Self-organizing map approaches for the haplotype assembly problem

Mathematics and Computers in Simulation

Volumn 79, Issue 10, 2009, Pages 3026-3037

  Wu, Ling Yun ^a   Li, Zhenping ^b   Wang, Rui Sheng ^c   Zhang, Xiang Sun ^a   Chen, Luonan ^d  

^a CHINESE ACADEMY OF SCIENCES   (China)

^b BEIJING WUZI UNIVERSITY   (China)

^c RENMIN UNIVERSITY OF CHINA   (China)

^d OSAKA SANGYO UNIVERSITY   (Japan)

Author keywords

Haplotype assembly; Minimum error correction; Neural network; Self organizing map; SNP

Indexed keywords

ASSEMBLY PROBLEMS; COMPUTATIONAL EXPERIMENT; DNA FRAGMENT; HAPLOTYPE; HAPLOTYPE ASSEMBLY; HAPLOTYPES; INTEGER LINEAR PROGRAMMING MODELS; MINIMUM ERROR CORRECTION; NP-HARD; PARAMETER SETTING; REAL DATA SETS; RUNNING TIME; SNP;

ASSEMBLY; COMPUTATIONAL COMPLEXITY; CONFORMAL MAPPING; INTEGER PROGRAMMING; LINEARIZATION; NEURAL NETWORKS; NUCLEIC ACIDS; STRENGTH OF MATERIALS;

ERROR CORRECTION;

EID: 67349162631     PISSN: 03784754     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.matcom.2009.01.021     Document Type: Article

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