-
1
-
-
10044274340
-
Influence of RNA secondary structure on the pre-mRNA splicing process
-
Buratti E, Baralle FE: Influence of RNA secondary structure on the pre-mRNA splicing process. Mol Cell Biol 2004; 24: 10505-10514.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 10505-10514
-
-
Buratti, E.1
Baralle, F.E.2
-
3
-
-
0032128255
-
Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins
-
Liu HX, Zhang M, Krainer AR: Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev 1998; 12: 1998-2012.
-
(1998)
Genes Dev
, vol.12
, pp. 1998-2012
-
-
Liu, H.X.1
Zhang, M.2
Krainer, A.R.3
-
4
-
-
0033552901
-
SR proteins are 'locators' of the RNA splicing machinery
-
Graveley BR, Hertel KJ, Maniatis T: SR proteins are 'locators' of the RNA splicing machinery. Curr Biol 1999; 9: R6-R7.
-
(1999)
Curr Biol
, vol.9
-
-
Graveley, B.R.1
Hertel, K.J.2
Maniatis, T.3
-
5
-
-
0026660025
-
HnRNP I, the polypyrimidine tract-binding protein: Distinct nuclear localization and association with hnRNAs
-
Ghetti A, Pinol-Roma S, Michael WM, Morandi C, Dreyfuss G: HnRNP I, the polypyrimidine tract-binding protein: Distinct nuclear localization and association with hnRNAs. Nucleic Acids Res 1992; 20: 3671-3678.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 3671-3678
-
-
Ghetti, A.1
Pinol-Roma, S.2
Michael, W.M.3
Morandi, C.4
Dreyfuss, G.5
-
6
-
-
0028356054
-
The hnRNP F protein: Unique primary structure, nucleic acid-binding properties, and subcellular localization
-
Matunis MJ, XinU J, Dreyfuss G: The hnRNP F protein: unique primary structure, nucleic acid-binding properties, and subcellular localization. Nucleic Acids Res 1994; 22: 1059-1067.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 1059-1067
-
-
Matunis, M.J.1
XinU, J.2
Dreyfuss, G.3
-
7
-
-
0028215301
-
RNA bindinS specificity of hnRNP A1: Significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing
-
Burd CG, Dreyfuss G: RNA bindinS specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J 1994; 13: 1197-1204.
-
(1994)
EMBO J
, vol.13
, pp. 1197-1204
-
-
Burd, C.G.1
Dreyfuss, G.2
-
8
-
-
0035941211
-
Determination of the RNA binding specificity of the heterogeneous nuclear ribonucleoprotein (hnRNP) H/H'/F/2H9 family
-
Caputi M, Zahler AM: Determination of the RNA binding specificity of the heterogeneous nuclear ribonucleoprotein (hnRNP) H/H'/F/2H9 family. J Biol Chem 2001; 276: 43850-43859.
-
(2001)
J Biol Chem
, vol.276
, pp. 43850-43859
-
-
Caputi, M.1
Zahler, A.M.2
-
9
-
-
0033019048
-
Selection and characterization of pre-mRNA splicing enhancers: Identification of novel SR protein-specific enhancer sequences
-
Schaal TD, Maniatis T: Selection and characterization of pre-mRNA splicing enhancers: Identification of novel SR protein-specific enhancer sequences. Mol Cell Biol 1999; 19: 1705-1719.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1705-1719
-
-
Schaal, T.D.1
Maniatis, T.2
-
10
-
-
3342938228
-
In vivo selection reveals combinatorial controls that define a critical exon in the spinal muscular atrophy genes
-
Singh NN, Androphy EJ, Singh RN: In vivo selection reveals combinatorial controls that define a critical exon in the spinal muscular atrophy genes. RNA 2004; 10: 1291-1305.
