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Volumn 258, Issue 3, 2009, Pages 455-464

Mitochondrial energetic metabolism: A simplified model of TCA cycle with ATP production

Author keywords

ATP synthase; Dynamical system; Energetic metabolism; Existence of steady state; Mitochondria; Oxidative phosphorylation; Respiratory chain; TCA cycle

Indexed keywords

ADENOSINE TRIPHOSPHATE;

EID: 67349148332     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2008.09.037     Document Type: Article
Times cited : (57)

References (56)
  • 1
    • 0034059881 scopus 로고    scopus 로고
    • Calculating apparent équilibrium constants of enzyme-catalyzed reactions at pH 7
    • Alberty R. Calculating apparent équilibrium constants of enzyme-catalyzed reactions at pH 7. Biochem. Educ. 28 (2000) 12-17
    • (2000) Biochem. Educ. , vol.28 , pp. 12-17
    • Alberty, R.1
  • 2
    • 0032189439 scopus 로고    scopus 로고
    • Calculation of standard transformed formation properties of biochemical reactants and standard apparent reduction potentials of half reactions
    • Alberty R.A. Calculation of standard transformed formation properties of biochemical reactants and standard apparent reduction potentials of half reactions. Arch. Bioch. Biophys. 358 1 (1998) 25-39
    • (1998) Arch. Bioch. Biophys. , vol.358 , Issue.1 , pp. 25-39
    • Alberty, R.A.1
  • 4
    • 0031059812 scopus 로고    scopus 로고
    • Mitochondrial creatine kinase isoform expression does not correlate with its mode of action
    • Anflous K., Veksler V., Mateo P., Samson F., Saks V., and Ventura-Clapier R. Mitochondrial creatine kinase isoform expression does not correlate with its mode of action. Biochem. J. 322 (1997) 73-78
    • (1997) Biochem. J. , vol.322 , pp. 73-78
    • Anflous, K.1    Veksler, V.2    Mateo, P.3    Samson, F.4    Saks, V.5    Ventura-Clapier, R.6
  • 5
    • 0034923583 scopus 로고    scopus 로고
    • Intrahepatic amino acid and glucose metabolism in a d-galactosamine-induced rat liver failure model
    • Arai K., Lee K., Berthiaume F., and Tompkins R.G. Intrahepatic amino acid and glucose metabolism in a d-galactosamine-induced rat liver failure model. Hepatology 34 2 (2001) 360-361
    • (2001) Hepatology , vol.34 , Issue.2 , pp. 360-361
    • Arai, K.1    Lee, K.2    Berthiaume, F.3    Tompkins, R.G.4
  • 6
    • 0028966698 scopus 로고
    • Steady state content of glycolytic/tricarboxylic acid-cycle intermediates, adenine nucleotide pools and the cellular redox-status in the infective (L3) larvae of (homogonic) Strongyloides ratti
    • Armson A., and Mendis A.H. Steady state content of glycolytic/tricarboxylic acid-cycle intermediates, adenine nucleotide pools and the cellular redox-status in the infective (L3) larvae of (homogonic) Strongyloides ratti. Int. J. Parasitol. 25 2 (1995) 197-202
    • (1995) Int. J. Parasitol. , vol.25 , Issue.2 , pp. 197-202
    • Armson, A.1    Mendis, A.H.2
  • 7
    • 0011992723 scopus 로고
    • What should a theory of metabolic control offer to the experimenter?
