High-resolution cytometry of FISH dots in interphase cell nuclei

Cytometry

Volumn 36, Issue 4, 1999, Pages 279-293

  Kozubek, Michal ^a   Kozubek, S ^b   Lukasova E ^b   Mareckova A ^b   Bartova E ^b   Skalnikova M ^a   Jergova A ^a  

^a MASARYK UNIVERSITY   (Czech Republic)

^b INSTITUTE OF BIOPHYSICS   (Czech Republic)

Author keywords

3 D analysis; Automated microscopy; Fluorescence in situ hybridization; Fluorescence microscopy; High resolution cytometry; Image analysis; Interphase nuclei

Indexed keywords

ARTICLE; AUTOMATION; CELL NUCLEUS; COMPUTER ANALYSIS; COMPUTER NETWORK; CYTOMETRY; FLUORESCENCE IN SITU HYBRIDIZATION; HUMAN; IMAGE ANALYSIS; IMAGE PROCESSING; INTERPHASE; PRIORITY JOURNAL;

CELL NUCLEUS; COMPUTERS; FLOW CYTOMETRY; HISTOCYTOCHEMISTRY; HL-60 CELLS; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; INTERPHASE; MICROSCOPY, CONFOCAL; REPRODUCIBILITY OF RESULTS; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 0033178879     PISSN: 01964763     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0320(19990801)36:4<279::AID-CYTO2>3.0.CO;2-G     Document Type: Article

References (38)