-
(2004)
RNA
, vol.10
, pp. 1291-1305
-
-
Singh, N.N.1
Androphy, E.J.2
Singh, R.N.3
-
11
-
-
0037047644
-
Predictive identification of exonic splicing enhancers in human genes
-
Fairbrother WG, Yeh RF, Sharp PA, Burge CB: Predictive identification of exonic splicing enhancers in human genes. Science 2002; 297: 1007-1013.
-
(2002)
Science
, vol.297
, pp. 1007-1013
-
-
Fairbrother, W.G.1
Yeh, R.F.2
Sharp, P.A.3
Burge, C.B.4
-
12
-
-
2642525438
-
Computational definition of sequence motifs governing constitutive exon splicing
-
Zhang XH, Chasin LA: Computational definition of sequence motifs governing constitutive exon splicing. Genes Dev 2004; 18: 1241-1250.
-
(2004)
Genes Dev
, vol.18
, pp. 1241-1250
-
-
Zhang, X.H.1
Chasin, L.A.2
-
13
-
-
10944256767
-
Systematic identification and analysis of exonic splicing silencers
-
Wang Z, Rolish ME, Yeo G, Tung V, Mawson M, Burge CB: Systematic identification and analysis of exonic splicing silencers. Cell 2004; 119: 831-845.
-
(2004)
Cell
, vol.119
, pp. 831-845
-
-
Wang, Z.1
Rolish, M.E.2
Yeo, G.3
Tung, V.4
Mawson, M.5
Burge, C.B.6
-
14
-
-
23344437521
-
Exon inclusion is dependent on predictable exonic splicing enhancers
-
Zhang XH, Kangsamaksin T, Chao MS, Banerjee JK, Chasin LA: Exon inclusion is dependent on predictable exonic splicing enhancers. Mol Cell Biol 2005; 25: 7323-7332.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 7323-7332
-
-
Zhang, X.H.1
Kangsamaksin, T.2
Chao, M.S.3
Banerjee, J.K.4
Chasin, L.A.5
-
15
-
-
33745207758
-
Comparative analysis identifies exonic splicing regulatory sequences-the complex definition of enhancers and silencers
-
Goren A, Ram O, Amit M et al: Comparative analysis identifies exonic splicing regulatory sequences-the complex definition of enhancers and silencers. Mol Cell 2006; 22: 769-781.
-
(2006)
Mol Cell
, vol.22
, pp. 769-781
-
-
Goren, A.1
Ram, O.2
Amit, M.3
-
16
-
-
34248338233
-
Extensive in silico analysis of NF1 splicing defects uncovers determinants for splicing outcome upon 5′ splice-site disruption
-
Wimmer K, Roca X, Beiglbock H et al: Extensive in silico analysis of NF1 splicing defects uncovers determinants for splicing outcome upon 5′ splice-site disruption. Hum Mutat 2007; 28 599-612.
-
(2007)
Hum Mutat
, vol.28
, pp. 599-612
-
-
Wimmer, K.1
Roca, X.2
Beiglbock, H.3
-
17
-
-
36248977122
-
Global control of aberrant splice site activation by auxiliary splicing sequences: Evidence for a gradient in exon and intron definition
-
Kralovicova J, Vorechovsky I: Global control of aberrant splice site activation by auxiliary splicing sequences: Evidence for a gradient in exon and intron definition. Nucleic Acids Res 2007; 35: 6399-6413.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6399-6413
-
-
Kralovicova, J.1
Vorechovsky, I.2
-
18
-
-
33745501015
-
General and specific functions of exonic splicing silencers in splicing control
-
Wang Z, Xiao X, Van Nostrand E, Burge CB: General and specific functions of exonic splicing silencers in splicing control. Mol Cell 2006; 23: 61-70.