    • Cornish-Bowden A., and Cardenas M.L. (Eds), Springer, Berlin
    • Atkinson D.E. What should a theory of metabolic control offer to the experimenter?. In: Cornish-Bowden A., and Cardenas M.L. (Eds). Control of Metabolic Processes (1990), Springer, Berlin 3-11
    • (1990) Control of Metabolic Processes , pp. 3-11
    • Atkinson, D.E.1
  • 8
    • 26844519465 scopus 로고    scopus 로고
    • Temporal changes of multiple redox couples from proliferation to growth arrest in IEC-6 intestinal epithelial cells
    • Attene-Ramos M.S., Kitiphongspattana K., Ishii-Schrade K., and Gaskins H.R. Temporal changes of multiple redox couples from proliferation to growth arrest in IEC-6 intestinal epithelial cells. Am. J. Physiol. Cell Physiol. 289 5 (2005) C1220-C1228
    • (2005) Am. J. Physiol. Cell Physiol. , vol.289 , Issue.5
    • Attene-Ramos, M.S.1    Kitiphongspattana, K.2    Ishii-Schrade, K.3    Gaskins, H.R.4
  • 9
    • 0042737759 scopus 로고    scopus 로고
    • Simultaneous determination of iron, copper and zinc concentrations in skin phantoms using XRF spectrometry
    • Bagshaw A.P., and Farquharson M.J. Simultaneous determination of iron, copper and zinc concentrations in skin phantoms using XRF spectrometry. X-Ray Spectrom. 31 1 (2002) 47-52
    • (2002) X-Ray Spectrom. , vol.31 , Issue.1 , pp. 47-52
    • Bagshaw, A.P.1    Farquharson, M.J.2
  • 10
    • 33846907051 scopus 로고    scopus 로고
    • A biophysical model of the mitochondrial respiratory system and oxidative phosphorylation
    • Beard D.A. A biophysical model of the mitochondrial respiratory system and oxidative phosphorylation. Plos Comput. Biol. 1 (2005) 252-264
    • (2005) Plos Comput. Biol. , vol.1 , pp. 252-264
    • Beard, D.A.1
  • 13
    • 0019879459 scopus 로고
    • Control of energy transformation of mitochondria. Analysis by a quantitative model
    • Bohnensack R. Control of energy transformation of mitochondria. Analysis by a quantitative model. Biochim. Biophys. Acta 634 (1981) 203-218
    • (1981) Biochim. Biophys. Acta , vol.634 , pp. 203-218
    • Bohnensack, R.1
  • 14
    • 0034012178 scopus 로고    scopus 로고
    • Activation of the calcium receptor by a calcimimetic compound halts the progression of secondary hyperparathyroidism in uremic rats
    • Chin J., Miller S.C., Wada M., Nagano N., Nemeth E.F., and Fox J. Activation of the calcium receptor by a calcimimetic compound halts the progression of secondary hyperparathyroidism in uremic rats. J. Am. Soc. Nephrol. 11 (2000) 903-911
    • (2000) J. Am. Soc. Nephrol. , vol.11 , pp. 903-911
    • Chin, J.1    Miller, S.C.2    Wada, M.3    Nagano, N.4    Nemeth, E.F.5    Fox, J.6
  • 15
    • 0037380954 scopus 로고    scopus 로고
    • An integrated model of cardiac mitochondrial energy metabolism and calcium dynamics
    • Cortassa S., Aon M.A., Marbán E., Winslow R.L., and O'Rourke B. An integrated model of cardiac mitochondrial energy metabolism and calcium dynamics. Biophys. J. 84 4 (2003) 2734-2755
    • (2003) Biophys. J. , vol.84 , Issue.4 , pp. 2734-2755
    • Cortassa, S.1    Aon, M.A.2    Marbán, E.3    Winslow, R.L.4    O'Rourke, B.5
  • 16
    • 0022340727 scopus 로고
    • The role of adenine nucleotide translocation in the energization of the inner membrane of mitochondria isolated from rho + and rho degree strains of Saccharomyces cerevisiae
    • Dupont C.H., Mazat J.P., and Guerin B. The role of adenine nucleotide translocation in the energization of the inner membrane of mitochondria isolated from rho + and rho degree strains of Saccharomyces cerevisiae. Biochem. Biophys. Res. Commun. 132 3 (1985) 1116-1123
    • (1985) Biochem. Biophys. Res. Commun. , vol.132 , Issue.3 , pp. 1116-1123
    • Dupont, C.H.1    Mazat, J.P.2    Guerin, B.3
  • 17
    • 0342985272 scopus 로고
    • Studies in cell permeability, the uptake of pyruvate by yeast
    • Foulkes E.C. Studies in cell permeability, the uptake of pyruvate by yeast. J. Gen. Physiol. 38 4 (1955) 425-430
    • (1955) J. Gen. Physiol. , vol.38 , Issue.4 , pp. 425-430
    • Foulkes, E.C.1
  • 18
    • 0015047607 scopus 로고
    • Simulation of the Krebs cycle and closely related metabolism in perfused rat liver. I. Construction of a model
    • Garfinkel D. Simulation of the Krebs cycle and closely related metabolism in perfused rat liver. I. Construction of a model. Comput. Biomed. Res. 4 1 (1971) 1-17
    • (1971) Comput. Biomed. Res. , vol.4 , Issue.1 , pp. 1-17
    • Garfinkel, D.1
  • 19
    • 0015045962 scopus 로고
    • Simulation of the Krebs cycle and closely related metabolism in perfused rat liver. II. Properties of the model
    • Garfinkel D. Simulation of the Krebs cycle and closely related metabolism in perfused rat liver. II. Properties of the model. Comput. Biomed. Res. 4 1 (1971) 18-42
    • (1971) Comput. Biomed. Res. , vol.4 , Issue.1 , pp. 18-42
    • Garfinkel, D.1
  • 21
    • 67349163180 scopus 로고    scopus 로고
    • EDP Sciences, Grenoble, p
    • Guérin, B., 2004. Bioénérgetique. EDP Sciences, Grenoble, p. 166.
