Proteome analysis of rat bone marrow mesenchymal stem cell subcultures

Journal of Proteome Research

Volumn 8, Issue 5, 2009, Pages 2164-2172

  Celebi, Betul ^a   Elcin, Y Murat ^a  

^a ANKARA UNIVERSITY   (Turkey)

Author keywords

Bone marrow; MALDI TOF MS; Mesenchymal stem cells; Multipotent stromal cells; Proteome analysis; Rat; Self Renewal; Serial passaging; Stem cells; Subculture

Indexed keywords

ADENYLATE KINASE; BETA TUBULIN; CATHEPSIN D; CELL CYCLE PROTEIN; CONNEXIN 31; CYTOSKELETON PROTEIN; IDITOL DEHYDROGENASE; INWARDLY RECTIFYING POTASSIUM CHANNEL; JUNCTIONAL ADHESION MOLECULE A; N ACETYL BETA GLUCOSAMINIDASE; PHOSPHATIDYLCHOLINE STEROL ACYLTRANSFERASE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATASE; SOMATOSTATIN RECEPTOR 3; SOMATOSTATIN RECEPTOR 5; SQUALENE MONOOXYGENASE;

AMINO ACID SEQUENCE; ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; BONE MARROW CELL; CELL ADHESION; CELL CULTURE; CELL CYCLE; CELL DIFFERENTIATION; CELL GROWTH; CELL INTERACTION; CELL PROLIFERATION; CELL STRUCTURE; CELL VIABILITY; CONTROLLED STUDY; ION TRANSPORT; MALE; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MESENCHYMAL STEM CELL; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEOMICS; RAT; SIGNAL TRANSDUCTION; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ANIMALS; BONE MARROW CELLS; CELL PROLIFERATION; CELL SURVIVAL; CELLS, CULTURED; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; MALE; MESENCHYMAL STEM CELLS; PROTEOME; PROTEOMICS; RATS; RATS, WISTAR; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TIME FACTORS;

RATTUS; RATTUS NORVEGICUS;

EID: 66749123020     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr800590g     Document Type: Article

References (50)

