Automated analysis of behavior in zebrafish larvae

Behavioural Brain Research

Volumn 203, Issue 1, 2009, Pages 127-136

  Creton, Robbert ^a  

^a BROWN UNIVERSITY   (United States)

Author keywords

Automated image analysis; Danio rerio; High throughput imaging; Left right asymmetry; Optomotor response

Indexed keywords

ANIMAL BEHAVIOR; ANIMAL TISSUE; ARTICLE; AUTOMATION; BIOASSAY; CONTROLLED STUDY; EMBRYO; EMBRYO DEVELOPMENT; IMAGE ANALYSIS; IMAGING SYSTEM; LARVA; LARVAL DEVELOPMENT; NONHUMAN; PRIORITY JOURNAL; ZEBRA FISH;

ANIMALS; AUTOMATIC DATA PROCESSING; BEHAVIOR, ANIMAL; LARVA; LOCOMOTION; SOFTWARE; SWIMMING; ZEBRAFISH;

EID: 67349223967     PISSN: 01664328     EISSN: 18727549     Source Type: Journal    
DOI: 10.1016/j.bbr.2009.04.030     Document Type: Article

References (47)

1. Ahmad N., Long S., and Rebagliati M. A southpaw joins the roster: the role of the zebrafish nodal-related gene southpaw in cardiac lr asymmetry. Trends Cardiovasc Med 14 (2004) 43-49
2. Aizawa H., Bianco I.H., Hamaoka T., Miyashita T., Uemura O., Concha M.L., et al. Laterotopic representation of left-right information onto the dorso-ventral axis of a zebrafish midbrain target nucleus. Curr Biol 15 (2005) 238-243
3. Aizawa H., Goto M., Sato T., and Okamoto H. Temporally regulated asymmetric neurogenesis causes left-right difference in the zebrafish habenular structures. Dev Cell 12 (2007) 87-98
4. Amack J.D., and Yost H.J. The t box transcription factor no tail in ciliated cells controls zebrafish left-right asymmetry. Curr Biol 14 (2004) 685-690
5. Andrew R.J., Dharmaretnam M., Gyori B., Miklosi A., Watkins J.A., and Sovrano V.A. Precise endogenous control of involvement of right and left visual structures in assessment by zebrafish. Behav Brain Res 196 (2009) 99-105
6. Aw S., and Levin M. What's left in asymmetry?. Dev Dyn 237 (2008) 3453-3463
7. Barros T.P., Alderton W.K., Reynolds H.M., Roach A.G., and Berghmans S. Zebrafish: an emerging technology for in vivo pharmacological assessment to identify potential safety liabilities in early drug discovery. Br J Pharmacol 154 (2008) 1400-1413
8. Barth K.A., Miklosi A., Watkins J., Bianco I.H., Wilson S.W., and Andrew R.J. Fsi zebrafish show concordant reversal of laterality of viscera, neuroanatomy, and a subset of behavioral responses. Curr Biol 15 (2005) 844-850
9. Berghmans S., Hunt J., Roach A., and Goldsmith P. Zebrafish offer the potential for a primary screen to identify a wide variety of potential anticonvulsants. Epilepsy Res 75 (2007) 18-28
10. Brockerhoff S.E. Measuring the optokinetic response of zebrafish larvae. Nat Protoc 1 (2006) 2448-2451
11. Brockerhoff S.E., Hurley J.B., Janssen-Bienhold U., Neuhauss S.C., Driever W., and Dowling J.E. A behavioral screen for isolating zebrafish mutants with visual system defects. Proc Natl Acad Sci USA 92 (1995) 10545-10549
12. Burgess H.A., and Granato M. Modulation of locomotor activity in larval zebrafish during light adaptation. J Exp Biol 210 (2007) 2526-2539
13. Burgess H.A., and Granato M. The neurogenetic frontier-lessons from misbehaving zebrafish. Brief Funct Genomic Proteomic 7 (2008) 474-482
14. Carpenter A.E. Image-based chemical screening. Nat Chem Biol 3 (2007) 461-465
15. Concha M.L., Russell C., Regan J.C., Tawk M., Sidi S., Gilmour D.T., et al. Local tissue interactions across the dorsal midline of the forebrain establish cns laterality. Neuron 39 (2003) 423-438
16. Emran F., Rihel J., and Dowling J.E. A behavioral assay to measure responsiveness of zebrafish to changes in light intensities. J Vis Exp 20 (2008) 923
17. Essner J.J., Amack J.D., Nyholm M.K., Harris E.B., and Yost H.J. Kupffer's vesicle is a ciliated organ of asymmetry in the zebrafish embryo that initiates left-right development of the brain, heart and gut. Development 132 (2005) 1247-1260
18. Facchin L., Burgess H.A., Siddiqi M., Granato M., and Halpern M.E. Determining the function of zebrafish epithalamic asymmetry. Philos Trans R Soc Lond B Biol Sci (2008)
19. Fleisch V.C., and Neuhauss S.C. Visual behavior in zebrafish. Zebrafish 3 (2006) 191-201
20. Flinn L., Bretaud S., Lo C., Ingham P.W., and Bandmann O. Zebrafish as a new animal model for movement disorders. J Neurochem 106 (2008) 1991-1997
21. Gamse J.T., Kuan Y.S., Macurak M., Brosamle C., Thisse B., Thisse C., et al. Directional asymmetry of the zebrafish epithalamus guides dorsoventral innervation of the midbrain target. Development 132 (2005) 4869-4881
