Characterization, development and exploitation of EST-derived microsatellites in Porphyra haitanensis Chang et Zheng (Bangiales, Rhodophyta)

Journal of Applied Phycology

Volumn 21, Issue 3, 2009, Pages 367-374

  Xie, Chao Tian ^a   Chen, Chang Sheng ^a   Ji, De Hua ^a   Xu, Yan ^a  

^a JIMEI UNIVERSITY   (China)

Author keywords

Expressed sequence tag simple sequence repeats; Genetic variation; Microsatellite; Porphyra haitanensis

Indexed keywords

BANGIALES; PORPHYRA; PORPHYRA HAITANENSIS; RHODOPHYTA;

EID: 67349222213     PISSN: 09218971     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10811-008-9379-4     Document Type: Article

References (33)

1. D Botstein RL White M Skolnick RW Davis 1980 Construction of a genetic linkage map in man using restriction fragment length polymorphisms Am J Hum Genet 32 314 331
2. L Cardle L Ratnsay D Milbourne M Macaulay D Marshall R Waugh 2000 Computational and experimental characterization of physically clustered simple sequence repeats in plants Genetics 156 847 854
3. JR Ellis JM Burke 2007 EST-SSRs as a resource for population genetic analyses Heredity 99 125 132 (Pubitemid 47123480)
4. XL Fan YJ Fang SN Hu GC Wang 2007 Generation and analysis of 5318 expressed sequence tags from the filamentous sporophyte of Porphyra Haitanensis (Rhodophyta) J Phycol 43 1287 1294 (Pubitemid 350221961)
5. Hamrick JL (1987) Gene flow and the distribution of genetic variation in plant populations. In: Urbanska KM (ed) Differentiation patterns in higher plants. Academic, New York, pp 53-67
6. JH Jia P Wang DM Jin XP Qu Q Wang CY Li 2000 The application of RAPD Markers in diversity detection and variety identification of Porphyra Acta Bot Sin 42 403 407 (Pubitemid 30448678)
7. RV Kantety RM La DE Matthews ME Sorrells 2002 Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat Plant Mol Biol 48 501 510 (Pubitemid 34415968)
8. EK Lee SB Seo TH Kim SK Sung G An CH Lee 2000 Analysis of expressed sequence tags of Porphyra yezoensis Mol Cell 10 338 342
9. Q Li JM Wan 2005 SSRhunter: developmet of a local searching software for SSR sites Hereditas 27 808 810
10. BQ Liu QG Zeng QJ Luo YJ Wang SH Li 2005 Isolation of microsafellite loci from dbEST of algae Porphyra yezoensis and primer amplification of interspecies transfer Oceanol Limnol Sin 36 248 254
11. AE Melchinger J Boppenmaie BS Dhillon WG Pollmer RG Herrmann 1992 Genetic diversity for RFLPs in European maize inbreds. II Relation to performance of hybrids within versus between heterotic groups for forage traits Theor App Genet 84 672 681
12. M Nei 1972 Genetic distance between populations Anim Nat 106 283 292
13. I Nikaido E Asamizu M Nakajima Y Nakamura N Saga S Tabata 2000 Generation of 10,154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyra yezoensis DNA Res 7 223 227
14. GX Pang GC Wang SN Hu CK Zeng 2005 Acquirement and analysis of expressed sequence tags of filamentous sporophyte of Porphyra haitanensis Oceanol Limnol Sin 36 452 458
15. LM Rota RV Kantety JK Yu ME Sorrells 2005 Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat,and barley BMC Genomics 6 23 34 (Pubitemid 41357712)
16. KV Rajeev G Andreas ES Mark 2005 Genic microsatellite markers in plants: features and applications Trends Biotechnol 23 48 55 (Pubitemid 40075526)
17. S Rudd 2003 Expressed sequence tags: alternative or complement to whole genome sequences? Trends Plant Sci 8 321 329 (Pubitemid 36996633)
18. D Sahoo XR Tang C Yarish 2002 Porphyra-the economic seaweed as a new experimental system Curr Sci 83 1313 1316
19. JW Sun T Liu BT Guo DM Jin ML Weng YB Feng 2006 Development of SSR primers from EST sequences and their application in germplasm identification of Porphyra lines (Rhodophyta) Eur J Phycol 41 329 336 (Pubitemid 44638247)
20. S Temnykh G DeClerck A Lukashova L Lipovich S Cartinhour SR McCouch 2001 Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential Genome Res 11 1441 1452 (Pubitemid 32771552)
21. RK Varshney T Thiel N Stein P Langridge A Graner 2002 In silico analysis of frequency and distribution of microsatellites in ESTs of some cereal species Cell Mol Biol Lett 7 537 546 (Pubitemid 35345803)
22. JR Waaland JW Stiller PD Cheng 2004 Macroalgae candidates for genomics J Phycol 45 26 33
23. CB Wang WZ Guo CP Cai TZ Zhang 2006 Characterization, development and exploitation of EST-derived microsatellites in Gossypium raimondii Ulbrich Chin Sci Bull 51 5 557 561 (Pubitemid 44422180)
24. Wang MQ, Hu JJ, Zhuang YY, Zhang L, Liu W, Mao YX (2007) In silico screening for microsatellite markers from expressed sequence tags of Porphyra yezoensis (Bangiales, Rhodophyta). J Ocean Univ China (Oceanic and Coastal Sea Research) 6:161-166 doi: 10.1007/s11802-007-0161-z
25. JL Weber 1990 Informativeness of human (dC-dA)n•(dG-dT)n polymorphisms Genomics 7 524 530 (Pubitemid 20244455)
26. CT Xie DH Ji CS Chen Y Xu Y Zhang 2007 Application of ISSR markers in germplasm identification of different color's Porphyra haitanensis filament strains J Fish Sci China 31 105 111
27. CT Xie CS Chen DH Ji Y Xu YJ Xu 2008 Establishment of SRAP molecular marker reaction system for Porphyra haitanensis and genetic analyses of germplasm materials Prog Nat Sci 18 247 253
28. MJ Xu YX Mao XC Zhang XJ Zhou ZH Sui HL Zhou 2005 Bioinformatic analysis of expressed sequence tags from sporophyte of Porphyra yezoensis Prog Nat Sci 12 24 34
29. GP Yang HS Shen P Xu XC Zhang 2002 Analysis of expressed sequence tags of filamentous sporophyte of Porphyra yezoensis High Tech Lett 12 93 97 (Pubitemid 34305083)
30. R Yang BQ Liu QJ Luo YJ Wang XC Zhou JX Dai 2002 Genetic variation of Porphyra haitanensis by applying AFLP High Tech Lett 12 83 86
31. Yeh FC, Young RC, Boyle TBJ, Ye ZH, Mao JX (1997) POPGENE,the user-friendly shareware for population genetic analysis. MolecularBiology and Biotechnology Centre, University of Alberta, Edmonton,Alberta, Canada
32. Zhang XC, Qin S, Ma JH, Xu P (2005) The genetics of marine algae. China Agriculture Press, Beijing
33. ZH Zuo CG Wang XH Cao Y Su LJ Liao YX Chen 2006 Isolation and characterization of microsatellite loci from a commercial cultivar of Porphyra haitanensis Mol Ecol Notes 7 522 524