Population structure of two closely related pelagic cichlids in Lake Victoria, Haplochromis pyrrhocephalus and H. laparogramma

Gene

Volumn 441, Issue 1-2, 2009, Pages 67-73

  Maeda, Kaoru ^a   Takeda, Miyuki ^a   Kamiya, Koichi ^a   Aibara, Mitsuto ^b   Mzighani, Semvua Isa ^b,d   Nishida, Mutsumi ^c   Mizoiri, Shinji ^b   Sato, Tetsu ^b   Terai, Yohey ^b   Okada, Norihiro ^b   Tachida, Hidenori ^a  

^a KYUSHU UNIVERSITY   (Japan)

^b TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d TANZANIA FISHERIES RESEARCH INSTITUTE   (Tanzania)

Author keywords

Microsatellite; Mitochondrial DNA; Population differentiation; Population expansion; Speciation

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; CICHLID; CONTROLLED STUDY; GENE LOCUS; GENETIC MARKER; GENETIC VARIABILITY; MICROSATELLITE MARKER; MOLECULAR BIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PELAGIC FISH; POPULATION GENETIC STRUCTURE; POPULATION SIZE; PRIORITY JOURNAL; SPECIES DIFFERENTIATION;

ANIMALS; CICHLIDS; DNA, MITOCHONDRIAL; ECOSYSTEM; FEMALE; GENETIC SPECIATION; GENETICS, POPULATION; LOCUS CONTROL REGION; MALE; MICROSATELLITE REPEATS; PHYLOGENY; ZIMBABWE;

CICHLIDAE; PISCES; YSSICHROMIS PYRRHOCEPHALUS;

EID: 67349166684     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2008.11.008     Document Type: Article

References (39)

