A solid-phase method for preparing human DNA from urine for diagnostic purposes

Clinical Biochemistry

Volumn 42, Issue 10-11, 2009, Pages 1128-1135

  Siddiqui, Huma ^a   Nederbragt, Alexander J ^a   Jakobsen, Kjetill S ^a  

^a UNIVERSITY OF OSLO   (Norway)

Author keywords

Automation; DNA extraction; Magnetic beads; Non invasive; Real time PCR; Urine

Indexed keywords

GENE PRODUCT; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; K RAS PROTEIN; PROTEIN DD3; PROTEIN P53; UNCLASSIFIED DRUG;

ARTICLE; AUTOMATION; CYTOLYSIS; DIAGNOSTIC TEST; DNA DETERMINATION; DNA ISOLATION; DNA PURIFICATION; DNA SEQUENCE; DNA TEMPLATE; FEMALE; GENOTYPE; HIGH THROUGHPUT SCREENING; HUMAN; INTERMETHOD COMPARISON; MALE; NUCLEIC ACID AMPLIFICATION; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RELIABILITY; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROBOTICS; SEPARATION TECHNIQUE; SOLID PHASE EXTRACTION; URINALYSIS;

ADULT; AUTOMATION; DIAGNOSTIC TECHNIQUES AND PROCEDURES; DNA; FEMALE; GENOME, HUMAN; HUMANS; MAGNETICS; MALE; MICROSPHERES; POLYMERASE CHAIN REACTION; REAGENT KITS, DIAGNOSTIC; SOLID PHASE EXTRACTION; SURFACE PROPERTIES; TIME FACTORS;

EID: 67349273730     PISSN: 00099120     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.clinbiochem.2009.03.010     Document Type: Article

References (30)

