Impact of a single amino acid in the variable region 2 of the Old World monkey TRIM5α SPRY (B30.2) domain on anti-human immunodeficiency virus type 2 activity

Virology

Volumn 388, Issue 1, 2009, Pages 160-168

  Kono, Ken ^a   Bozek, Katarzyna ^b   Domingues, Francisco S ^b   Shioda, Tatsuo ^a   Nakayama, Emi E ^a  

^a OSAKA UNIVERSITY   (Japan)

^b MAX PLANCK INSTITUTE FOR INFORMATICS   (Germany)

Author keywords

Baboon; Cynomolgus monkey; Human immunodeficiency virus; Rhesus monkey; TRIM5

Indexed keywords

AMINO ACID; PROLINE; SERINE; TRIPARTITE MOTIF PROTEIN 5;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANTIVIRAL ACTIVITY; ARTICLE; BABOON; HUMAN; HUMAN CELL; HUMAN CELL CULTURE; HUMAN IMMUNODEFICIENCY VIRUS 2; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; IMMUNOGLOBULIN VARIABLE REGION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RHESUS MONKEY; STRUCTURAL GENOMICS; T LYMPHOCYTE; VIRUS REPLICATION;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMALS; CARRIER PROTEINS; CELLS, CULTURED; CERCOPITHECIDAE; CLONING, MOLECULAR; GENE EXPRESSION REGULATION; HIV ANTIBODIES; HIV-2; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; SPECIES SPECIFICITY;

CERCOPITHECIDAE; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 2; MACACA FASCICULARIS; MACACA MULATTA; PAPIO; PRIMATES;

EID: 67349266991     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2009.03.004     Document Type: Article

References (34)

