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Volumn 6, Issue 4, 2009, Pages 246-251

DNA binders: 2. Molecular recognition of DNA by 2,3,6,7-tetrahydro-1H- pyrrolo[1,2-a]indole-1,8(5H)-dione bis(4,5-dihydro-1H-imidazol-2-ylhydrazone) as a prototype of "two-armed" intercalating agents

Author keywords

2,3,6,7 Tetrahydro 1H pyrrolo 1,2 a indole 1, 8(5H) dione bis(4,5 dihydro 1H imidazol 2 yl hydrazone); DNA binders; Intercalation; Molecular dynamic; Relaxed complex method; Two armed derivatives; Viscosimetry

Indexed keywords

2,3,6,7 TETRAHYDRO 1H PYRROLO[1,2 A]INDOLE 1,8(5H) DIONE BIS(4,5 DIHYDRO 1H IMIDAZOL 2 YL HYDRAZONE); HYDRAZONE DERIVATIVE; INTERCALATING AGENT; LIGAND; UNCLASSIFIED DRUG;

EID: 66349101310     PISSN: 15701808     EISSN: None     Source Type: Journal    
DOI: 10.2174/157018009788452537     Document Type: Article
Times cited : (2)

References (20)
  • 2
    • 0034979318 scopus 로고    scopus 로고
    • Biomolecular simulations: Recent developments in force fields, simulations of enzyme catalysis, protein-ligand, protein-protein, and protein-nucleic acid noncovalent interactions
    • DOI 10.1146/annurev.biophys.30.1.211
    • Wang, W.; Donini, O.; Reyes, C. M.; Kollman, P. A. Biomolecular simulations: recent developments in force fields, simulations of enzyme catalysis, protein- ligand, protein- protein, and proteinnucleic acid noncovalent interactions. Ann. Rev. Biophys. Biomol. Struct., 2001, 30, 211-243. (Pubitemid 32566163)
    • (2001) Annual Review of Biophysics and Biomolecular Structure , vol.30 , pp. 211-243
    • Wang, W.1    Donini, O.2    Reyes, C.M.3    Kollman, P.A.4
  • 3
    • 3142716857 scopus 로고    scopus 로고
    • Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules
    • Hamelberg, D.; Mongan, J.; McCammon, J. A. Accelerated molecular dynamics: a promising and efficient simulation method for biomolecules. J. Chem. Phys., 2004, 120, 11919-11929.
    • (2004) J. Chem. Phys. , vol.120 , pp. 11919-11929
    • Hamelberg, D.1    Mongan, J.2    McCammon, J.A.3
  • 4
    • 33646943202 scopus 로고    scopus 로고
    • Molecular dynamics: Survey of methods for simulating the activity of proteins
    • DOI 10.1021/cr040426m
    • Adcock, S. A.; McCammon, J. A. Molecular dynamics: survey for simulating the activity of proteins. Chem. Rev., 2006, 106, 1589-1615. (Pubitemid 43792773)
    • (2006) Chemical Reviews , vol.106 , Issue.5 , pp. 1589-1615
    • Adcock, S.A.1    McCammon, J.A.2
  • 5
    • 0042853244 scopus 로고    scopus 로고
    • Protein Flexibility and Computer-Aided Drug Design
    • DOI 10.1146/annurev.pharmtox.43.100901.140216
    • Wong, C. F.; McCammon, J.A. Protein flexibility and computeraided drug design. Annu. Rev. Pharmacol. Toxicol., 2003, 43, 31-45. (Pubitemid 37372633)
    • (2003) Annual Review of Pharmacology and Toxicology , vol.43 , pp. 31-45
    • Wong, C.F.1    McCammon, J.A.2
  • 7
    • 61849130722 scopus 로고    scopus 로고
    • DNA binders: 1. Evaluation of DNA-interactive ability, design, and synthesis of novel intercalating agents
    • Sechi, M.; Derudas, M.; Dallocchio, R.; Dessì, A.; Cosseddu, A.; Paglietti, G. DNA binders: 1. Evaluation of DNA-interactive ability, design, and synthesis of novel intercalating agents. Lett. Drug Des. Discov., 2009, 6, 56-62.
    • (2009) Lett. Drug Des. Discov. , vol.6 , pp. 56-62
    • Sechi, M.1    Derudas, M.2    Dallocchio, R.3    Dessì, A.4    Cosseddu, A.5    Paglietti, G.6
  • 8
    • 0037157153 scopus 로고    scopus 로고
    • Computational drug design accommodating receptor flexibility: The relaxed complex scheme
    • DOI 10.1021/ja0260162
    • Lin, J.-H.; Perryman, A. L.; Shames, J. R.; McCammon, J. A. Computational drug design accomodating receptor flexibility: the relaxed complex scheme. J. Am. Chem. Soc., 2002, 124, 5632-5633. (Pubitemid 34533490)
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.20 , pp. 5632-5633
    • Lin, J.-H.1    Perryman, A.L.2    Schames, J.R.3    McCammon, J.A.4