22. Gamse J.T., Thisse C., Thisse B., and Halpern M.E. The parapineal mediates left-right asymmetry in the zebrafish diencephalon. Development 130 (2003) 1059-1068
23. Gilmour D.T., Maischein H.M., and Nusslein-Volhard C. Migration and function of a glial subtype in the vertebrate peripheral nervous system. Neuron 34 (2002) 577-588
24. Hicks C., Sorocco D., and Levin M. Automated analysis of behavior: a computer-controlled system for drug screening and the investigation of learning. J Neurobiol 66 (2006) 977-990
25. Hilfinger A., and Julicher F. The chirality of ciliary beats. Phys Biol 5 (2008) 16003
26. Hirokawa N., Tanaka Y., Okada Y., and Takeda S. Nodal flow and the generation of left-right asymmetry. Cell 125 (2006) 33-45
27. Jones T.R., Kang I.H., Wheeler D.B., Lindquist R.A., Papallo A., Sabatini D.M., et al. Cellprofiler analyst: data exploration and analysis software for complex image-based screens. BMC Bioinformatics 9 (2008) 482
28. Kari G., Rodeck U., and Dicker A.P. Zebrafish: an emerging model system for human disease and drug discovery. Clin Pharmacol Ther 82 (2007) 70-80
29. Kimmel C.B., Ballard W.W., Kimmel S.R., Ullmann B., and Schilling T.F. Stages of embryonic development of the zebrafish. Dev Dyn 203 (1995) 253-310
30. Kramer-Zucker A.G., Olale F., Haycraft C.J., Yoder B.K., Schier A.F., and Drummond I.A. Cilia-driven fluid flow in the zebrafish pronephros, brain and kupffer's vesicle is required for normal organogenesis. Development 132 (2005) 1907-1921
31. Kreiling J.A., Balantac Z.L., Crawford A.R., Ren Y., Toure J., Zchut S., et al. Suppression of the endoplasmic reticulum calcium pump during zebrafish gastrulation affects left-right asymmetry of the heart and brain. Mech Dev 125 (2008) 396-410
32. Kreiling J.A., Prabhat, Williams G., and Creton R. Analysis of kupffer's vesicle in zebrafish embryos using a cave automated virtual environment. Dev Dyn 236 (2007) 1963-1969
33. Levin M., and Palmer A.R. Left-right patterning from the inside out: widespread evidence for intracellular control. Bioessays 29 (2007) 271-287
34. Lodish H., Berk A., Zipursky L.S., Matsudaira P., Baltimore D., and Darnell J. Molecular cell biology. 4th ed. (2000), Freeman, W.H., New York
35. McManus C. Reversed bodies, reversed brains, and (some) reversed behaviors: of zebrafish and men. Dev Cell 8 (2005) 796-797
36. Muto A., Orger M.B., Wehman A.M., Smear M.C., Kay J.N., Page-McCaw P.S., et al. Forward genetic analysis of visual behavior in zebrafish. PLoS Genet 1 (2005) e66
37. Nasevicius A., and Ekker S.C. Effective targeted gene 'knockdown' in zebrafish. Nat Genet 26 (2000) 216-220
38. Neumann B., Held M., Liebel U., Erfle H., Rogers P., Pepperkok R., et al. High-throughput RNAI screening by time-lapse imaging of live human cells. Nat Methods 3 (2006) 385-390
39. Ninkovic J., and Bally-Cuif L. The zebrafish as a model system for assessing the reinforcing properties of drugs of abuse. Methods 39 (2006) 262-274
40. Pather S., and Gerlai R. Shuttle box learning in zebrafish (danio rerio). Behav Brain Res 196 (2009) 323-327
41. Peeters H., and Devriendt K. Human laterality disorders. Eur J Med Genet 49 (2006) 349-362
42. Sagasti A. Three ways to make two sides: genetic models of asymmetric nervous system development. Neuron 55 (2007) 345-351
43. Schneider I., Houston D.W., Rebagliati M.R., and Slusarski D.C. Calcium fluxes in dorsal forerunner cells antagonize beta-catenin and alter left-right patterning. Development 135 (2008) 75-84
44. Schottenfeld J., Sullivan-Brown J., and Burdine R.D. Zebrafish curly up encodes a pkd2 ortholog that restricts left-side-specific expression of southpaw. Development 134 (2007) 1605-1615
45. Sprague J., Bayraktaroglu L., Bradford Y., Conlin T., Dunn N., Fashena D., et al. The zebrafish information network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucl Acids Res 36 (2008) D768-D772
46. Tran T.C., Sneed B., Haider J., Blavo D., White A., Aiyejorun T., et al. Automated, quantitative screening assay for antiangiogenic compounds using transgenic zebrafish. Cancer Res 67 (2007) 11386-11392
47. Wang X., and Yost H.J. Initiation and propagation of posterior to anterior (pa) waves in zebrafish left-right development. Dev Dyn 237 (2008) 3640-3647