1. Boddeke FR, Van Vliet LJ, Netten H, Young IT. Autofocusing in microscopy based on the OTF and sampling. Bioimaging 1994;2:193-203.
2. Carothers AC. Counting, measuring, and mapping in FISH-labeled cells: sample size considerations and implications for automation. Cytometry 1994;16:298-304.
3. Castleman KR, White BS. Dot count proportion estimation in FISH specimens. Bioimaging 1995;3:88-93.
4. Cremer T, Lichter P, Borden J, Ward DC, Manuelidis L. Detection of chromosome aberrations in metaphase and interphase tumor cells by in situ hybridization using chromosome-specific library probes. Hum Genet 1988;80:235-246.
5. Cremer T, Kurz A, Zirbel R, Dietzel S, Rinke B, Schröck E, Speicher MR, Mathieu U, Jauch A, Emmerich P, Scherthan H, Ried T, Cremer C, Lichter P. Role of chromosome territories in the functional compartmentalization of the cell nucleus. Cold Spring Harbor Symp Quant Biol 1993;58:777-792.
6. Eils R, Bertin E, Saracoglu K, Rinke B, Schröck E, Parazza F, Usson Y, Robert-Nicoud M, Stelzer EHK, Chassery JM, Cremer T, Cremer C. Application of confocal laser microscopy and three-dimensional Voronoi diagrams for volume and surface estimates of interphase chromosomes. J Microsc 1995;177:150-161.
7. Engh G van den, Sachs R, Trask BJ. Estimating genomic distance from DNA sequence location in cell nuclei by a random walk model. Science 1992;257:1410-1411.
8. Firestone L, Cook K, Culp K, Talsania N, Preston K. Comparison of autofocus methods for automated microscopy. Cytometry 1991;12: 195-206.
9. Garcia-Isidoro M, Tabernero MD, GarciaJL, Najera ML, Hernandez JM, Wiegant J, Raap A, Miguel JS, Orfao A. Detection of the Mbcr/abl translocation in chronic myeloid leukemia by fluorescence in situ hybridization: comparison with conventional cytogenetics and implications for minimal residual disease detection. Hum Pathol 1997;28: 154-159.
10. Groen FCA, Young IT, Ligthart G. Comparison of different focus functions for use in autofocus algorithms. Cytometry 1985;6:81-91.
11. Höfers Ch, Baumann P, Hummer G, Jovin TM, Arndt-Jovin DJ. The localization of chromosome domains in human interphase nuclei. Three-dimensional distance determination of fluorescence in situ hybridization signals from confocal laser scanning microscopy. Bioimaging 1993;1:96-106.
12. Hopman AHN, Moesker O, Smeets AWGB, Pauwels RPE, Vooijs GP, Ramaekers FCS. Numerical chromosome 1, 7, 9 and 11 aberrations in bladder cancer detected by in situ hybridization. Cancer Res 1991;51: 644-651.
13. 1 human lymphocytes. Chromosoma 1994;103:286-292.
14. Joyce-Loebl. Image analysis: principles and practice. London: Company publication of Joyce Loebl; 1985. 208 p.
15. Kamentsky LA, Burger DE, Gershman RJ, Kamentsky LD, Luther E. Slide-based laser scanning cytometry. Acta Cytol 1997;41:123-143.
16. Kamentsky LA, Kamentsky LD, Fletcher JA, Kurose A, Sasaki K. Methods for automatic multiparameter analysis of fluorescence in situ hybridized specimens with a laser scanning cytometer. Cytometry 1997;27:117-125.
17. Kibbelaar RE, Kok F, Dreef EJ, Kleiverda JK, Cornelisse CJ, Raap AK. Statistical methods in interphase cytogenetics: an experimental approach. Cytometry 1993;14:716-724.
18. Kozubek M, Kozubek S, Lukasova E, Amrichova J, Ryznar L, Liskova A. Semi-automated FISH-stained interphase nuclei analysis in human genome studies. In: Slavik J, editor. Fluorescence microscopy and fluorescent probes. 2nd vol. New York: Plenum Press; 1998. p 183-189.
19. Kozubek M, Kozubek S, Lukasova E, Ryznar L, Liskova A, Amrichova J, Horneck G. Advances in computer analysis of radiation-induced changes in human genome. In: Baumstark-Khan C, Kozubek S, Horneck G, editors. Fundamentals for the assessment of risks from environmental radiation. NATO ASI Series. Dordrecht, The Netherlands: Kluwer Academic Publishers B.V.; 1999. p 243-248.
20. Kozubek S, Lukasova E, Ryznar L, Kozubek M, Liskova A, Govorun RD, Krasavin EA, Horneck G. Distribution of ABL and BCR genes in cell nuclei of normal and irradiated lymphocytes. Blood 1997;89:4537-4545.
21. Kozubek S, Lukasova E, Ryznar L, Kozubek M, Liskova A, Kroha V. Chromatin structure and its cell cycle kinetics in intact and irradiated cell nuclei. In: Baumstark-Khan C, Kozubek S, Horneck G, editors. Fundamentals for the assessment of risks from environmental radiation. NATO ASI Series. Dordrecht, The Netherlands: Kluwer Academic Publishers B.V.; 1999. p 231-242.
22. Lukasova E, Kozubek S, Kozubek M, Kjeronska J, Ryznar L, Horakova J, Krahulcova E, Horneck G. Localization and distance between ABL and BCR genes in interphase nuclei of bone marrow cells of control donors and patients with chronic myeloid leukaemia. Hum Genet 1997;100:525-535.
23. Lukasova E, Kozubek S, Kozubek M, Kroha V, Mareckova A, Skalnikova M, Bartova E, Slotova J. Chromosomes participating in translocations typical of malignant haemoblastoses are also involved in exchange aberrations induced by fast neutrons. Radiat Res 1999;151: 375-384.
24. Netten H, Van Vliet LJ, Vrolijk H, Sloos WCR, Tanke HJ, Young IT. Fluorescent dot counting in interphase cell nuclei. Bioimaging 1996;4: 93-106.
25. Netten H, Young IT, Van Vliet LJ, Tanke HJ, Vrolijk H, Sloos WCR. FISH and chips: automation of fluorescent dot counting in interphase cell nuclei. Cytometry 1997;28:1-10.
26. Ortiz de Solórzano C, Santos A, Vallcorba I, García-Sagredo JM, Pozo F del. Automated FISH spot counting in interphase nuclei: statistical validation and data correction. Cytometry 1998;31:93-99.
27. Pinkel D, Landegent J, Collins C, Fuscoe J, Segraves R, Lucas J, Gray J. Fluorescence in situ hybridization with human chromosome specific libraries: detection of trisomy 21 and translocation of chromosome 4. Proc Natl Acad Sci U S A 1988;85:9138-9142.
28. Popp S, Scholl HP, Loos P, Jauch A, Stelzer E, Cremer Ch, Cremer T. Distribution of chromosome 18 and X centric helerochromatin in the interphase nucleus of cultured human cells. Exp Cell Res 1990;189:1-12.
29. Pratt WK. Digital image processing. New York: John Wiley & Sons Inc.; 1991. 597 p.
30. Preparata FP, Shamos MI. Computational geometry: an introduction. New York: Springer-Verlag; 1985. 110 p.
31. Sachs RK, Engh G van den, Trask B, Yokota H, Hearst JE. A random-walk / giant-loop model for interphase chromosomes. Proc Natl Acad Sci U S A 1995;92:2710-2714.
32. Serra J. Image analysis and mathematical morphology. London: Academic Press; 1982. 415 p.
33. Tanke HJ, Florijn RJ, Wiegant J, Raap AK, Vrolijk J. CCD microscopy and image analysis of cells and chromosomes stained by fluorescence in situ hybridization. Histochem J 1995;27:4-14.
34. Taylor DL, Harris LD, DeBiasio R, Fahlman SE, Farkas DL, Lanni F, Nederlof M, Gough AH. Automated interactive microscopy: measuring and manipulating the chemical and molecular dynamics of cells and tissues. Proc SPIE 1996;2678:15-27.
35. Tkatchuk D, Westbrook C, Andreef M, Donlon TA, Cleary ML, Suryanarayan K, Homge M, Redner A. Gray JW, Pinkel D. Detection of BCR-ABL fusion in chronic myelogeneous leukemia by two color fluorescence in situ hybridization. Science 1990;220:559-562.
36. Vincent L, Soille P. Watersheds in digital spaces: an efficient algorithm based on immersion simulations. IEEE Trans Patt Anal Mach Intell 1991;13:583-598.
37. 1 phase in human lymphocytes. Hum Genet 1992;88:673-682.
38. Zink D, Cremer T. Cell nucleus: Chromosome dynamics in nuclei of living cells. Curr Biol 1998,8:R321-R324.