    • (2004) Bioénérgetique , pp. 166
    • Guérin, B.1
  • 22
    • 0025292743 scopus 로고
    • Mechanisms by mitochondria transport calcium
    • Gunter T.E., and Pfeiffer D.R. Mechanisms by mitochondria transport calcium. Am. J. Physiol. 258 (1990) C755-C786
    • (1990) Am. J. Physiol. , vol.258
    • Gunter, T.E.1    Pfeiffer, D.R.2
  • 23
    • 0015856496 scopus 로고
    • The equilibrium constants of the adenosine triphosphate hydrolysis and the adenosine triphosphate-citrate lyase reactions
    • Guynn R.W., and Veech R.L. The equilibrium constants of the adenosine triphosphate hydrolysis and the adenosine triphosphate-citrate lyase reactions. J. Biol. Chem. 248 20 (1973) 6966-6972
    • (1973) J. Biol. Chem. , vol.248 , Issue.20 , pp. 6966-6972
    • Guynn, R.W.1    Veech, R.L.2
  • 25
    • 0019315377 scopus 로고
    • ′-triphosphate synthesis in mitochondria
    • ′-triphosphate synthesis in mitochondria. Biochemistry 19 18 (1980) 4213-4221
    • (1980) Biochemistry , vol.19 , Issue.18 , pp. 4213-4221
    • Holian, A.1    Wilson, D.F.2
  • 26
    • 3242678739 scopus 로고    scopus 로고
    • Effect of endurance training on muscle TCA cycle metabolism during exercise in humans
    • Howarth K.R., LeBlanc P.J., Heigenhauser G.J., and Gibala M.J. Effect of endurance training on muscle TCA cycle metabolism during exercise in humans. J. Appl. Physiol. 97 2 (2004) 579-584
    • (2004) J. Appl. Physiol. , vol.97 , Issue.2 , pp. 579-584
    • Howarth, K.R.1    LeBlanc, P.J.2    Heigenhauser, G.J.3    Gibala, M.J.4
  • 27
    • 0024570046 scopus 로고
    • Polarographic observation of substrate-level phosphorylation and its stimulation by acetylcholine
    • Kondracheva M.N., and Doliba N.M. Polarographic observation of substrate-level phosphorylation and its stimulation by acetylcholine. FEBS Lett. 243 (1989) 153-155
    • (1989) FEBS Lett. , vol.243 , pp. 153-155
    • Kondracheva, M.N.1    Doliba, N.M.2
  • 28
    • 0025995674 scopus 로고
    • An extended dynamic model of oxidative phosphorylation
    • Korzeniewski B. An extended dynamic model of oxidative phosphorylation. Biochim. Biophys. Acta 1060 2 (1991) 210-223
    • (1991) Biochim. Biophys. Acta , vol.1060 , Issue.2 , pp. 210-223
    • Korzeniewski, B.1
  • 29
    • 0035425348 scopus 로고    scopus 로고
    • Effect of 'binary mitochondrial heteroplasmy' on respiration and ATP synthesis: implications for mitochondrial diseases
    • Korzeniewski B., Malgat M., Letellier T., and Mazat J.P. Effect of 'binary mitochondrial heteroplasmy' on respiration and ATP synthesis: implications for mitochondrial diseases. Biochem. J. 357 (2001) 835-842
    • (2001) Biochem. J. , vol.357 , pp. 835-842
    • Korzeniewski, B.1    Malgat, M.2    Letellier, T.3    Mazat, J.P.4
  • 30
    • 0028860219 scopus 로고
    • Assay of blood and tissue oxaloacetate and α-ketogluterate by isotope dilution gas chromatography-mass spectrometry
    • Laplante A., Compte B., and Des Rosiers C. Assay of blood and tissue oxaloacetate and α-ketogluterate by isotope dilution gas chromatography-mass spectrometry. Anal. Biochem. 224 2 (1995) 580-587
    • (1995) Anal. Biochem. , vol.224 , Issue.2 , pp. 580-587
    • Laplante, A.1    Compte, B.2    Des Rosiers, C.3
  • 31
    • 67349204999 scopus 로고    scopus 로고
    • Lehninger Biochemistry, second edition. Worth Publisher, New York, 1977.