1. Agy M.B., Frumkin L.R., Corey L., Coombs R.W., Wolinsky S.M., Koehler J., Morton W.R., and Katze M.G. Infection of Macaca nemestrina by human immunodeficiency virus type-1. Science 257 (1992) 103-106
2. Arthur L.O., Bess Jr. J.W., Waters D.J., Pyle S.W., Kelliher J.C., Nara P.L., Krohn K., Robey W.G., Langlois A.J., Gallo R.C., and Fischinger P.J. Challenge of chimpanzees (Pan troglodytes) immunized with human immunodeficiency virus envelope glycoprotein gp120. J. Virol. 63 (1989) 5046-5053
3. Barnett S.W., Murthy K.K., Herndier B.G., and Levy J.A. An AIDS-like condition induced in baboons by HIV-2. Science 266 (1994) 642-646
4. Brennan G., Kozyrev Y., Kodama T., and Hu S.L. Novel TRIM5 isoforms expressed by Macaca nemestrina. J. Virol. 81 (2007) 12210-12217
5. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 (2004) 1792-1797
6. Eswar N., Marti-Renom M.A., Webb B., Madhusudhan M.S., Eramian D., Shen M., Pieper U., and Sali A. Comparative protein structure modeling with modeller. Curr. Protoc. Bioinform. (2006) 5.6.1-5.6.30
7. Gruetter C., Briand C., Capitani G., Mittl P.R., Papin S., Tschopp J., and Gruetter M.G. Structure of the PRYSPRY-domain: implications for autoinflammatory diseases. FEBS Lett. 580 (2006) 99-106
8. Hahn B.H., Shaw G.M., De Cock K.M., and Sharp P.M. AIDS as a zoonosis: scientific and public health implications. Science 287 (2000) 607-614
9. Hatziioannou T., Perez-Caballero D., Yang A., Cowan S., and Bieniasz P.D. Retrovirus resistance factors Ref1 and Lv1 are species-specific variants of TRIM5α. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 10774-10779
10. Ho S.N., Hunt H.D., Horton R.M., Pullen J.K., and Pease L.R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77 (1989) 51-59
11. James L.C., Keeble A.H., Khan Z., Rhodes D.A., and Trowsdale J. Structural basis for PRYSPRY-mediated tripartite motif (TRIM) protein function. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 6200-6205
12. Kecksova Z., Ylinen L.M., and Towers G.J. The human and African green monkey TRIM5α genes encode Ref1 and Lv1 retroviral restriction factor activities. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 10780-10785
13. Keeble A.H., Khan Z., Forster A., and James L.C. Trim21 is an IgG receptor that is structurally, thermodynamically, and kinetically conserved. Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 6045-6050
14. Kono K., Song H., Shingai Y., Shioda T., and Nakayama E.E. Comparison of anti-viral activity of rhesus monkey and cynomolgus monkey TRIM5αs against human immunodeficiency virus type 2 infection. Virology 373 (2008) 447-456
15. Locher C.P., Blackbourn D.J., Castro B.A., Brasky K.M., and Levy J.A. Susceptibility of peripheral blood mononuclear cells from gorillas, orangutans and baboons to diverse HIV isolates. AIDS 10 (1996) 1438-1440
16. Locher C.P., Barnett S.W., Herndier B.G., Blackbourn D.J., Reyes-Teran G., Murthy K.K., Brasky K.M., Hubbard G.B., Reinhart T.A., Haase A.T., and Levy J.A. Human immunodeficiency virus-2 infection in baboons is an animal model for human immunodeficiency virus pathogenesis in humans. Arch. Pathol. Lab. Med. 122 (1998) 523-533
17. Locher C.P., Witt S.A., Herndier B.G., Tenner-Racz K., Racz P., and Levy J.A. Baboons as an animal model for human immunodeficiency virus pathogenesis and vaccine development. Immunol. Rev. 183 (2001) 127-140
18. Lusso P., Markham P.D., Ranki A., Earl P., Moss B., Dorner F., Gallo R.C., and Krohn K.J. Cell-mediated immune response toward viral envelope and core antigens in gibbon apes (Hylobates lar) chronically infected with human immunodeficiency virus-1. J. Immunol. 141 (1988) 2467-2473
19. Maegawa H., Nakayama E.E., Kuroishi A., and Shioda T. Silencing of tripartite motif protein (TRIM) 5α mediated anti-HIV-1 activity by truncated mutant of TRIM5α. J. Virol. Methods 151 (2008) 249-256
20. Nakayama E.E., Miyoshi H., Nagai Y., and Shioda T. A specific region of 37 amino acid residues in the SPRY (B30.2) domain of African green monkey TRIM5α determines species-specific restriction of simian immunodeficiency virus SIVmac infection. J. Virol. 79 (2005) 8870-8877
21. Nakayama E.E., Maegawa H., and Shioda T. A dominant-negative effect of cynomolgus monkey tripartite motif protein TRIM5α on anti-simian immunodeficiency virus SIVmac activity of an African green monkey orthologue. Virology 350 (2006) 158-163
22. Newman R.M., Hall L., Connole M., Chen G.L., Sato S., Yuste E., Diehl W., Hunter E., Kaur A., Miller G.M., and Johnson W.E. Balancing selection and the evolution of functional polymorphism in Old World monkey TRIM5α. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 19134-19139
23. Notredame C., Higgins D.G., and Heringa J. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302 (2000) 205-217
24. Ohkura S., Yap M.W., Sheldon T., and Stoye J.P. All three variable regions of the TRIM5α B30.2 domain can contribute to the specificity of retrovirus restriction. J. Virol. 80 (2006) 8554-8565
25. Perez-Caballero D., Hatziioannou T., Yang A., Cowan S., and Bieniasz P.D. Human tripartite motif 5α domains responsible for retrovirus restriction activity and specificity. J. Virol. 79 (2005) 8969-8978
26. Peron M.J., Stremlau M., and Sodroski J. Two surface-exposed elements of the B30.2/SPRY domain as potency determinants of N-tropic murine leukemia virus restriction by human TRIM5α. J. Virol. 80 (2006) 5631-5636
27. Reymond A., Meroni G., Fantozzi A., Merla G., Cairo S., Luzi L., Riganelli D., Zanaria E., Messali S., Cainarca S., Guffanti A., Minucci S., Pelicci P.G., and Ballabio A. The tripartite motif family identifies cell compartments. EMBO J. 20 (2001) 2140-2151
28. Sawyer S.L., Wu L.I., Emerman M., and Malik H.S. Positive selection of primate TRIM5α identifies a critical species-specific retroviral restriction domain. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 2832-2837
29. Song H., Nakayama E.E., Yokoyama M., Sato H., Levy J.A., and Shioda T. A single amino acid of the human immunodeficiency virus type 2 capsid affects its replication in the presence of cynomolgus monkey and human TRIM5αs. J. Virol. 81 (2007) 7280-7285
30. Stremlau M., Owens C.M., Perron M.J., Kiessling M., Autissier P., and Sodroski J. The cytoplasmic body component TRIM5α restricts HIV-1 infection in Old World monkeys. Nature 427 (2004) 848-853
31. Stremlau M., Perron M., Welikala S., and Sodroski J. Species-specific variation in the B30.2(SPRY) domain of TRIM5α determines the potency of human immunodeficiency virus restriction. J. Virol. 79 (2005) 3139-3145
32. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
33. Yap M.W., Nisole S., Lynch C., and Stoye J.P. Trim5α protein restricts both HIV-1 and murine leukemia virus. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 10786-10791
34. Yap M.W., Nisole S., and Stoye J.P. A single amino acid change in the SPRY domain of human Trim5α leads to HIV-1 restriction. Curr. Biol. 15 (2005) 73-78