Towards reliable autofocusing in automated microscopy

ICINCO 2007 - 4th International Conference on Informatics in Control, Automation and Robotics, Proceedings

Volumn ICSO, Issue , 2007, Pages 440-447

  Brázdilová, Silvie Luisa ^a  

^a MASARYK UNIVERSITY   (Czech Republic)

Author keywords

Fluorescence microscopy; Focus function; Genetic programming

Indexed keywords

AUTO-FOCUSING; AUTOMATED MICROSCOPY; FOCUS FUNCTION; WHOLE PROCESS;

FLUORESCENCE; FLUORESCENCE MICROSCOPY; ROBOTICS;

GENETIC PROGRAMMING;

EID: 67149136280     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (15)

1. Boddeke, F. R. (1999). Quantitative Fluorescence Microscopy. PhD thesis, Technische Universiteit Delft.
2. Boddeke, F. R., van Vliet, L. J., Netten, H., and Young, I. T. (1994). Autofocusing in microscopy based on the otf and sampling. Bioimaging, 2:193-203.
3. Bueno-Ibarra, M. A., Álvarez Borrego, J., Acho, L., and Chávez-Sánchez, M. C. (2005). Fast autofocus algorithm for automated microscopes. Optical Engineering, 44.
4. Firestone, L., Cook, K., Culp, K., Talsania, N., and Preston, K. (1991). Comparison of autofocus methods for automated microscopy. Cytometry, 12:195-206.
5. Geusebroek,J.,Cornelissen,E,Smeulders,A.,andGeerts,H.(2000). Robustautofocusinginmicroscopy.Cytometry,39:1-9.(Pubitemid30043224)
6. Groen, F. C., Young, I. T., and Ligthart, G. (1985). A comparison of different focus functions for use in autofocus algorithms. Cytometry, 6:81-91.
7. Koza, J. R. (1992). Genetic Programming: On the Programming of Computers by Means of Natural Selection. MIT Press.
8. Kozubek, M., Kozubek, S., Lukášová, E., Marečková, A., Bártová, E., Skalníková , M., and Jergová, A. (1999). High-resolution cytometry of fish dots in interphase cell nuclei. Cytometry, 36:279-293. (Pubitemid 29344463)
9. Mitchell, M. (1996). An Introduction to Genetic Algorithms. Massachusetts Institute of Technology.
10. Montana, D. J. (1995). Strongly typed genetic programming. Evolutionary Computation, 3:199-230.
11. Netten, H. (1997). Automated Image Analysis of FISHStained Cell Nuclei. PhD thesis, Delft University of Technology.
12. Santos,A.,OrtizdeSolórzano,C.,Vaquero,J.J.,Peña,J.M., Malpica,N.,anddelPozo,F.(1997). Evaluationofautofocusfunctionsinmolecularcytogeneticanalysis. JournalofMicroscopy,188:264-272.(Pubitemid28030186)
13. Silva, S. and Almeida, J. (2003a). Dynamic maximum tree depth - a simple technique for avoiding bloat in treebased gp. In Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2003).
14. Silva, S. and Almeida, J. (2003b). Gplab - a genetic programming toolbox for matlab. In Proceedings of the Nordic MATLAB Conference (NMC-2003), pages 273-278.
15. Sun, Y., Duthaler, S., and Nelson, B. J. (2004). Autofocusing in computer microscopy: Selecting the optimal focus algorithm. Microscopy Research and Technique, 65:139-149. (Pubitemid 40066729)