  • 9
    • 0037231646 scopus 로고    scopus 로고
    • The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme
    • DOI 10.1002/bip.10218
    • Lin, J-H.; Perryman, A. L.; Shames, J. R.; McCammon, J. A. The relaxed complex method: accomodating receptor flexibility for drug design with an improved scoring scheme. Biopolymers, 2003, 68, 47-62. (Pubitemid 36098307)
    • (2003) Biopolymers , vol.68 , Issue.1 , pp. 47-62
    • Lin, J.-H.1    Perryman, A.L.2    Schames, J.R.3    McCammon, J.A.4
  • 10
    • 29144478787 scopus 로고    scopus 로고
    • Target flexibility in molecular recognition
    • DOI 10.1016/j.bbapap.2005.07.041, PII S157096390500302X
    • McCammon, J.A. Target flexibility in molecular recognition. Biochim. Biophys. Acta, 2005, 1754, 221-224. (Pubitemid 41797701)
    • (2005) Biochimica et Biophysica Acta - Proteins and Proteomics , vol.1754 , Issue.1-2 , pp. 221-224
    • McCammon, J.A.1
  • 11
    • 0029633186 scopus 로고
    • AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules
    • Pearlman, D. A.; Case, D. A.; Caldwell, J. W.; Ross, W. S.; Cheatham, T. E., III; Debolt, S.; Ferguson, D. M.; Seibel, G. L.; Kollman, P. A. AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules. Comput. Phys. Commun., 1995, 91, 1-41.
    • (1995) Comput. Phys. Commun. , vol.91 , pp. 1-41
    • Pearlman, D.A.1    Case, D.A.2    Caldwell, J.W.3    Ross, W.S.4    Cheatham III, T.E.5    Debolt, S.6    Ferguson, D.M.7    Seibel, G.L.8    Kollman, P.A.9
  • 12
    • 33745208566 scopus 로고    scopus 로고
    • La Jolla, CA, USA: The Scripps Research Institute
    • Huey, R.; Morris, G. M. AutoDock Tools. La Jolla, CA, USA: The Scripps Research Institute, 2003.
    • (2003) AutoDock Tools
    • Huey, R.1    Morris, G.M.2
  • 13
    • 0030203710 scopus 로고    scopus 로고
    • Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4
    • Morris, G.M.; Goodsell, D. S.; Huey, R.; Olson, A. Distributed automated docking of flexible ligands to proteins: Parallel application of AutoDock 2.4*. J. Comp.-Aid. Mol. Des., 1996, 10, 293-304. (Pubitemid 126712824)
    • (1996) Journal of Computer-Aided Molecular Design , vol.10 , Issue.4 , pp. 293-304
    • Morris, G.M.1    Goodsell, D.S.2    Huey, R.3    Olson, A.J.4
  • 14
    • 85016334550 scopus 로고
    • On demonstrating DNA intercalation
    • Long, E. C.; Barton, J. K. On demonstrating DNA intercalation. Acc. Chem. Res., 1990, 23, 273-279.
    • (1990) Acc. Chem. Res. , vol.23 , pp. 273-279
    • Long, E.C.1    Barton, J.K.2
  • 15
    • 0029026601 scopus 로고
    • Criteria for the binding of DNA binding mode
    • Suh, D.; Chaires, J. B. Criteria for the binding of DNA binding mode. Bioorg. Med. Chem., 1995, 3, 723-728.
    • (1995) Bioorg. Med. Chem. , vol.3 , pp. 723-728
    • Suh, D.1    Chaires, J.B.2
  • 16
    • 0003633932 scopus 로고    scopus 로고
    • Tripos Inc., St. Louis, MO
    • SYBYL, version 6.3; Tripos Inc., St. Louis, MO., 2001.
    • (2001) SYBYL, Version 6.3
  • 18
    • 49149147973 scopus 로고
    • Iterative partial equilization of orbital electronegativity - A rapid access to atomic charges
    • Gasteiger, J.; Marsili, M. Iterative partial equilization of orbital electronegativity - a rapid access to atomic charges. Tetrahedron, 1980, 36, 3219-3228.
    • (1980) Tetrahedron , vol.36 , pp. 3219-3228
    • Gasteiger, J.1    Marsili, M.2
  • 20
    • 5444273677 scopus 로고    scopus 로고
    • Chlorobenzylidine-calf thymus DNA interaction II: Circular dichroism and nuclear magnetic resonance studies
    • Zhong, W.; Yu, J-S.; Liang, Y.; Fan, K.; Lai, L. Chlorobenzylidine-calf thymus DNA interaction II: circular dichroism and nuclear magnetic resonance studies. Spectrochim. Acta Part A., 2004, 60, 2985-2992.
    • (2004) Spectrochim. Acta Part A , vol.60 , pp. 2985-2992
    • Zhong, W.1    Yu, J.-S.2    Liang, Y.3    Fan, K.4    Lai, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.