1. Barel C.D.N., et al. Destruction of fisheries in African lakes. Nature 315 (1985) 19-20
2. Bootsma H.A., and Heckey R. Conservation of the African Great Lakes: a limnological perspective. Conserv. Biol. 7 (1993) 644-656
3. Duftner N., et al. Distinct population structure in a phenotypically homogeneous rock-dwelling cichlid fish from Lake Tanganyika. Mol. Ecol. 15 (2006) 2381-2395
4. Excoffier L., Smouse P.E., and Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplogroups: applications to human mitochondrial DNA restriction data. Genetics 131 (1992) 479-491
5. Excoffier L., Laval G., and Schneider S. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol. Bioinform. 1 (2005) 47-50 (Online)
6. Gavrilets S. Perspective: models of speciation: what have we learned in 40 years?. Evolution 57 (2003) 2197-2215
7. Goldschmidt T., and Witte F. Reproductive strategies of zooplanktivorous haplochromine cichlids (Pisces) from Lake Victoria before the Nile perch boom. Oikos 58 (1990) 356-368
8. Goldschmidt T., Witte F., and de Visser J. Ecological segregation in zooplanktivorous haplochromine species (Pisces: Cichlidae) from Lake Victoria. Oikos 58 (1990) 343-355
9. Greenwood P.H. The cichlid fishes of Lake Victoria, East Africa: the biology and evolution of a species flock. Bull. Br. Mus. Nat. Hist. Suppl. 6 (1974) 1-34
10. Hudson R.R., Slatkin M., and Maddison W.P. Estimation of levels of gene flow from DNA sequence data. Genetics 132 (1992) 583-589
11. Johnson T.C., Scholz C.A., Talbot M.R., Kelts K., and Ricketts R.D. Late Pleistocene desiccation of Lake Victoria and rapid evolution of cichlid fishes. Science 273 (1996) 1091-1093
12. Kocher T.D. Adaptive evolution and explosive speciation: the cichlid fish model. Nat. Rev., Genet. 5 (2004) 288-298
13. Kuhner M.K. LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 22 6 (2006) 768-770
14. Kuhner M.K., Yamato J., and Felsenstein J. Maximum likelihood estimation of population growth rates based on coalescent. Genetics 149 (1998) 429-434
15. Maeda K., Takeshima H., Mizoiri S., Okada N., Nishida M., and Tachida H. Isolation and characterization of microsatellite loci in the cichlid fish in Lake Victoria, Haplochromis chilotes. Mol. Ecol. Res. 8 (2008) 428-430
16. Nagl S., Tichy H., Mayer W.E., Takahata N., and Klein J. Persistence of neutral polymorphisms in Lake Victoria cichlid fish. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 14238-14243
17. Nagl S., Tichy H., Mayer W.E., Takezaki N., Takahata N., and Klein J. The origin and age of haplochromine fishes in Lake Victoria, East Africa. Proc. R. Soc. Lond. B. 267 (2000) 1049-1061
18. Nei M., and Li W.-H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A., 76 (1979) 5269-5373
19. Ohta T., and Kimura M. A model of mutation appropriate to estimate the number of elctrophoretically detectable alleles in a finite population. Genet. Res. 22 (1973) 201-204
20. Pereyra R., Taylor M.I., Turner G.F., and Rico C. Variation in habitat preference and population structure among three species of the Lake Malawi cichlid genus Protomelas. Mol. Ecol. 13 (2004) 2691-2697
21. Pritchard J.K., Stephens M., and Donnelly P. Inference of population structure using multilocus genotype data. Genetics 155 (2000) 945-959
22. Rico C., Bouteillon P., van Oppen M.J.H., Knight M.E., Hewitt G.M., and Turner G.F. No evidence for parallel sympatric speciation in cichlid species of the genus Pseudotropheus from north western Lake Malawi. J. Evol. Biol. 16 (2003) 37-46
23. Samonte I.E., Satta Y., Sato A., Tichy H., Takahata N., and Klein J. Gene flow between species of Lake Victoria haplochromine fishes. Mol. Biol. Evol. 24 9 (2007) 2069-2080
24. Schneider S., and Excoffier L. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152 (1999) 1079-1089
25. Seehausen O., Lippitsch E., Bouton N., and Zwennes H. Mbipi, the rock-dwelling cichlids of Lake Victoria: description of three new genera and fifteen new species (Teleostei). Ichthyol. Explor. Freshw. 9 (1998) 129-228
26. Shaw P.W., Turner G.F., Idid M.R., Robinson R.L., and Carvalho G.R. Genetic population structure indicates sympatric speciation of Lake Malawi pelagic cichlids. Proc. Biol. Sci. 267 (2000) 2273-2280
27. Slatkin M. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139 (1995) 457-462
28. Stager J.C., and Johnson T.C. The late Pleistocene desiccation of Lake Victoria and the origin of its endemic biota. Hydrobiologia 596 (2008) 5-16
29. Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123 (1989) 585-595
30. Terai Y., et al. Phylogenetic relationships among East African haplochromine fishes as revealed by short interspersed elements (SINEs). J. Mol. Evol. 58 (2004) 64-78
31. Terai Y., et al. Divergent selection on opsins drives incipient speciation in Lake Victoria cichlids. PLoS Biol. 4 (2006) e433
32. Turner G.F., Seehausen O., Knight M.E., Allender C.J., and Robinson R.L. How many species of cichlid fishes are there in African lakes?. Mol. Ecol. 10 (2001) 793-806
33. Verheyen E., Salzburger W., Snoeks J., and Meyer A. Origin of the superflock of cichlid fishes from Lake Victoria, East Africa. Science 300 (2003) 325-328
34. Watterson G.A. On the number of segregating sites in genetical model without recombination. Theor. Popul. Biol. 7 (1975) 256-276
35. Witte, F., Witte-Maas, E., 1987. Implications for taxonomy and functional morphology of intraspecific variation in haplochromine cichlids of Lake Victoria with descriptions of five zooplanktivorous species. In: Witte, F. (Ed.) From Form to Fishery: An Ecological and Taxonomical Contribution to Morphology and Fishery of Lake Victoria Cichlids. Ph.D. Thesis Rijksuniversiteit, Leiden.
36. Witte F., Barel K.D.N., and van Oijen M.J.P. Intraspecific variation of haplochromine cichlids from Lake Victoria and its taxonomic implications. S. Afr. J. Sci. 93 (1997) 585-594
37. Witte F., et al. Recovery of cichlid species in Lake Victoria: an examination of factors leading to differential extinction. Rev. Fish Biol. Fish. 10 (2000) 233-241
38. Won Y.-J., Sivasundar A., Wang Y., and Hey J. On the origin of Lake Malawi cichlid species: a population genetic analysis of divergence. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 6581-6586
39. Yue G.H., David L., and Orban L. Mutation rate and pattern of microsatellites in common carp (Cyprinus carpio L.). Genetica 129 (2007) 329-331