Genetic relatedness among Tunisian plum cultivars by random amplified polymorphic DNA analysis and evaluation of phenotypic characters

Scientia Horticulturae

Volumn 121, Issue 4, 2009, Pages 440-446

  Hend, Ben Tamarzizt ^a   Ghada, Baraket ^a   Sana, Ben Mustapha ^a   Mohamed, Marrakchi ^a   Mokhtar, Trifi ^a   Amel, Salhi Hannachi ^a  

^a FACULTÉ DES SCIENCES DE TUNIS   (Tunisia)

Author keywords

Genetic diversity; Morphology; Plum; Pomology; Prunus; RAPD

Indexed keywords

BIOASSAY; CLUSTER ANALYSIS; CROP IMPROVEMENT; CULTIVAR; DNA; FRUIT; GENETIC MARKER; GENETIC VARIATION; GERMPLASM; MOLECULAR ANALYSIS; MORPHOLOGY; PHENOTYPE; PRINCIPAL COMPONENT ANALYSIS; RELATEDNESS; VARIANCE ANALYSIS;

PRUNUS; PRUNUS DOMESTICA;

EID: 67349268453     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2009.03.009     Document Type: Article

References (43)

1. Anonyme, 2002. Arboriculture fruitière. Variétés fruitières recommendées en Tunisie. Documents techniques INRAT No. 114.
2. Aradhya M.K., Weeks C., and Simon C.J. Molecular characterization of variability and relationships among seven cultivated and selected wild species of Prunus L. using amplified fragment length polymorphism. Sciencia Horticulturae 103 (2004) 131-144
3. Aranzana M.J., Carbo J., and Arus P. Microsatellite variability in peach (Prunus persica L. Batsch): cultivar identification, marker mutation, pedigree inferences and population structure. Theoretical Applied Genetics 106 (2003) 1341-1352
4. Badenes M.L., and Parfitt D.E. Phylogenetic relationships of cultivated Prunus species from an analysis of chloroplast DNA variation. Theoretical Applied Genetics 90 (1995) 1035-1041
5. Bajashvili E.I. Studies of some species of Prunus Mill. genus. Acta Horticulturae 283 (1990) 31-34
6. Bernatzky R., and Tanskley S.D. Genetics of actin-related sequences in tomato. Theoretical and Applied Genetics 72 (1986) 314-321
7. Bortiri E., Oh S., Jiang J., Baggett S., Granger A., Weeks C., Buckingham M., Potter D., and Parfitt D.E. Phylogeny and systematics of Prunus (Rosaceae) as determined by sequence analysis of ITS and the chloroplast trnL-trnF spacer DNA. Systematic Botany 26 (2001) 797-807
8. Bouhadida M., Martin J.P., Eremin G., Pinochet J., Moreno M.A., and Gogorcena Y. Chloroplast DNA Diversity in Prunus and Its Implication on Genetic Relationships. Journal of the American Society for Horticultural Science 132 5 (2007) 670-679
9. Bouhadida M., Casas A.M., Moreno M.A., and Gogorcena Y. Molecular characterization of Miraflores peach variety and relatives using SSRs. Scientia Horticulturae 111 (2007) 140-145
10. Casas E.M., Igartua E., Balaguer G., and Moreno M.A. Genetic diversity of Prunus rootstoks analyzed by RAPD markers. Euphytica 110 (1999) 139-149
11. Crane M.B., and Lawrence W.J. The Genetics of Garden Plants (1952), MacMillan and Co., Ltd., London
12. Dosba F., Bernhard R., and Zanetto A. Importance des ressources génétiques des Prunus. Comptes rendus de l'Académie d'Agriculture de France 80 (1994) 45-57
13. Eldredge L., Ballard R., Baird W.V., and Abbott A. Application of RFLP analysis to genetic linkage mapping in peaches. Horticultural Science 27 (1992) 160-163
14. Ertekin C., Gozlekci S., Kabas O., Sonmez S., and Akinci I. Some physical, pomological and nutritional properties of two plum (Prunus domestica L.) cultivars. Journal of Food Engineering 75 4 (2006) 508-514
15. Excoffier L. Analysis of population subdivision. In: Balding D.J., Bishop M., and Cannings C. (Eds). Handbook of Statistical Genetics (2001), John Wiley & Sons, Chichester (UK) 271-307
16. Excoffier E.L., Smouse P.E., and Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondria DNA restriction sites. Genetics 131 (1992) 479-491
17. Felsenstein J. Phylip (Philogeny Interference Package) version 3.5c (1995), Departement of Genetics, University of Washington, Seattle, Washington
18. Gilbert J.E., Lewis R.V., Wilkinson M.J., and Galigari P.D.S. Developing and appropriate strategy to assess genetic variability in plant germplasm collections. Theoretica and Applied Genetics 98 (1999) 1125-1131