1. Goessl C. Noninvasive molecular detection of cancer-the bench and the bedside. Curr. Med. Chem. 10 (2003) 691-706
2. Anker P., Mulcahy H., and Stroun M. Circulating nucleic acids in plasma and serum as a noninvasive investigation for cancer: time for large-scale clinical studies?. Int. J. Cancer 103 (2003) 149-152
3. Bryzgunova O.E., Skvortsova T.E., Kolesnikova E.V., et al. Isolation and comparative study of cell-free nucleic acids from human urine. Ann. N. Y. Acad. Sci. 1075 (2006) 334-340
4. Milde A., Haas-Rochholz H., and Kaatsch H.J. Improved DNA typing of human urine by adding EDTA. Int. J. Leg. Med. 112 (1999) 209-210
5. Su Y.H., Wang M., Brenner D.E., et al. Human urine contains small, 150 to 250 nucleotide-sized, soluble DNA derived from the circulation and may be useful in the detection of colorectal cancer. J. Mol. Diagn. 6 (2004) 101-107
6. Haufroid V., Clippe A., Knoops B., Bernard A., and Lison D. Genotyping in urine: an interesting tool for epidemiological studies. Clin. Chem. 44 (1998) 2210-2211
7. Eissa S., Kassim S., and El-Ahmady O. Detection of bladder tumours: role of cytology, morphology-based assays, biochemical and molecular markers. Curr. Opin. Obstet. Gynecol. 15 (2003) 395-403
8. Behzadbehbahani A., Klapper P.E., Vallely P.J., and Cleator G.M. Detection of BK virus in urine by polymerase chain reaction: a comparison of DNA extraction methods. J. Virol. Methods 67 (1997) 161-166
9. Khan G., Kangro H.O., Coates P.J., and Andheath R.B. Inhibitory effects of urine on the polymerase chain reaction for cytomegalovirus DNA. J. Clin. Pathol. 44 (1991) 360-365
10. Anglès d'Auriac M., Refseth U.H., Espelund M., Moi H., Størvold G., and Jeansson S. A new automated method for isolation of Chlamydia trachomatis from urine eliminates inhibition and increases robustness for NAAT system. J. Microbiol. Methods 70 (2007) 416-423
11. Heller L.C., Davis C.R., Peak K.K., et al. Comparison of methods for DNA isolation from food samples for detection of Shiga toxin-producing Escherichia coli by real-time PCR. Appl. Environ. Microbiol. 69 (2003) 1844-1846
12. Nesbakken T., Eckner K., Hoidal H.K., and Rotterud O.J. Occurrence of Yersinia enterocolitica and Campylobacter spp. in slaughter pigs and consequences for meat inspection, slaughtering, and dressing procedures. Int. J. Food Microbiol. 80 (2003) 231-240
13. Rudi K., Larsen F., and Jakobsen K.S. Detection of toxin-producing cyanobacteria by use of paramagnetic beads for cell concentration and DNA purification. Appl. Environ. Microbiol. 64 (1998) 34-37
14. Boom R., Sol C.J., Salimans M.M., Jansen C.L., Wertheim-van Dillen P.M., and van der Noordaa J. Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 28 (1990) 495-503
15. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual. Molecular Cloning: A Laboratory Manual (1989), Laboratory Press, Cold Spring Harbor, N.Y.
16. Kielhorn E., Schofield K., and Rimm D.L. Use of magnetic enrichment for detection of carcinoma cells in fluid specimens. Cancer 94 (2002) 205-211
17. Zigeuner R.E., Riesenberg R., Pohla H., Hofstetter A., and Oberneder R. Immunomagnetic cell enrichment detects more disseminated cancer cells than immunocytochemistry in vitro. J. Urol. 164 (2000) 1834-1837
18. Prinz M., Grellner W., and Schmitt C. DNA typing of urine samples following several years of storage. Int. J. Leg. Med. 106 (1993) 75-79
19. Johnson D.J., Calderaro A.C., and Roberts K.A. Variation in nuclear DNA concentrations during urination. J. Forensic Sci. 52 (2007) 110-113
20. Garcia Moreira V, Prieto Garcia B. de la Cera T, Martinez, Alvarez Menendez FV. Elevated transrenal DNA (cell-free urine DNA) in patients with urinary tract infection compared to healthy controls. Clin. Biochem.in press. doi:10.1016/j.clinbiochem.2008.12.021.
21. Goessl C., Muller M., Heicappell R., et al. DNA-based detection of prostate cancer in urine after prostatic massage. Urology 58 (2001) 335-338
22. Zhong X.Y., Hahn D., Troeger C., et al. Cell-free DNA in urine: a marker for kidney graft rejection, but not for prenatal diagnosis?. Ann. N. Y. Acad. Sci. 945 (2001) 250-257
23. Su Y.H., Wang M., Block T.M., et al. Transrenal DNA as a diagnostic tool: important technical notes. Ann. N. Y. Acad. Sci. 1022 (2004) 81-89
24. Umansky S.R., and Tomei L.D. Transrenal DNA testing: progress and perspectives. Expert Rev. Mol. Diagn. 6 (2006) 153-163
25. Castella V., Dimo-Simonin N., Brandt-Casadevall C., et al. Forensic identification of urine samples: a comparison between nuclear and mitochondrial DNA markers. Int. J. Leg. Med. 120 (2006) 67-72
26. Srikantha M., Sergeant R., Khan T., et al. Retrospective tissue typing of the kidney donor from recipient urine. Kidney Int. 74 (2008) 952-955
27. Yasuda T., Iida R., Takeshita H., et al. A simple method of DNA extraction and STR typing from urine samples using a commercially available DNA/RNA extraction kit. J. Forensic Sci. 48 (2003) 108-110
28. Thomas R.K., Nickerson E., Simons J.F., et al. Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing. Nat. Med. 12 (2006) 852-855
29. Dahl F., Stenberg J., Fredriksson S., et al. Multigene amplification and massively parallel sequencing for cancer mutation discovery. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 9387-9392
30. Bussemakers M.J., van Bokhoven A., Verhaegh G.W., et al. DD3: a new prostate-specific gene, highly overexpressed in prostate cancer. Cancer Res. 59 (1999) 5975-5979