of calcium-bound rat S100B(ββ) as determined by nuclear magnetic resonance spectroscopy
    • Drohat A.C., Baldisseri D.M., Rustandi R.R., and Weber D.J. Solution structure of calcium-bound rat S100B(ββ) as determined by nuclear magnetic resonance spectroscopy. Biochemistry 37 (1998) 2729-2740
    • (1998) Biochemistry , vol.37 , pp. 2729-2740
    • Drohat, A.C.1    Baldisseri, D.M.2    Rustandi, R.R.3    Weber, D.J.4
  • 31
    • 0026813925 scopus 로고
    • The computer program LUDI: a new method for the de novo design of enzyme inhibitors
    • Böhm H. The computer program LUDI: a new method for the de novo design of enzyme inhibitors. Journal of Computer Aided Molecular Design 6 (1992) 61-78
    • (1992) Journal of Computer Aided Molecular Design , vol.6 , pp. 61-78
    • Böhm, H.1
  • 32
    • 67349191215 scopus 로고    scopus 로고
    • Retrieved from, 2007
    • Cerius2. Retrieved from http://www.accelrys.com/products/cerius2. 2007.
    • Cerius2
  • 33
    • 13844312649 scopus 로고    scopus 로고
    • ZINC - a free database of commercially available compounds for virtual screening
    • Irwin J.J., and Shoichet B.K. ZINC - a free database of commercially available compounds for virtual screening. Journal of Chemical Information and Modeling 45 (2005) 177-182
    • (2005) Journal of Chemical Information and Modeling , vol.45 , pp. 177-182
    • Irwin, J.J.1    Shoichet, B.K.2
  • 35
    • 58949091895 scopus 로고    scopus 로고
    • antiviral compounds discovered by virtual screening of small-molecule libraries against Dengue Virus E protein
    • Zhou Z., Khaliq M., Suk J.-E., Patkar C., Li L., Kuhn R.J., and Post C.B. antiviral compounds discovered by virtual screening of small-molecule libraries against Dengue Virus E protein. ACS Chemical Biology (2008) 3
    • (2008) ACS Chemical Biology , pp. 3
    • Zhou, Z.1    Khaliq, M.2    Suk, J.-E.3    Patkar, C.4    Li, L.5    Kuhn, R.J.6    Post, C.B.7
  • 37
    • 33645716728 scopus 로고
    • Comparison of density functional and MP2 calculations on the water monomer and dimer
    • Kim K., and Jordan K.D. Comparison of density functional and MP2 calculations on the water monomer and dimer. Journal Physical Chemistry 98 (1994) 10089-10094
    • (1994) Journal Physical Chemistry , vol.98 , pp. 10089-10094
    • Kim, K.1    Jordan, K.D.2
  • 38
    • 0034506266 scopus 로고    scopus 로고
    • Efficient particle-mesh Ewald based approach to fixed and induced dipolar interactions
    • Toukmaji A., Sagui C., Board J., and Darden T. Efficient particle-mesh Ewald based approach to fixed and induced dipolar interactions. Journal Chemical Physics 113 (2000) 10913-10927
    • (2000) Journal Chemical Physics , vol.113 , pp. 10913-10927
    • Toukmaji, A.1    Sagui, C.2    Board, J.3    Darden, T.4
  • 41
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
    • Ryckaert J.-P., Ciccotti G., and Berendsen H.J.C. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. Journal Computational Physics 23 (1977) 327-341
    • (1977) Journal Computational Physics , vol.23 , pp. 327-341
    • Ryckaert, J.-P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 42
    • 0034811498 scopus 로고    scopus 로고
    • Use of MM-PBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA
    • Wang J., Morin P., Wang W., and Kollman P.A. Use of MM-PBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA. Journal of the American Chemical Society 123 (2001) 5221-5230
    • (2001) Journal of the American Chemical Society , vol.123 , pp. 5221-5230
    • Wang, J.1    Morin, P.2    Wang, W.3    Kollman, P.A.4
  • 43
    • 0034602373 scopus 로고    scopus 로고
    • Free energy calculations on dimer stability of the HIV protease using molecular dynamics and a continuum solvent model
    • Wang W., and Kollman P.A. Free energy calculations on dimer stability of the HIV protease using molecular dynamics and a continuum solvent model. Journal of Molecular Biology 303 (2000) 567-582
    • (2000) Journal of Molecular Biology , vol.303 , pp. 567-582
    • Wang, W.1    Kollman, P.A.2
  • 45
    • 84893482610 scopus 로고
    • A solution for the best rotation to relate two sets of vectors
    • Kabsch W. A solution for the best rotation to relate two sets of vectors. Acta Crystallographica A32 (1976) 922-923
    • (1976) Acta Crystallographica , vol.A32 , pp. 922-923
    • Kabsch, W.1
  • 46
    • 0031024171 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski C.A., Lombardo F., Dominy B.W., and Feeney P.J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Advanced Drug Delivery Reviews 23 (1997) 3-25
    • (1997) Advanced Drug Delivery Reviews , vol.23 , pp. 3-25
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 47
    • 67349225303 scopus 로고    scopus 로고
    • ADMET. Predictor v.1.0; Simulationsplus,inc: Lancaster, CA.