    • Lehninger Biochemistry, second edition. Worth Publisher, New York, 1977.
  • 36
    • 0021212051 scopus 로고
    • Enhanced rate of citrate export from cholesterol-rich hepatoma mitochondria
    • Parlo R.A., and Coleman P.S. Enhanced rate of citrate export from cholesterol-rich hepatoma mitochondria. J. Biol. Chem. 259 (1984) 9997-10003
    • (1984) J. Biol. Chem. , vol.259 , pp. 9997-10003
    • Parlo, R.A.1    Coleman, P.S.2
  • 39
    • 0018941733 scopus 로고
    • Relation between the content of acetyl-coenzyme A and acetylchloline in brane slices
    • Ricny J., and Tucek S. Relation between the content of acetyl-coenzyme A and acetylchloline in brane slices. Biochem. J. 188 3 (1980) 683-688
    • (1980) Biochem. J. , vol.188 , Issue.3 , pp. 683-688
    • Ricny, J.1    Tucek, S.2
  • 40
    • 0033519586 scopus 로고    scopus 로고
    • Neurturin enhances the survival of intrastriatal fetal dopaminergic transplants
    • Rosenblad C., Kirik D., and Björklund A. Neurturin enhances the survival of intrastriatal fetal dopaminergic transplants. NeuroReport 10 8 (1999) 1783-1887
    • (1999) NeuroReport , vol.10 , Issue.8 , pp. 1783-1887
    • Rosenblad, C.1    Kirik, D.2    Björklund, A.3
  • 41
    • 0032127921 scopus 로고    scopus 로고
    • K + channel block-induced mammalian neuroblastoma cell swelling: a possible mechanism to influence profliferation
    • Rouzaire-Dubois B., and Dubois J.M. K + channel block-induced mammalian neuroblastoma cell swelling: a possible mechanism to influence profliferation. J. Physiol. 510 (1998) 93-102
    • (1998) J. Physiol. , vol.510 , pp. 93-102
    • Rouzaire-Dubois, B.1    Dubois, J.M.2
  • 44
    • 0031277390 scopus 로고    scopus 로고
    • Rapid aldosterone-induced cell volume increase of endothelial cells measured by the atomic force microscope
    • Schneider S.W., Yano Y., Sumpio B.E., Jena B.P., Geibel J.P., Gekle M., and Oberleithner H. Rapid aldosterone-induced cell volume increase of endothelial cells measured by the atomic force microscope. Cell Biol. Int. 21 11 (1997) 759-768
    • (1997) Cell Biol. Int. , vol.21 , Issue.11 , pp. 759-768
    • Schneider, S.W.1    Yano, Y.2    Sumpio, B.E.3    Jena, B.P.4    Geibel, J.P.5    Gekle, M.6    Oberleithner, H.7
  • 46
    • 0003255165 scopus 로고
    • Academic Press, London 123-146 and 235-257
    • Sies H. Metabolic Compartimentation (1982), Academic Press, London 123-146 and 235-257
    • (1982) Metabolic Compartimentation
    • Sies, H.1
  • 49
    • 0242628319 scopus 로고    scopus 로고
    • NMR-based metabolomics: a powerful approach for characterizing the effects of environmental stressors on organism health
    • Viant M.R., Rosenblum E.S., and Tieerdema R.S. NMR-based metabolomics: a powerful approach for characterizing the effects of environmental stressors on organism health. Environ. Sci. Technol. 37 21 (2003) 4982-4989
    • (2003) Environ. Sci. Technol. , vol.37 , Issue.21 , pp. 4982-4989
    • Viant, M.R.1    Rosenblum, E.S.2    Tieerdema, R.S.3
  • 50
    • 0017691722 scopus 로고
