Structure-activity relations of nanolipoblockers with the atherogenic domain of human macrophage scavenger receptor A

Biomacromolecules

Volumn 10, Issue 6, 2009, Pages 1381-1391

  Plourde, Nicole M ^a   Kortagere, Sandhya ^c,d   Welsh, William ^d   Moghe, Prabhas V ^a,b  

^a The State University of New Jersey   (United States)

^b RUTGERS UNIVERSITY   (United States)

^c DREXEL UNIVERSITY COLLEGE OF MEDICINE   (United States)

^d RUTGERS ROBERT WOOD JOHNSON MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALKYL CHAIN; ANIONIC GROUPS; CHARGED RESIDUES; CHOLESTEROL ACCUMULATION; FUNCTIONALIZED; HOMOLOGY MODELS; HUMAN MACROPHAGES; MUCIC ACIDS; OPTIMAL BINDING; OXIDIZED LOW-DENSITY LIPOPROTEINS (OXLDL); SCAVENGER RECEPTOR; STRUCTURAL STUDIES; STRUCTURE-ACTIVITY RELATION; STRUCTURE-ACTIVITY RELATIONSHIPS; THEORETICAL MODELING;

DOCKING; ETHYLENE GLYCOL; MACROPHAGES; POLYETHYLENE GLYCOLS; POLYETHYLENE OXIDES;

BINDING ENERGY;

ALANINE; BIOMATERIAL; LYSINE; MACROGOL; NANOLIPOBLOCKER; OXIDIZED LOW DENSITY LIPOPROTEIN; SCAVENGER RECEPTOR A; UNCLASSIFIED DRUG;

ARTICLE; CELL INTERACTION; CONTROLLED STUDY; EVOLUTIONARY HOMOLOGY; HUMAN; HUMAN CELL; MACROPHAGE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN STRUCTURE; STRUCTURE ACTIVITY RELATION; THEORETICAL MODEL;

ATHEROSCLEROSIS; CELL LINE; FLUORESCENCE; HUMANS; MODELS, MOLECULAR; MUTATION; NANOPARTICLES; SCAVENGER RECEPTORS, CLASS A; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 67049117928     PISSN: 15257797     EISSN: None     Source Type: Journal    
DOI: 10.1021/bm8014522     Document Type: Article

References (44)