1. Colter, C. D.; Sekiya, I.; Prockop, D. J. Identification of a subpopu- lation of rapidly self-renewing and multipotential adult stem cells in colonies of human marrow stromal cells. Cell Biol . 2001, 98 (14), 7841-7845.
2. Kassem, M.; Abdallah, B. M. Human bone-marrow-derived mesenchymal stem cells: biological characteristics and potential role in therapy of degenerative diseases. Cell Tissue Res . 2008, 331 , 1157-163.
3. Eslaminejad, M. B.; Nikmahzar, A.; Taghiyar, L.; Nadri, S.; Massumi, M. Murine mesenchymal stem cells isolated by low density primary culture system. Dev. Growth Differ . 2006, 48 , 361-370.
4. Forbes, S. J.; Vig, P.; Poulsom, R.; Wright, N. A.; Alison, M. R. Adult stem cell plasticity: new pathways of tissue regeneration become visible. Clin. Sci . 2002, 103 , 355-369.
5. Hung, S. C.; Chen, N. J.; Hsieh, S. L.; Li, H.; Ma, H. L.; Lo, W. H. Isolation and characterization of size-sieved stem cells from human bone marrow. Stem Cells 2002, 20 , 249-258.
6. Hassan, H. T.; El-Sheemy.. Adult bone-marrow stem cells and their potential in medicine. J. R. Soc. Med . 2004, 97 , 465-471.
7. Koc, A.; Emin, N.; Elcin, A. E.; Elcin, Y. M. In vitro osteogenic differentiation of rat mesenchymal stem cells in a microgravity bioreactor. J. Bioact. Comp. Pol . 2008, 23 (3), 244-261.
8. Pittenger, M. F.; Mackay, A. M.; Beck, S. C.; Jaiswal, R. K.; Douglas, R.; Mosca, J. D.; Moorman, M. A.; Simonetti, D. W.; Craig, S.; Marshak, D. R. Multilineage potential of adult human mesenchy- mal stem cells. Science 1999, 284 (5411), 143-147.
9. Barrilleaux, B.; Phinney, D. G.; Prockop, D. J.; O'Connor, K. C. Ex vivo engineering of living tissues with adult stem cells. Tissue Eng . 2006, 12 (11), 1-13.
10. Baksh, D.; Song, L.; Tuan, R. S. Adult mesenchymal stem cells: characterization, differentiation, and application in cell and gene therapy. J. Cell. Mol. Med . 2004, 8 (3), 301-316.
11. Digirolamo, C. M.; Stokes, D.; Colter, D.; Donald, G. P.; Class, R.; Prockop, D. J. Propagation and senescence of human marrow stromal cells in culture: a simple colony-forming assay identifies samples with the greatest potential to propagate and differentiate. Br. J. Haemotol . 1999, 107 , 275-281.
12. Bianco, P.; Riminucci, M.; Gronthos, S.; Robey, P. G. Bone marrow stromal cells: nature, biologyand potential applications. Stem Cells 2001, 19 , 180-192.
13. Grove, J. E.; Bruscia, E.; Krause, D. S. Plasticity of bone marrow- derived stem cells. Stem Cells 2004, 22 , 487-500.
14. Elcin, Y. M. Tissue Engineering, Stem Cells and Gene Therapies, Advances in Experimental Medicine and Biology Series 534 , Kluwer- Plenum: New York, 2003.
15. Kardiyala, S.; Jaiswal, N.; Bruder, S. P. Culture expanded bone marrow derived mesenchymal stem cells can regenerate a critical sized segmental bone deffect. Tissue Eng . 1997, 3 , 173-185.
16. Friedenstein, A.; Gorskaja, U.; Kalugina, N. In vitro growth of bone marrow aspirate derived cell colonies. Exp. Hematol . 1976, 4 , 267-274.
17. Javazon, E. H.; Colter, D. C.; Schwarz, E. J.; Prockop, D. J. Rat marrow stromal cells are more sensitive to plating density and expand more rapidly from single-cell-derived colonies than human marrow stromal cells. Stem Cells 2001, 19 (3), 219-225.
18. Jiang, X. S.; Zhou, H.; Zhang, L.; Sheng, Q. H.; Li, S. J.; Li, L.; Hao, P.; Li, Y. X.; Xia, Q. C.; Wu, R. J.; Zeng, R. A High-throughput approach for subcellular proteome: Identification of rat liver proteins using subcellular fractionation coupled with two- dimensional liquid chromatography tandem mass spectrometry and bioinformatic analysis. Mol. Cell. Proteomics 2004, 3 (5), 441-455.
