Developing a genetic approach to investigate the mechanism of mitochondrial competence for DNA import

Biochimica et Biophysica Acta - Bioenergetics

Volumn 1787, Issue 5, 2009, Pages 320-327

  Weber Lotfi, Frédérique ^a   Ibrahim, Noha ^a,b   Boesch, Pierre ^a,b   Cosset, Anne ^a   Konstantinov, Yuri ^c   Lightowlers, Robert N ^b   Dietrich, André ^a  

^a INST DE BIOL MOLEC DES PLANTES   (France)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

^c SIBERIAN INSTITUTE OF PLANT PHYSIOLOGY AND BIOCHEMISTRY   (Russian Federation)

Author keywords

DNA import competence; Membrane transport; Mitochondrial transfection; Mitochondrion; VDAC; Yeast mutant

Indexed keywords

MITOCHONDRIAL DNA; VOLTAGE DEPENDENT ANION CHANNEL;

ANIMAL CELL; ARTICLE; DNA DETERMINATION; EUKARYOTE; GENE; GENETIC ANALYSIS; GENETIC SCREENING; GENETIC TRANSFORMATION; HUMAN; HUMAN CELL; MITOCHONDRIAL GENE; MITOCHONDRIAL MEMBRANE; MOLECULAR MECHANICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT BREEDING; PRIORITY JOURNAL; RAT; SACCHAROMYCES CEREVISIAE; VDAC 1 GENE; VDAC 2 GENE;

ANIMALS; CARLAVIRUS; DNA, FUNGAL; DNA, MITOCHONDRIAL; DNA, PLANT; GENE DELETION; GENOME; HUMANS; MAMMALS; MITOCHONDRIA; PLASMIDS; SACCHAROMYCES CEREVISIAE; VOLTAGE-DEPENDENT ANION CHANNEL 1; VOLTAGE-DEPENDENT ANION CHANNEL 2; VOLTAGE-DEPENDENT ANION CHANNELS; ZEA MAYS;

EUKARYOTA; MAMMALIA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 67349183376     PISSN: 00052728     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbabio.2008.11.001     Document Type: Article

References (42)

