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Volumn 75, Issue 11, 2009, Pages 3823-3825

First gene cassettes of integrons as targets in finding adaptive genes in metagenomes

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION RESPONSE; INTEGRONS; METAGENOMES; METAGENOMIC LIBRARIES; RAPID METHOD;

EID: 66249140933     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02394-08     Document Type: Article
Times cited : (14)

References (29)
  • 2
    • 34347364443 scopus 로고    scopus 로고
    • Integrons: Mobilizable platforms that promote genetic diversity in bacteria
    • DOI 10.1016/j.tim.2007.05.004, PII S0966842X07001023
    • Boucher, Y., M. Labbate, J. E. Koenig, and H. W. Stokes. 2007. Integrons: mobilizable platforms that promote genetic diversity in bacteria. Trends Microbiol. 15:301-309. (Pubitemid 47017712)
    • (2007) Trends in Microbiology , vol.15 , Issue.7 , pp. 301-309
    • Boucher, Y.1    Labbate, M.2    Koenig, J.E.3    Stokes, H.W.4
  • 3
    • 13444305296 scopus 로고    scopus 로고
    • The ProDom database of protein domain families: More emphasis on 3D
    • DOI 10.1093/nar/gki034
    • Bru, C., E. Courcelle, S. Carrere, Y. Beausse, S. Dalmar, and D. Kahn. 2005. The ProDom database of protein domain families: more emphasis on 3D. Nucleic Acids Res. 33:D212-D215. (Pubitemid 40207862)
    • (2005) Nucleic Acids Research , vol.33 , Issue.DATABASE ISS
    • Bru, C.1    Courcelle, E.2    Carrere, S.3    Beausse, Y.4    Dalmar, S.5    Kahn, D.6
  • 4
    • 0028835869 scopus 로고
    • Expression of antibiotic resistance genes in the integrated cassettes of integrons
    • Collis, C. M., and R. M. Hall. 1995. Expression of antibiotic resistance genes in the integrated cassettes of integrons. Antimicrob. Agents Chemother. 39:155-162.
    • (1995) Antimicrob. Agents Chemother. , vol.39 , pp. 155-162
    • Collis, C.M.1    Hall, R.M.2
  • 5
    • 0031850574 scopus 로고    scopus 로고
    • Binding of the purified integron DNA integrase Intl1 to integron- And cassette-associated recombination sites
    • Collis, C. M., M. J. Kim, H. W. Stokes, and R. M. Hall. 1998. Binding of the purified integron DNA integrase Intl1 to integron- and cassette-associated recombination sites. Mol. Microbiol. 29:477-490.
    • (1998) Mol. Microbiol. , vol.29 , pp. 477-490
    • Collis, C.M.1    Kim, M.J.2    Stokes, H.W.3    Hall, R.M.4
  • 6
    • 0036886073 scopus 로고    scopus 로고
    • Integron-encoded IntI integrases preferentially recognize the adjacent cognate attI site in recombination with a 59-be site
    • Collis, C. M., M. J. Kim, H. W. Stokes, and R. M. Hall. 2002. Integron-encoded IntI integrases preferentially recognize the adjacent cognate attI site in recombination with a 59-be site. Mol. Microbiol. 46:1415-1427.
    • (2002) Mol. Microbiol. , vol.46 , pp. 1415-1427
    • Collis, C.M.1    Kim, M.J.2    Stokes, H.W.3    Hall, R.M.4
  • 7
    • 0035091147 scopus 로고    scopus 로고
    • Efficiency of recombination reactions catalyzed by class 1 integron integrase IntI1
    • DOI 10.1128/JB.183.8.2535-2542.2001
    • Collis, C. M., G. D. Recchia, M. J. Kim, H. W. Stokes, and R. M. Hall. 2001. Efficiency of recombination reactions catalyzed by class 1 integron integrase intI1. J. Bacteriol. 183:2535-2542. (Pubitemid 32249762)
    • (2001) Journal of Bacteriology , vol.183 , Issue.8 , pp. 2535-2542
    • Collis, C.M.1    Recchia, G.D.2    Kim, M.-J.3    Stokes, H.W.4    Hall, R.M.5
  • 8
    • 36148954712 scopus 로고    scopus 로고
    • Identification of key structural determinants of the IntI1 integron integrase that influence attC x attI1 recombination efficiency
    • Demarre, G., C. Frumerie, D. N. Gopaul, and D. Mazel. 2007. Identification of key structural determinants of the IntI1 integron integrase that influence attC x attI1 recombination efficiency. Nucleic Acids Res. 35:6475-6489.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 6475-6489
    • Demarre, G.1    Frumerie, C.2    Gopaul, D.N.3    Mazel, D.4
  • 9
    • 34547665122 scopus 로고    scopus 로고
    • Novel and diverse integron integrase genes and integron-like gene cassettes are prevalent in deep-sea hydrothermal vents
    • Elsaied, H., H. W. Stokes, T. Nakamura, K. Kitamura, H. Fuse, and A. Maruyama. 2007. Novel and diverse integron integrase genes and integron-like gene cassettes are prevalent in deep-sea hydrothermal vents. Environ. Microbiol. 9:2298-2312.
    • (2007) Environ. Microbiol. , vol.9 , pp. 2298-2312
    • Elsaied, H.1    Stokes, H.W.2    Nakamura, T.3    Kitamura, K.4    Fuse, H.5    Maruyama, A.6
  • 11
    • 50949097622 scopus 로고    scopus 로고
    • Recovery of diverse genes for class 1 integron-integrases from environmental DNA samples