1. Li, A. C.; Glass, C. K. Nat. Med. 2002, 8 (11), 1235-1242.
2. Berliner, J.; Leitinger, N.; Watson, A.; Huber, J.; Fogelman, A.; Navab, M. Thromb. Haemostasis 1997, 78 (1), 195-199.
3. Williams, K. J.; Tabas, I. Curr. Opin. Lipidol. 1998, 9 (5), 471-474.
4. Takahashi, Y.; Kinoshita, T.; Sakashita, T.; Inoue, H.; Tanabe, T.; Takahashi, K. Adv. Exp. Med. Biol. 2002, 507, 403-407.
5. Brown, M. S.; Goldstein, J. L. Annu. Rev. Biochem. 1983, 52, 223-261.
6. Steinberg, D. J. Biol. Chem. 1997, 272, 20963-20966.
7. Kunjathoor, V. V.; Febbraio, M.; Podrez, E. A.; Moore, K. J.; Andersson, L.; Koehn, S.; Rhee, J.; Silverstein, R.; Hoff, H. F.; Freeman, M. W. J. Biol. Chem. 2002, 277, 49982-49988.
8. Yla-Herttuala, S.; Hiltunen, T. P. Atherosclerosis 1998, 137, S81-S88.
9. Zhang, H.; Yang, Y.; Steinbrecher, U. P. J. Biol. Chem. 1993, 268, 5535-5542.
10. de Winther, M. P.; van Dijk, K. W.; Havekes, L. M.; Hofker, M. H. Arterioscler. Thromb. Vasc. Biol. 2000, 20 (2), 290-297.
11. Platt, N.; Gordon, S. J. Clin. Invest. 2001, 108 (5), 649-654.
12. Wang, X.; Greilberger, J.; Ratschek, M.; Juergens, G. J. Pathol. 2001, 195, 244-250.
13. Yamada, H.; Kazumi, Y.; Doi, N.; Otomo, K.; Aoki, T.; Mizuno, S.; Udagawa, T.; Tagawa, Y.; Iwakura, Y.; Yamada, Y. J. Med. Microbiol. 1998, 47 (10), 871-877.
14. Boullier, A.; Friedman, P.; Harkewicz, R.; Hartvigsen, K.; Green, S. R.; Almazan, F.; Dennis, E. A.; Steinberg, D.; Witztum, J. L.; Quehenberger, O. J. Lipid Res. 2005, 46, 969-976.
15. Yoshiizumi, K.; Nakajima, F.; Dobashi, R.; Nishimura, N.; Ikeda, S. Bioorg. Med. Chem. Lett. 2004, 14 (11), 2791-2795.
16. Guaderrama-Diaz, M.; Solis, C. F.; Velasco-Loyden, G.; Laclette, J. P.; Mas-Oliva, J. Mol. Cell. Biochem. 2005, 271 (1-2), 123-132.
17. Broz, P.; Benito, S. M.; Saw, C.; Burger, P.; Heider, H.; Pfisterer, M.; Marsch, S.; Meier, W.; Hunziker, P. J. Controlled Release 2005, 102 (2), 475-488.
18. Tian, L.; Yam, L.; Zhou, N.; Tat, H.; Uhrich, K. E. Macromolecules 2004, 37 (2), 538-543.
19. Harmon, A. M.; Uhrich, K. E. J. Bioact. Compat. Polym. 2009, 24 (2), 185-197.
20. Chnari, E.; Nikitczuk, J. S.; Uhrich, K. E.; Moghe, P. V. Biomacromolecules 2006, 7 (2), 597-603.
21. Chnari, E.; Nikitczuk, J. S.; Wang, J.; Uhrich, K. E.; Moghe, P. V. Biomacromolecules 2006, 7 (6), 1796-1805.
22. Andersson, L.; Freeman, M. W. J. Biol. Chem. 1998, 273, 19592-19601.
23. Doi, T.; Higashino, K.; Kurihara, Y.; Wada, Y.; Miyazaki, T.; Nakamura, H.; Uesugi, S.; Imanishi, T.; Kawabe, Y.; Itakura, H. J. Biol. Chem. 1993, 268 (3), 2126-2133.
24. Acton, S.; Resnick, D.; Freeman, M.; Ekkel, Y.; Ashkenas, J.; Krieger, M. J. Biol. Chem. 1993, 268 (5), 3530-3537.
25. Dejager, S.; Mietus-Snyder, M.; Friera, A.; Pitas, R. E. J. Clin. Invest. 1993, 92 (2), 894-902.
26. Chnari, E.; Tian, L.; Uhrich, K.; Moghe, P. V. Biomaterials 2005, 26, 3749-3758.
27. Wang, J.; Plourde, N. M.; Iverson, N.; Moghe, P. V.; Uhrich, K. E. Int. J. Nanomed. 2007, 2 (4), 697-705.
28. Chang, M. Y.; Potter-Perigo, S.; Wight, T. N.; Chait, A. J. Lipid Res. 2001, 42, 824-833.
29. Oorni, K.; Pentikainen, M. O.; Annila, A.; Kovanen, P. T. J. Biol. Chem. 1997, 272, 21303-21311.
30. Wang, J. M.; Cieplak, P.; Kollman, P. A. J. Comput. Chem. 2000, 21 (12), 1049-1074.
31. Altschul, S. F.; Madden, T. L.; Schaffer, A. A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D. J. Nucleic Acids Res. 1997, 25 (17), 3389-3402.
32. Thompson, J. D.; Higgins, D. G.; Gibson, T. J. Nucleic Acids Res. 1994, 22 (22), 4673-4680.
33. Orgel, J. P.; Irving, T. C.; Miller, A.; Wess, T. J. Proc. Natl. Acad. Sci. U.S.A. 2006, 103 (24), 9001-9005.
34. Jones, D. T. J. Mol. Biol. 1999, 292 (2), 195-202.
35. McGuffin, L. J.; Bryson, K.; Jones, D. T. Bioinformatics 2000, 16 (4), 404-405.
36. Sali, A.; Blundell, T. L. J. Mol. Biol. 1993, 234 (3), 779-815.
37. MacKerell, A. D.; Bashford, D.; Bellott, M.; Dunbrack, R. L.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph-McCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E.; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wiorkiewicz-Kuczera, J.; Yin, D.; Karplus, M. J. Phys. Chem. B 1998, 102 (18), 3586-3616.
38. Braun, W.; Go, N. J. Mol. Biol. 1985, 186 (3), 611-626.
39. Case, D. A.; Cheatham, T. E., 3rd; Darden, T.; Gohlke, H.; Luo, R.; Merz, K. M., Jr.; Onufriev, A.; Simmerling, C.; Wang, B.; Woods, R. J. J. Comput. Chem. 2005, 26 (16), 1668-1688.
40. Yamamoto, K.; Nishimura, N.; Doi, T.; Imanishi, T.; Kodama, T.; Suzuki, K.; Tanaka, T. FEBS Lett. 1997, 414 (2), 182-186.
41. Jones, G.; Willet, P.; Glen, R. C.; Leach, A. R.; Taylor, R. J. Mol. Biol. 1997, 267, 727-748.
42. Yonath, A.; Traub, W. J. Mol. Biol. 1969, 43 (3), 461-477.
43. Hakansson, K.; Lim, N. K.; Hoppe, H. J.; Reid, K. B. Structure 1999, 7 (3), 255-264.
44. Otsuka, H.; Nagasaki, Y.; Kataoka, K. Curr. Opin. Colloid Interface Sci. 2001, 6 (1), 3-10.