19. Wang, D.; Park, J. S.; Chu, S. J. F.; Ari, K.; Luo, K.; Chen, D. J.; Li, S. Proteomic profiling of bone marrow mesenchymal stem cells upon transforming growth factor p1 stimulation. J. Biol. Chem . 2004, 279 , 43725-43734.
20. Ye, N. S.; Chen, J.; Luo, G. A.; Zhang, R. L.; Zhao, Y. F.; Wang, Y. M. Proteomic profiling of rat bone marrow mesenchymal stem cells induced by 5-azacytidine. Stem Cells Dev . 2006, 15 (5), 665-676.
21. Sun, H. J.; Bahk, Y. Y.; Choi, Y. R.; Shim, J. H.; Han, S. H.; Lee, J. W. Aproteomic analysis during serial subculture and osteogenic differentiation of human mesenchymal stem cell. J. Orthop. Res . 2006, 24 , 2059-2071.
22. Zhang, A. X.; Yu, W. H.; Ma, B. F.; Yu, X. B.; Mao, F. F.; Liu, W. L.; Zhang, X. M.; Li, S. N.; Li, M. T.; Lahn, B. T.; Xiang, A. P. Proteomic identification of differently expressed proteins responsible for osteoblast differentiation from human mesenchymal stem cells. Mol. Cell. Biochem . 2007, 304 , 167-179.
23. Salaszynyk, R. M.; Klees, F. R.; Westcott, A. M.; Vandenberg, S. L.; Bennett, K. P.; Plopper, E. G. Focusing of gene expression as the basis of stem cell differentiation. Stem Cells Dev . 2005, 14 (4), 354-366.
24. Nengsheng, Y.; Rongli, Z.; Guoan, L.; Xue, F.; Yanfeng, Z.; Yiming, W. Proteome analysis of chinese miniswine bone marrow mes- enchymal stem cells. Chin. J. Anal. Chem . 2006, 34 (8), 1053-1057.
25. Feldmann, R. E. Jr.; Bieback, K.; Maurer, H. M.; Kalenka, A.; Burgers, H. F.; Gross, B.; Hunzinger, C.; Kluter, H.; Kuschinsky, W.; Eichler, H. Stem cell proteomes: A profile of human mesen- chymal stem cells derived from umbilical cord blood. Electro- phoresis 2005, 26 (14), 2749-2758.
26. Bonab, M. M.; Alimoghaddam, K.; Talebian, F.; Ghaffari, S. H.; Ghavamzadeh, A.; Nikbin, B. Aging of mesenchymal stem cells in vitro. BMC Cell Biol . 2006, 7 (14), 1-7.
27. Wagner, W.; Horn, P.; Castoldi, M.; Diehlman, A.; Bork, S.; Saffrich, R.; Benes, V.; Blake, J.; Pfister, S.; Eckstein, V.; Ho, A. D. Replicative senescence of mesenchymal stem cells: A continuous and organized process. PLoS ONE 2008, 3 (5), e2213.
28. Karmin, O.; Hill, J. S.; Wang, X.; McLeod, R.; Pritchard, P. H. Lecithin cholesterol acyltransferase: role of N-linked glycosylation in enzyme function. Biochem. J . 1993, 294 , 879-884.
29. El-Kabbani, O.; Darmanin, C.; Chung, R. P. T. Sorbitol dehydrogenase: structure, function and ligand design. Curr. Med. Chem . 2004, 11 (4), 465-476.
30. Huck, J. H.; Roos, B.; Jakobs, C.; van der Knaap, M. S.; Verhoeven, N. M. Evaluation of pentitol metabolism in mammalian tissues provides new insight into disorders of human sugar metabolism. Mol. Genet. Metab . 2004, 82 (3), 231-237.
31. Ferguson, J. B.; Bloch, K. Purification and properties of a soluble protein activator of rat liver squalene epoxidase. J. Biol. Chem . 1977, 252 , 5381-5385.
32. Astruc, M.; Tabacik, C.; Descomps, B.; de Paulet, A. C. Squalene epoxidase and oxidosqualene lanosterol-cyclase activities in cho- lesterogenic and non-cholesterogenic tissues. Biochim. Biophys. Acta 1977, 487 (1), 204-211.
33. Schindler, J.; Lewandrowski, U.; Sickmann, A.; Friauf, E.; Nothwang, H. G. Proteomic analysis of brain plasma membranes isolated by affinity two-phase partitioning. Mol. Cell. Proteomics 2006, 5 , 390-400.