    • Control of mitochondrial respiration: a quantitative evaluation of the roles of cytochrome c and oxygen
    • Wilson D.F., Owen C.S., and Holian A. Control of mitochondrial respiration: a quantitative evaluation of the roles of cytochrome c and oxygen. Arch. Biochem. Biophys. 182 2 (1977) 749-762
    • (1977) Arch. Biochem. Biophys. , vol.182 , Issue.2 , pp. 749-762
    • Wilson, D.F.1    Owen, C.S.2    Holian, A.3
  • 51
    • 0022519377 scopus 로고
    • Energy-storage capacity of the mitochondrial proton-motive force
    • Wojtczak L., Zolkiewska A., and Duszynski J. Energy-storage capacity of the mitochondrial proton-motive force. Biochim. Biophys. Acta 851 2 (1986) 313-321
    • (1986) Biochim. Biophys. Acta , vol.851 , Issue.2 , pp. 313-321
    • Wojtczak, L.1    Zolkiewska, A.2    Duszynski, J.3
  • 52
    • 0026662512 scopus 로고
    • Systems analysis of the tricarboxylic acid cycle in Dictyostelium discoideum. I. The basis for model construction
    • Wright B.E., Butler M.H., and Albe K.R. Systems analysis of the tricarboxylic acid cycle in Dictyostelium discoideum. I. The basis for model construction. J. Biol. Chem. 267 5 (1992) 3101-3105
    • (1992) J. Biol. Chem. , vol.267 , Issue.5 , pp. 3101-3105
    • Wright, B.E.1    Butler, M.H.2    Albe, K.R.3
  • 53
    • 34548297895 scopus 로고    scopus 로고
    • Computer modelling of mitochondrial tricarboxylic cycle, oxidative phosphorylation, metabolite transport, and electrophysiology
    • Wu F., Yang F., Vinnakota K.C., and Beard D.A. Computer modelling of mitochondrial tricarboxylic cycle, oxidative phosphorylation, metabolite transport, and electrophysiology. J. Biol. Chem. 282 34 (2007) 24525-24537
    • (2007) J. Biol. Chem. , vol.282 , Issue.34 , pp. 24525-24537
    • Wu, F.1    Yang, F.2    Vinnakota, K.C.3    Beard, D.A.4
  • 54
    • 0019876664 scopus 로고
    • Coenzyme A activation of acetyl-CoA carboxylase
    • Yeh L.A., Song C.S., and Kim K.H. Coenzyme A activation of acetyl-CoA carboxylase. J. Biol. Chem. 256 5 (1981) 2289-2296
    • (1981) J. Biol. Chem. , vol.256 , Issue.5 , pp. 2289-2296
    • Yeh, L.A.1    Song, C.S.2    Kim, K.H.3
  • 55
    • 0033886378 scopus 로고    scopus 로고
    • Stretch-dependent modulation of contractility and growth in smooth muscle of rat portal vein
    • Zeidan A., Nordström I., Dreja K., Malmqvist U., and Hellstrand P. Stretch-dependent modulation of contractility and growth in smooth muscle of rat portal vein. Circ. Res. 87 3 (2000) 228-234
    • (2000) Circ. Res. , vol.87 , Issue.3 , pp. 228-234
    • Zeidan, A.1    Nordström, I.2    Dreja, K.3    Malmqvist, U.4    Hellstrand, P.5
  • 56
    • 0028790261 scopus 로고
    • Intracellular flux analysis applied to the effect of dissolved oxygen on hybridomas
    • Zupke C., Sinskey A.J., and Stephanopoulos G. Intracellular flux analysis applied to the effect of dissolved oxygen on hybridomas. Appl. Microbiol. Biotechnol. 44 1-2 (1995) 27-36
    • (1995) Appl. Microbiol. Biotechnol. , vol.44 , Issue.1-2 , pp. 27-36
    • Zupke, C.1    Sinskey, A.J.2    Stephanopoulos, G.3


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