    • Gillings, M. R., S. Krishnan, P. J. Worden, and S. A. Hardwick. 2008. Recovery of diverse genes for class 1 integron-integrases from environmental DNA samples. FEMS Microbiol. Lett. 287:56-62.
    • (2008) FEMS Microbiol. Lett. , vol.287 , pp. 56-62
    • Gillings, M.R.1    Krishnan, S.2    Worden, P.J.3    Hardwick, S.A.4
  • 12
    • 0036148363 scopus 로고    scopus 로고
    • Type II topoisomerase quinolone resistance-determining regions of Aeromonas caviae, A. hydrophila, and A. sobria complexes and mutations associated with quinolone resistance
    • Goñi-Urriza, M., C. Arpin, M. Capdepuy, V. Dubois, P. Caumette, and C. Quentin. 2002. Type II topoisomerase quinolone resistance-determining regions of Aeromonas caviae, A. hydrophila, and A. sobria complexes and mutations associated with quinolone resistance. Antimicrob. Agents Chemother. 46:350-359.
    • (2002) Antimicrob. Agents Chemother. , vol.46 , pp. 350-359
    • Goñi-Urriza, M.1    Arpin, C.2    Capdepuy, M.3    Dubois, V.4    Caumette, P.5    Quentin, C.6
  • 13
    • 0030628242 scopus 로고    scopus 로고
    • Mobile gene cassettes and integrons: Moving antibiotic resistance genes in gram-negative bacteria
    • discussion, 202-205
    • Hall, R. M. 1997. Mobile gene cassettes and integrons: moving antibiotic resistance genes in gram-negative bacteria. Ciba Found. Symp. 207:192-202; discussion, 202-205.
    • (1997) Ciba Found. Symp. , vol.207 , pp. 192-202
    • Hall, R.M.1
  • 18
    • 33646337441 scopus 로고    scopus 로고
    • Structural basis for broad DNA-specificity in integron recombination
    • MacDonald, D., G. Demarre, M. Bouvier, D. Mazel, and D. N. Gopaul. 2006. Structural basis for broad DNA-specificity in integron recombination. Nature 440:1157-1162.
    • (2006) Nature , vol.440 , pp. 1157-1162
    • MacDonald, D.1    Demarre, G.2    Bouvier, M.3    Mazel, D.4    Gopaul, D.N.5
  • 19
    • 0032562596 scopus 로고    scopus 로고
    • A distinctive class of integron in the Vibrio cholerae genome
    • Mazel, D., B. Dychinco, V. A. Webb, and J. Davies. 1998. A distinctive class of integron in the Vibrio cholerae genome. Science 280:605-608.
    • (1998) Science , vol.280 , pp. 605-608
    • Mazel, D.1    Dychinco, B.2    Webb, V.A.3    Davies, J.4
  • 21
    • 2342633148 scopus 로고    scopus 로고
    • Integron diversity in heavy-metal-contaminated mine tailings and inferences about integron evolution
    • Nemergut, D. R., A. P. Martin, and S. K. Schmidt. 2004. Integron diversity in heavy-metal-contaminated mine tailings and inferences about integron evolution. Appl. Environ. Microbiol. 70:1160-1168.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1160-1168
    • Nemergut, D.R.1    Martin, A.P.2    Schmidt, S.K.3
  • 24
    • 0035899963 scopus 로고    scopus 로고
    • Rapid and specific identification of nitrile hydratase (NHase)-encoding genes in soil samples by polymerase chain reaction
    • Precigou, S., P. Goulas, and R. Duran. 2001. Rapid and specific identification of nitrile hydratase (NHase)-encoding genes in soil samples by polymerase chain reaction. FEMS Microbiol. Lett. 204:155-161.
    • (2001) FEMS Microbiol. Lett. , vol.204 , pp. 155-161
    • Precigou, S.1    Goulas, P.2    Duran, R.3
  • 25
    • 0032854171 scopus 로고    scopus 로고
    • Identification and characterization of class 1 integrons in bacteria from an aquatic environment
    • Rosser, S. J., and H. K. Young. 1999. Identification and characterization of class 1 integrons in bacteria from an aquatic environment. J. Antimicrob. Chemother. 44:11-18.
    • (1999) J. Antimicrob. Chemother. , vol.44 , pp. 11-18
    • Rosser, S.J.1    Young, H.K.2
  • 26
    • 0024805974 scopus 로고
    • A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: Integrons
    • Stokes, H. W., and R. M. Hall. 1989. A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: integrons. Mol. Microbiol. 3:1669-1683.
    • (1989) Mol. Microbiol. , vol.3 , pp. 1669-1683
    • Stokes, H.W.1    Hall, R.M.2
  • 29
    • 42049087610 scopus 로고    scopus 로고
    • Influence of industrial contamination on mobile genetic elements: Class 1 integron abundance and gene cassette structure in aquatic bacterial communities
    • Wright, M. S., C. Baker-Austin, A. H. Lindell, R. Stepanauskas, H. W. Stokes, and J. V. McArthur. 2008. Influence of industrial contamination on mobile genetic elements: class 1 integron abundance and gene cassette structure in aquatic bacterial communities. ISME J. 2:417-428.
    • (2008) ISME J. , vol.2 , pp. 417-428
    • Wright, M.S.1    Baker-Austin, C.2    Lindell, A.H.3    Stepanauskas, R.4    Stokes, H.W.5    McArthur, J.V.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.