34. Nakamura, N.; Suzuki, Y.; Ikeda, Y.; Notoya, M.; Hirose, S. Complex structure and regulation of expression of the rat gene for inward rectifier potassium channel Kir7.1. J. Biol. Chem . 2000, 275 (36), 28276-28284.
35. Denk, G. U.; Cai, S. Y.; Chen, W. S.; Lin, A.; Soroka, C. J.; Boyer, J. L. A comparison of gene expression in mouse liver and kidney in obstructive cholestasis utilizing high-density oligonucleotide microarray technology. World J. Gastroenterol . 2006, 1216 , 2536-2548.
36. Pascual-Le Tallec, L.; Lombes, M. The mineralocorticoid receptor: a journey exploring its diversity and specificity of action. Mol. Endocrinol . 2005, 19 (9), 2211-2221.
37. Marumo, T.; Uchimura, H.; Hayashi, M.; Hishikawa, K.; Fujita, T. Aldosterone impairs bone marrow-derived progenitor cell formation. Hypertension . 2006, 48 (3), 490-496.
38. Ben-Shlomo, A.; Wawrowsky, K. A.; Proekt, I.; Wolkenfeld, N. M.; Ren, S. G.; Taylor, J.; Culler, M. D.; Melmed, S. Somatostatin receptor type 5 modulates somatostatin receptor type 2 regulation of ACTH secretion. J. Biol. Chem . 2005, 280 (25), 24011-24021.
39. Ben-Shlomo, A.; Pichurin, O.; Barshop, N. J.; Wawrowsky, K. A.; Taylor, J.; Culler, M. D.; Chesnokova, V.; Liu, N. A.; Melmed, S. Selective regulation of somatostatin receptor subtype signaling: Evidence for constitutive receptor activation. Mol. Endocrinol . 2007, 21 (10), 2565-2578.
40. Welle, S.; Brooks, A. I.; Delehanty, J. M.; Needler, N.; Thornton, C. A. Gene expression profile of aging in human muscle. Physiol. Genomics 2003, 14 , 149-159.
41. Rautajoki, K. J.; Marttila, E. M.; Nyman, T. A.; Lahesmaa, R. IL-4 inhibits Caspase-3 by regulating several proteins in the Fas pathway during initial stages of human Th2 cell differentiation. Mol. Cell. Proteomics 2006, 6 , 238-251.
42. Ellen, T. P.; Ke, Q.; Zhang, P.; Costa, M. NDRG1, a growth and cancer related gene: regulation of gene expression and function in normal and disease states. Carcinogenesis 2008, 29 (1), 2-8.
43. Broghammer, M.; Leistenschneider, P.; Baus-Loncar, M.; Blin, N.; Sasiadek, M. M.; Pusch, C. M. Reduced expression of connexin 31.1 in larynx cancer is not caused by GJB5 mutations. Cancer Lett . 2004, 214 (2), 225-229.
44. Naik, M. U.; Naik, U. P. Junctional adhesion molecule-A-induced endothelial cell migration on vitronectin is integrin LvD3 specific. J. Cell Sci . 2006, 119 , 490-499.
45. Naik, U. P.; Eckfeld, K. Junctional adhesion molecule 1 (JAM-1). J. Biol. Regul. Homeostatic Agents 2003, 17 (4), 341-347.
46. Naik, M. U.; Vuppalanchi, D.; Naik, U. P. Essential role of junctional adhesion molecule-1 in basic fibroblast growth factor-induced endothelial cell migration. Arterioscler., Thromb., Vasc. Biol . 2003, 23 (12), 2165-2171.
47. Sun, H. J.; Bahk, Y. Y.; Choi, Y. R.; Shim, J. H.; Han, S. H.; Lee, J. W. A proteomic analysis during serial subculture and osteogenic differentiation of human mesenchymal stem cell. J. Orthop. Res . 2006, 24 (11), 2059-2071.
48. Czupalla, C.; Mansukoski, H.; Riedl, T.; Thiel, D.; Krause, E.; Hoflack, B. Proteomic analysis of lysosomal acid hydrolases secreted by osteoclasts. Mol. Cell. Proteomics 2006, 5 , 134-143.
49. Fisher, K. J.; Aronson, N. N. Cloning and expression of the cDNA sequence encoding the lysosomal glycosidase di-N-acetylchitobi- ase. J. Biol. Chem . 1992, 26727 , 19607-19616.
50. Tan, B.; Long, X.; Nakshatri, H.; Nephew, K. P.; Bigsby, R. M. Striatin-3 gamma inhibits estrogen receptor activity by recruiting a protein phosphatase. Mol. Endocrinol . 2008, 40 (5), 199-210.