-
(2006)
Mol Cell
, vol.23
, pp. 61-70
-
-
Wang, Z.1
Xiao, X.2
Van Nostrand, E.3
Burge, C.B.4
-
19
-
-
0033966774
-
Mutations affecting mRNA splicing are the most common molecular defects in patients with neurofibromatosis type 1
-
Ars E, Serra E, Garcia J et al: Mutations affecting mRNA splicing are the most common molecular defects in patients with neurofibromatosis type 1. Hum Mol Genet 2000; 9: 237-247.
-
(2000)
Hum Mol Genet
, vol.9
, pp. 237-247
-
-
Ars, E.1
Serra, E.2
Garcia, J.3
-
20
-
-
0039108539
-
Splicing defects in the ataxia-telangiectasia gene, ATM: Underlying mutations and consequences
-
Teraoka SN, Telatar M, Becker-Catania S et al: Splicing defects in the ataxia-telangiectasia gene, ATM: Underlying mutations and consequences. Am J Hum Genet 1999; 64: 1617-1631.
-
(1999)
Am J Hum Genet
, vol.64
, pp. 1617-1631
-
-
Teraoka, S.N.1
Telatar, M.2
Becker-Catania, S.3
-
22
-
-
0023651307
-
RNA splice junctions of different classes of eukaryotes: Sequence statistics and functional implications in gene expression
-
Shapiro MB, Senapathy P: RNA splice junctions of different classes of eukaryotes: Sequence statistics and functional implications in gene expression. Nucleic Acids Res 1987; 15: 7155-7174.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 7155-7174
-
-
Shapiro, M.B.1
Senapathy, P.2
-
23
-
-
33750142512
-
Aberrant 3′ splice sites in human disease genes: Mutation pattern, nucleotide structure and comparison of computational tools that predict their utilization
-
Vorechovsky I: Aberrant 3′ splice sites in human disease genes: mutation pattern, nucleotide structure and comparison of computational tools that predict their utilization. Nucleic Acids Res 2006; 34: 4630-4641.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4630-4641
-
-
Vorechovsky, I.1
-
24
-
-
34547850647
-
Aberrant 5′ splice sites in human disease genes: Mutation pattern, nucletide structure and comparison of computational tools that predict their utilization
-
Buratti E, Chivers MC, Kralovicova J et al: Aberrant 5′ splice sites in human disease genes: Mutation pattern, nucletide structure and comparison of computational tools that predict their utilization. Nucleic Acids Res 2007; 35: 4250-4263.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 4250-4263
-
-
Buratti, E.1
Chivers, M.C.2
Kralovicova, J.3
-
26
-
-
33747891736
-
An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers
-
Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR: An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet 2006; 15: 2490-2508.
-
(2006)
Hum Mol Genet
, vol.15
, pp. 2490-2508
-
-
Smith, P.J.1
Zhang, C.2
Wang, J.3
Chew, S.L.4
Zhang, M.Q.5
Krainer, A.R.6
-
27
-
-
0042242582
-
ESEfinder: A web resource to identify exonic splicing enhancers
-
CarteAni L, Wang J, Zhu Z, Zhang MQ, Krainer AR: ESEfinder: a web resource to identify exonic splicing enhancers. Nucleic Acids Res 2003; 31: 3568-3571.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3568-3571
-
-
CarteAni, L.1
Wang, J.2
Zhu, Z.3
Zhang, M.Q.4
Krainer, A.R.5
-
28
-
-
44449115151
-
RNA landscape of evolution for optimal exon and intron discrimination
-
Zhang C, Li WH, Krainer AR, Zhang MQ: RNA landscape of evolution for optimal exon and intron discrimination. Proc Natl Acad Sci USA 2008; 105: 5797-5802.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 5797-5802
-
-
Zhang, C.1
Li, W.H.2
Krainer, A.R.3
Zhang, M.Q.4
-
29
-
-
33751361304
-
Inference of splicing regulatory activities by sequence neighborhood analysis
-
Stadler MB, Shomron N, Yeo GW, Schneider A, Xiao X, Burge CB: Inference of splicing regulatory activities by sequence neighborhood analysis. PLoS Genet 2006; 2: E191.