    • ADMET. Predictor v.1.0; Simulationsplus,inc: Lancaster, CA.
  • 49
    • 0030023536 scopus 로고    scopus 로고
    • Comparison between active and passive drug transport in human intestinal epithelial (caco-2) cells in vitro and human jejunum in vivo
    • Lennernäsa H., Palmb K., Fagerholma U., and Arturssonb P. Comparison between active and passive drug transport in human intestinal epithelial (caco-2) cells in vitro and human jejunum in vivo. International Journal of Pharmaceutics 127 (1996) 103-107
    • (1996) International Journal of Pharmaceutics , vol.127 , pp. 103-107
    • Lennernäsa, H.1    Palmb, K.2    Fagerholma, U.3    Arturssonb, P.4
  • 50
    • 0030056288 scopus 로고    scopus 로고
    • Improved method for estimating water solubility from octanol/water partition coefficient
    • Meylan W.M., Howard P.H., and Boethling R.S. Improved method for estimating water solubility from octanol/water partition coefficient. Environmental Toxicology and Chemistry 15 (1996) 100-106
    • (1996) Environmental Toxicology and Chemistry , vol.15 , pp. 100-106
    • Meylan, W.M.1    Howard, P.H.2    Boethling, R.S.3
  • 51
    • 0034213636 scopus 로고    scopus 로고
    • Predicting blood-brain barrier permeation from three-dimensional molecular structure
    • Crivori P., Cruciani G., Carrupt P.-A., and Testa B. Predicting blood-brain barrier permeation from three-dimensional molecular structure. Journal of Medicinal Chemistry 43 (2000) 2204-2216
    • (2000) Journal of Medicinal Chemistry , vol.43 , pp. 2204-2216
    • Crivori, P.1    Cruciani, G.2    Carrupt, P.-A.3    Testa, B.4
  • 54
    • 67349188267 scopus 로고    scopus 로고
    • Distributed Structure-searchable Toxicity (DSSTox) Public Database. Retrieved from http://www.epa.gov/ncct/dsstox1/5/2008.
    • Distributed Structure-searchable Toxicity (DSSTox) Public Database. Retrieved from http://www.epa.gov/ncct/dsstox1/5/2008.
  • 55
    • 67349221366 scopus 로고    scopus 로고
    • The Carcinogenic Potency Project. Retrieved from http://potency.berkeley.edu 1/7/2008.
    • The Carcinogenic Potency Project. Retrieved from http://potency.berkeley.edu 1/7/2008.
  • 56
    • 0033173147 scopus 로고    scopus 로고
    • Supplement to the carcinogenic potency database (CPDB): results of animal bioassays published in the general literature in 1993 to 1994 and by the National Toxicology Program in 1995 to 1996
    • Gold L.S., Manley N.B., Slone T.H., and Rohrbach L. Supplement to the carcinogenic potency database (CPDB): results of animal bioassays published in the general literature in 1993 to 1994 and by the National Toxicology Program in 1995 to 1996. Environmental Health Perspectives 107 (1999) 527-600
    • (1999) Environmental Health Perspectives , vol.107 , pp. 527-600
    • Gold, L.S.1    Manley, N.B.2    Slone, T.H.3    Rohrbach, L.4
  • 57
    • 8844287955 scopus 로고    scopus 로고
    • Assessment of the health effects of chemicals in humans: I. QSAR estimation of the maximum recommended therapeutic dose (MRTD) and no effect level (NOEL) of organic chemicals based on clinical trial data
    • Matthews E.J., Kruhlak N.L., Benz R.D., and Contrera J.F. Assessment of the health effects of chemicals in humans: I. QSAR estimation of the maximum recommended therapeutic dose (MRTD) and no effect level (NOEL) of organic chemicals based on clinical trial data. Current Drug Discovery Technologies 1 (2004) 61-76
    • (2004) Current Drug Discovery Technologies , vol.1 , pp. 61-76
    • Matthews, E.J.1    Kruhlak, N.L.2    Benz, R.D.3    Contrera, J.F.4


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