Automated Raman Spectral Preprocessing of Bone and OtherMusculoskeletal Tissues

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 7166, Issue , 2009, Pages

  Esmonde White, Francis W L ^a   Schulmerich, Matthew V ^a,b   Esmonde White, Karen A ^a   Morris, Michael D ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Background correction; Bone; Dichroic filter spectra; Fluorescence removal; Image rotation; Musculoskeletal tissue; Preprocessing; Raman Spectroscopy; Spike removal

Indexed keywords

BACKGROUND CORRECTION; DICHROIC FILTER SPECTRA; IMAGE ROTATION; MUSCULOSKELETAL TISSUE; PREPROCESSING; SPIKE REMOVAL;

CALIBRATION; FLUORESCENCE; HISTOLOGY; LIGHT; LIGHT POLARIZATION; RAMAN SCATTERING; RAMAN SPECTROSCOPY; ROTATION; SPECTRUM ANALYSIS;

BONE;

EID: 67249120946     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.809436     Document Type: Conference Paper

References (29)

1. Carden, A., and Morris, M. D., "Application of vibrational spectroscopy to the study of mineralized tissues (review)", J. Biomed. Opt. 5(3), 259-268 (2000).
2. Edwards, H. G. M, and Carter, E. A., [Biological applications of Raman spectroscopy], Marcel Dekker Inc., NewYork (2001).
3. Manoharan, R., Wang, Y., and Feld, M. S., "Histochemical analysis of biological tissues using Ramanspectroscopy", Spectrochim. Acta, Part A 52(2), 215-249 (1996).
4. Puppels, G. J., "In vivo Raman spectroscopy", in [Handbook of Raman spectroscopy: From the research laboratoryto the process line], Lewis, I.R., and Edwards, H.G.M., Marcel Dekker, (2001).
5. Timlin, J. A., Carden, A., and Morris, M. D., "Chemical microstructure of cortical bone probed by Ramantransects", Appl. Spectrosc. 53(11), 1429-1435 (1999).
6. Timlin, J. A., Carden, A., Morris, M. D., Rajachar, R. M., and Kohn, D., "Raman spectroscopic imaging markers forfatigue-related microdamage in bovine bone", Anal. Chem. 72, 2229-2236 (2000).
7. Tarnowski, C. P., Ignelzi, M. A., and Morris, M. D., "Mineralization of developing mouse calvaria as revealed byRaman microspectroscopy", J. Bone Miner. Res. 17(6), 1118-1126 (2002).
8. Morris, M. D., Matousek, P., Towrie, M., Parker, A. W., Goodship, A. E., and Draper, E. R. C., "Kerr-gated time-resolved Raman spectroscopy of equine cortical bone tissue", J. Biomed. Opt. 10(1), 014014-014017 (2005).
9. Crane, N. J., Popescu, V., Morris, M. D., Steenhuis, P., and Ignelzi, J. M. A., "Raman spectroscopic evidence foroctacalcium phosphate and other transient mineral species deposited during intramembranous mineralization", Bone39(3), 434-442 (2006).
10. Dehring, K. A., Crane, N. J., Smukler, A. R., McHugh, J. B., Roessler, B. J., and Morris, M. D., "Identifyingchemical changes in subchondral bone taken from murine knee joints using Raman spectroscopy", Appl. Spectrosc. 60(10), 1134-1141 (2006).
11. Widjaja, E., Li, C., Chew, W., and Garland, M., "Band-target entropy minimization. A robust algorithm for pure component spectral recovery. Application to complex randomized mixtures of six components", Anal. Chem. 75, 4499-4507 (2003).
12. Hu-Wei Tan, S. D. B., "Wavelet analysis applied to removing non-constant, varying spectroscopic background inmultivariate calibration", J. Chemom. 16(5), 228-240 (2002).
13. Wartewig, S., [IR and Raman spectroscopy: Fundamental processing], Wiley-VCH, Weinheim (2003).
14. Gornushkin, I. B., Eagan, P. E., Novikov, A. B., Smith, B. W., and Winefordner, J. D., "Automatic correction ofcontinuum background in laser-induced breakdown and Raman spectrometry", Appl. Spectrosc. 57(2), 197-207 (2003).
15. Jarvis, R. M., and Goodacre, R., "Genetic algorithm optimization for pre-processing and variable selection ofspectroscopic data", Bioinformatics 21(7), 860-868 (2005).
16. Lieber, C. A., and Mahadevan-Jansen, A., "Automated method for subtraction of fluorescence from biologicalRaman spectra", Appl. Spectrosc. 57(11), 1363-1367 (2003).
17. Motz, J. T., Gandhi, S. J., Scepanovic, O. R., Haka, A. S., Kramer, J. R., Dasari, R. R., and Feld, M. S., "Real-timeRaman system for in vivo disease diagnosis", J. Biomed. Opt. 10(3), 031113-031117 (2005).
18. Matousek, P., Clark, I. P., Draper, E. R. C., Morris, M. D., Goodship, A. E., Everall, N., Towrie, M., Finney, W. F., and Parker, A. W., "Subsurface probing in diffusely scattering media using spatially offset Raman spectroscopy", Appl. Spectrosc. 59(4), 393-400 (2005).
19. Matousek, P., Towrie, M., Stanley, A., and Parker, A. W., "Efficient rejection of fluorescence from Raman spectrausing picosecond kerr gating", Appl. Spectrosc. 53(12), 1485-1489 (1999).
20. Banerjee, S., and Li, D., "Interpreting multicomponent infrared spectra by derivative minimization", Appl. Spectrosc. 45(6), 1047-1049 (1991).
21. Shen, C., Vickers, T. J., and Mann, C. K., "Abscissa error detection and correction in Raman spectroscopy", Appl. Spectrosc. 46(5), 772-777 (1992).
22. McColgin, W. C., Tivarus, C., Swanson, C. C., and Filo, A. J., "Bright-pixel defects in irradiated CCD imagesensors." Mater. Res. Soc. Proc. Vol. 994, 0994-F0912-0906 (2007).
23. Takeuchi, H., Hashimoto, S., and Harada, I., "Simple and efficient method to eliminate spike noise from spectrarecorded on charge-coupled device detectors", Appl. Spectrosc. 47(1), 129-131 (1993).
24. Windhorst, R. A., Franklin, B. E., and Neuschaefer, L. W., "Removing cosmic-ray hits from multiorbit HST widefield camera images", Publ. Astron. Soc. Pac. 106(701), 798-806 (1994).
25. van Dokkum, Pieter G., "Cosmic-ray rejection by Laplacian edge detection", Publ. Astron. Soc. Pac. 113(789), 1420-1427 (2001).
26. Fruchter, A. S., and Hook, R. N., "Drizzle: A method for the linear reconstruction of undersampled images", Publ. Astron. Soc. Pac. 114(792), 144-152 (2002).
27. Zhang, D., and Ben-Amotz, D., "Removal of cosmic spikes from hyper-spectral images using a hybrid upper-boundspectrum method", Appl. Spectrosc. 56(1), 91-98 (2002).
28. Zhao, J., "Image curvature correction and cosmic removal for high-throughput dispersive Raman spectroscopy", Appl. Spectrosc. 57(11), 1368-1375 (2003).
29. Zhu, Z., and Ye, Z., "Detection of cosmic-ray hits for single spectroscopic CCD images", Publ. Astron. Soc. Pac. 120(869), 814-820 (2008).