1. Andersson S.G., Karlberg O., Canback B., and Kurland C.G. On the origin of mitochondria: a genomics perspective. Philos. Trans. R. Soc. Lond. B Biol. Sci. 358 (2003) 165-179
2. Dyall S.D., Brown M.T., and Johnson P.J. Ancient invasions: from endosymbionts to organelles. Science 304 (2004) 253-257
3. Martin W., and Muller M. The hydrogen hypothesis for the first eukaryote. Nature 392 (1998) 37-41
4. Moreira D., and Lopez-Garcia P. Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis. J. Mol. Evol. 47 (1998) 517-530
5. Thorsness P.E., and Fox T.D. Escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisiae. Nature 346 (1990) 376-379
6. Kyriakouli D.S., Boesch P., Taylor R.W., and Lightowlers R.N. Progress and prospects: gene therapy for mitochondrial DNA disease. Gene Ther. 15 (2008) 1017-1023
7. Schon E.A., and DiMauro S. Mitochondrial mutations: genotype to phenotype. Novartis Found. Symp. 287 (2007) 214-233
8. Beal M.F. Mitochondria and neurodegeneration. Novartis Found. Symp. 287 (2007) 183-196
9. Trifunovic A., Wredenberg A., Falkenberg M., Spelbrink J.N., Rovio A.T., Bruder C.E., Bohlooly Y.M., Gidlof S., Oldfors A., Wibom R., Tornell J., Jacobs H.T., and Larsson N.G. Premature ageing in mice expressing defective mitochondrial DNA polymerase. Nature 429 (2004) 417-423
10. Mackenzie S., and McIntosh L. Higher plant mitochondria. Plant Cell 11 (1999) 571-586
11. Thomas C.M., and Nielsen K.M. Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol. 3 (2005) 711-721
12. Dubnau D. DNA uptake in bacteria. Annu. Rev. Microbiol. 53 (1999) 217-244
13. Johnsborg O., Eldholm V., and Havarstein L.S. Natural genetic transformation: prevalence, mechanisms and function. Res. Microbiol. 158 (2007) 767-778
14. Burton B.M., Marquis K.A., Sullivan N.L., Rapoport T.A., and Rudner D.Z. The ATPase SpoIIIE transports DNA across fused septal membranes during sporulation in Bacillus subtilis. Cell 131 (2007) 1301-1312
15. Unseld M., Marienfeld J.R., Brandt P., and Brennicke A. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat. Genet. 15 (1997) 57-61
16. Koulintchenko M., Konstantinov Y., and Dietrich A. Plant mitochondria actively import DNA via the permeability transition pore complex. EMBO J. 22 (2003) 1245-1254
17. Koulintchenko M., Temperley R.J., Mason P.A., Dietrich A., and Lightowlers R.N. Natural competence of mammalian mitochondria allows the molecular investigation of mitochondrial gene expression. Hum. Mol. Genet. 15 (2006) 143-154
18. Blachly-Dyson E., Peng S., Colombini M., and Forte M. Selectivity changes in site-directed mutants of the VDAC ion channel: structural implications. Science 247 (1990) 1233-1236
19. Blachly-Dyson E., Song J., Wolfgang W.J., Colombini M., and Forte M. Multicopy suppressors of phenotypes resulting from the absence of yeast VDAC encode a VDAC-like protein. Mol. Cell. Biol. 17 (1997) 5727-5738
20. Daum G., Bohni P.C., and Schatz G. Import of proteins into mitochondria. Cytochrome b2 and cytochrome c peroxidase are located in the intermembrane space of yeast mitochondria. J. Biol. Chem. 257 (1982) 13028-13033
21. Leon P., Walbot V., and Bedinger P. Molecular analysis of the linear 2.3 kb plasmid of maize mitochondria: apparent capture of tRNA genes. Nucleic Acids Res. 17 (1989) 4089-4099
22. Rubino L., Burgyan J., and Russo M. Molecular cloning and complete nucleotide sequence of carnation Italian ringspot tombusvirus genomic and defective interfering RNAs. Arch. Virol. 140 (1995) 2027-2039
23. Shepherd D., and Garland P.B. The kinetic properties of citrate synthase from rat liver mitochondria. Biochem. J. 114 (1969) 597-610
24. McGregor A., Temperley R., Chrzanowska-Lightowlers Z.M., and Lightowlers R.N. Absence of expression from RNA internalised into electroporated mammalian mitochondria. Mol. Genet. Genomics 265 (2001) 721-729
25. Rabilloud T., Strub J.M., Luche S., van Dorsselaer A., and Lunardi J. A comparison between Sypro Ruby and ruthenium II tris (bathophenanthroline disulfonate) as fluorescent stains for protein detection in gels. Proteomics 1 (2001) 699-704
26. Giege P., Rayapuram N., Meyer E.H., Grienenberger J.M., and Bonnard G. CcmF(C) involved in cytochrome c maturation is present in a large sized complex in wheat mitochondria. FEBS Lett. 563 (2004) 165-169
27. Yehezkel G., Abu-Hamad S., and Shoshan-Barmatz V. An N-terminal nucleotide-binding site in VDAC1: involvement in regulating mitochondrial function. J. Cell Physiol. 212 (2007) 551-561
28. Salinas T., Duchene A.M., Delage L., Nilsson S., Glaser E., Zaepfel M., and Marechal-Drouard L. The voltage-dependent anion channel, a major component of the tRNA import machinery in plant mitochondria. Proc. Natl. Acad. Sci. USA 103 (2006) 18362-18367
29. Lee A.C., Xu X., Blachly-Dyson E., Forte M., and Colombini M. The role of yeast VDAC genes on the permeability of the mitochondrial outer membrane. J. Membr. Biol. 161 (1998) 173-181
30. Chen C., Ko Y., Delannoy M., Ludtke S.J., Chiu W., and Pedersen P.L. Mitochondrial ATP synthasome: three-dimensional structure by electron microscopy of the ATP synthase in complex formation with carriers for Pi and ADP/ATP. J. Biol. Chem. 279 (2004) 31761-31768
31. Detke S., and Elsabrouty R. Identification of a mitochondrial ATP synthase-adenine nucleotide translocator complex in Leishmania. Acta Trop. 105 (2008) 16-20
32. Susek R.E., and Lindquist S.L. hsp26 of Saccharomyces cerevisiae is related to the superfamily of small heat shock proteins but is without a demonstrable function. Mol. Cell. Biol. 9 (1989) 5265-5271
33. Bentley N.J., Fitch I.T., and Tuite M.F. The small heat-shock protein Hsp26 of Saccharomyces cerevisiae assembles into a high molecular weight aggregate. Yeast 8 (1992) 95-106
34. White H.E., Orlova E.V., Chen S., Wang L., Ignatiou A., Gowen B., Stromer T., Franzmann T.M., Haslbeck M., Buchner J., and Saibil H.R. Multiple distinct assemblies reveal conformational flexibility in the small heat shock protein Hsp26. Structure 14 (2006) 1197-1204
35. Franzmann T.M., Menhorn P., Walter S., and Buchner J. Activation of the chaperone Hsp26 is controlled by the rearrangement of its thermosensor domain. Mol. Cell 29 (2008) 207-216
36. Tatsuta T., Model K., and Langer T. Formation of membrane-bound ring complexes by prohibitins in mitochondria. Mol. Biol. Cell 16 (2005) 248-259
37. Davis C.B., Smith K.E., Campbell Jr. B.N., and Hammes G.G. The ATP binding site of the yeast plasma membrane proton-translocating ATPase. J. Biol. Chem. 265 (1990) 1300-1305
38. Sickmann A., Reinders J., Wagner Y., Joppich C., Zahedi R., Meyer H.E., Schonfisch B., Perschil I., Chacinska A., Guiard B., Rehling P., Pfanner N., and Meisinger C. The proteome of Saccharomyces cerevisiae mitochondria. Proc. Natl. Acad. Sci. USA 100 (2003) 13207-13212
39. Kmita H., Antos N., Wojtkowska M., and Hryniewiecka L. Processes underlying the upregulation of Tom proteins in S. cerevisiae mitochondria depleted of the VDAC channel. J. Bioenerg. Biomembr. 36 (2004) 187-193
40. Tarassov I., Entelis N., and Martin R.P. An intact protein translocating machinery is required for mitochondrial import of a yeast cytoplasmic tRNA. J. Mol. Biol. 245 (1995) 315-323
41. Palmieri F. The mitochondrial transporter family (SLC25): physiological and pathological implications. Pflugers Arch. 447 (2004) 689-709
42. Palmieri F., Agrimi G., Blanco E., Castegna A., Di Noia M.A., Iacobazzi V., Lasorsa F.M., Marobbio C.M., Palmieri L., Scarcia P., Todisco S., Vozza A., and Walker J. Identification of mitochondrial carriers in Saccharomyces cerevisiae by transport assay of reconstituted recombinant proteins. Biochim. Biophys. Acta 1757 (2006) 1249-1262