-
(2006)
PLoS Genet
, vol.2
-
-
Stadler, M.B.1
Shomron, N.2
Yeo, G.W.3
Schneider, A.4
Xiao, X.5
Burge, C.B.6
-
30
-
-
1842607847
-
-
Team RDC:, Vienna, Austria: R Foundation for Statistical Computing: ISBN 3-900051-07-0 2007
-
Team RDC: R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing: ISBN 3-900051-07-0 2007.
-
R: A Language and Environment for Statistical Computing
-
-
-
31
-
-
46749098393
-
Evaluation of in silico splice tools for decision-making in molecular diagnosis
-
Houdayer C, Dehainault C, Mattler C et al: Evaluation of in silico splice tools for decision-making in molecular diagnosis. Hum Mutat 2008; 29: 975-982.
-
(2008)
Hum Mutat
, vol.29
, pp. 975-982
-
-
Houdayer, C.1
Dehainault, C.2
Mattler, C.3
-
32
-
-
1942469356
-
Comparative analysis detects dependencies among the 5′ splice-site positions
-
Carmel I, Tal S, Vig I, Ast G: Comparative analysis detects dependencies among the 5′ splice-site positions. RNA 2004; 10: 828-840.
-
(2004)
RNA
, vol.10
, pp. 828-840
-
-
Carmel, I.1
Tal, S.2
Vig, I.3
Ast, G.4
-
33
-
-
10944245056
-
Alternative splicing of conserved exons is frequently species-specific in human and mouse
-
Pan Q, Bakowski MA, Morris Q et al: Alternative splicing of conserved exons is frequently species-specific in human and mouse. Trends Genet 2005; 21: 73-77.
-
(2005)
Trends Genet
, vol.21
, pp. 73-77
-
-
Pan, Q.1
Bakowski, M.A.2
Morris, Q.3
-
34
-
-
66749167094
-
Disease-causing mutations improving the branch site and polypyrimidine tract: Pseudoexon activation of LINE-2 and antisense Alu lacking the poly(T)-tail
-
in press
-
Meili D, Kralovicova J, Zagalak J et al: Disease-causing mutations improving the branch site and polypyrimidine tract: Pseudoexon activation of LINE-2 and antisense Alu lacking the poly(T)-tail. Hum Mutat 2009; (in press).
-
(2009)
Hum Mutat
-
-
Meili, D.1
Kralovicova, J.2
Zagalak, J.3
-
35
-
-
0024808994
-
The organization of 3′ splice-site sequences in mammalian introns
-
Reed R: The organization of 3′ splice-site sequences in mammalian introns. Genes Dev 1989; 3: 2113-2123.
-
(1989)
Genes Dev
, vol.3
, pp. 2113-2123
-
-
Reed, R.1
-
36
-
-
0030743391
-
G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection
-
McCullough AJ, Berget SM: G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection. Mol Cell Biol 1997; 17: 4562-4571.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 4562-4571
-
-
McCullough, A.J.1
Berget, S.M.2
-
37
-
-
21844480060
-
A combinatorial code for splicing silencing: UAGG and GGGG motifs
-
Han K, Yeo G, An P, Burge CB, Grabowski PJ: A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol 2005; 3: e158.
-
(2005)
PLoS Biol
, vol.3
-
-
Han, K.1
Yeo, G.2
An, P.3
Burge, C.B.4
Grabowski, P.J.5
-
38
-
-
32044475140
-
Position-dependent repression and promotion of DQB1 intron 3 splicing by GGGG motifs
-
Kralovicova J, Vorechovsky I: Position-dependent repression and promotion of DQB1 intron 3 splicing by GGGG motifs. J Immunol 2006; 176: 2381-2388.
-
(2006)
J Immunol
, vol.176
, pp. 2381-2388
-
-
Kralovicova, J.1
Vorechovsky, I.2
|