19. Hegi G. Illustrierte Flora yon Mitteleuropa Vol. 4 (1923), Carl-Hansen Verlag, Munich pp.1106-lll0
20. Hormaza J.I. Molecular characterization and similarity relationships among apricot (Prunus armeniaca L.) genotypes using simple sequence repeats. Theoretical and Applied Genetics 104 (2002) 321-328
21. Howard, W.L., 1945. Luther Burbank's plant contributions. California Agricultural Experiment Station Bulletin 691.
22. IPGRI (International Board for Plant Genetic Resources) and CEC (Commission of European Communities), 1984. In: Cobianchi, D., Watkins, R. (Eds.), Committee on disease resistance breeding and use of genebanks. Descriptor list for plum and allied species. pp. 31.
23. Lee S., and Wen J. A phylogenetic analysis of Prunus and the Amygdaloideae (Rosaceae) using ITS sequences of nuclear ribosomal DNA. American Journal of Botany 88 (2001) 150-160
24. Mantel N. The detection of disease clustering and generalized regression approach. Cancer Research 27 (1967) 209-220
25. Morgan D.R., Soltis D.E., and Robertson K.R. Systematic and evolutionary implications of rbcL sequence variation in Rosaceae. American Journal of Botany 81 (1994) 890-903
26. Nei M., and Li W.S. Mathematical model for studying genetic variation in terms of restriction endonuclease. Proceedings of the National Academy of Sciences (USA) 76 (1979) 5269-5273
27. Nyborn H., Rogstar S.H., and Schaal B.A. Genetic variation detected by use of the M13 'DNA fingerprint' probe in Malus, Prunus and Rubus (Rosaceae). Theoretica and Applied Genetics 79 (1990) 153-156
28. Ortiz A., Renaud R., Calzada I., and Ritter E. Analysis of plum cultivars with RAPD markers. Journal of horticultural sciences 72 1 (1997) 1-9
29. Prevost A., and Wilkinson M.J. A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theoretica and Applied Genetics 98 (1999) 107-112
30. Radicati L., Ruffa E., Valentini N., Nassi M.O., and Lepori G. Uso di marcatori molecolari per la caratterizzzione di germoplasma piemontese di susino. Proccedings of VI Convegno nazionale su: Biodiversità, opportunità e sviluppo sostenibile. Bari, 6-7 settembre (2001)
31. Röder K. Sortenkundliche Untersuchungen an Prunus domestica vol. 54 (1941), Kiihnarchiv, Berlin
32. Salesses G. Some data on the cytogenetics of plums and the origin of plums. Acta Horticulturae 48 (1975) 59-65
33. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd ed. (1989), Cold spring Harbor Laboratory, cold Spring Harbor, New York
34. SAS, 1990. SAS user's guide: SAS STAT, SAS BASIC. version 6, 4th ed. Sas incl, BOX 8000. cary, NC 27512-8000, cary; NC: SAS institute Inc.
35. StatSoft, Inc., 2001. STATISTICA (data analysis software systems), version 6. StatSoft, Inc. (www.statsoft.com), Tulsa, OK. USA.
36. Shimada T., Hayama H., Haji T., Yamaguchi M., and Yoshida M. Genetic diversity of plums characterized by random amplified polymorphic DNA (RAPD) analysis. Euphytica 109 (1999) 143-147
37. Shimada, T., 1996. Studies on phylogeny and phyletic evolution in Prunus species. PhD Thesis. Kobe Univ, Hyogo, Japan.
38. Uematsu C., Sasakuma T., and Ogihara Y. Phylogenetic relation-ships in the stone-fruit group of Prunus as revealed by restriction fragment analysis of chloroplast DNA. The Japanese Journal of Genetics 66 (1991) 59-69
39. Ward J.H. Hierarchical grouping to optimize an objective function. Journal of American Statistical Association 58 (1963) 236-244
40. Watkins R. Cherry, plum, peach, apricot and almond. In: Simmonds N.W. (Ed). Evolution of Crop Plants (1976), Longman, London 242-247
41. Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A., and Tingey S. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18 (1990) 6531-6535
42. Wright S. The genetical structure of populations. Annals of Eugenics 15 (1951) 323-354
43. Zohary D. Is the European plum, Prunus domestica L., a P. cerasifera EHRH× P. spinosa L. allopolyploid. Euphytica 60 (1992) 75-77