Methanolobus profundi sp. nov., a methylotrophic methanogen isolated from deep subsurface sediments in a natural gas field

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 4, 2009, Pages 714-718

  Michimaru, Hanako ^a   Tamaki, Hideyuki ^a   Hanada, Satoshi ^a   Imachi, Hiroyuki ^b   Nakamura, Kohei ^a,c   Sakata, Susumu ^a   Kamagata, Yoichi ^a,d  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^b JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^c GIFU UNIVERSITY   (Japan)

^d NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; AMPICILLIN; CARBON DIOXIDE; DIMETHYL SULFIDE; FORMIC ACID; GENOMIC DNA; HYDROGEN; KANAMYCIN; MAGNESIUM; METHANOL; METHYLAMINE; NATURAL GAS; PENICILLIN G; RNA 16S; SODIUM; TETRACYCLINE; VANCOMYCIN; BACTERIAL DNA; METHANE; RIBOSOME DNA;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA CONTENT; GENUS; JAPAN; MESOPHILIC BACTERIUM; METHANOGEN; METHANOLOBUS; METHANOLOBUS PROFUNDI; METHANOLOBUS TINDARIUS; METHANOLOBUS VULCANI; METHYLOTROPHIC BACTERIUM; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEDIMENT; SEQUENCE HOMOLOGY; TEMPERATURE; TYPE STRAIN; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; METHANOSARCINA; MICROBIOLOGY; MOLECULAR GENETICS;

METHANOLOBUS; METHANOLOBUS TINDARIUS; METHANOLOBUS VULCANI;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; GEOLOGIC SEDIMENTS; JAPAN; MAGNESIUM; METHANE; METHANOL; METHANOSARCINACEAE; METHYLAMINES; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM;

EID: 66149094323     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.001677-0     Document Type: Article

References (19)

1. Boone, D. R. & Whitman, W. B. (1988). Proposal of minimal standards for describing new taxa of methanogenic bacteria. Int J Syst Bacteriol 38, 212-219.
2. Boone, D. R., Whitman, W. B. & Koga, Y. (2001). Order III. Methanosarcinales ord. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 268-294. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
3. Igari, S. I. & Sakata, S. (1989). Origin of natural gas of dissolved-in-water type in Japan inferred from chemical and isotopic compositions: occurrence of dissolved gas of thermogenic origin. Geochem J 23, 139-142.
4. Kadam, P. C. & Boone, D. R. (1995). Physiological characterization and emended description of Methanolobus vulcani. Int J Syst Bacteriol 45, 400-402.
5. Kadam, P. C., Ranade, D. R., Mandelco, L. & Boone, D. R. (1994). Isolation and characterization of Methanolobus bombayensis sp. nov., a methylotrophic methanogen that requires high concentrations of divalent cations. Int J Syst Bacteriol 44, 603-607.
6. Kamagata, Y. & Mikami, E. (1991). Isolation and characterization of a novel thermophilic Methanosaeta strain. Int J Syst Bacteriol 41, 191-196.
7. Kamagata, Y., Fulthorpe, R. R., Tamura, K., Takami, H., Forney, L. J. & Tiedje, J. M. (1997). Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria. Appl Environ Microbiol 63, 2266-2272.
8. Konig, H. & Stetter, K. O. (1982). Isolation and characterization of Methanolobus tindarius, sp. nov., a coccoid methanogen growing only on methanol and methylamines. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt 1 Orig C3, 478-490.
9. Kunisue, S., Mita, I. & Waki, F. (2002). Relationship between subsurface geology and productivity of natural gas and iodine in the Mobara gas field, Boso Peninsula, central Japan. J Jpn Assoc Pet Tech 67, 83-96.
10. Liu, Y., Boone, D. R. & Choy, C. (1990). Methanohalophilus oregonense sp. nov., a methylotrophic methanogen from an alkaline, saline aquifer. Int J Syst Bacteriol 40, 111-116.
11. Mochimaru, H., Uchiyama, H., Yoshioka, H., Imachi, H., Hoaki, T., Tamaki, H., Nakamura, K., Sekiguchi, Y. & Kamagata, Y. (2007). Methanogen diversity in deep subsurface gas-associated water at the Minami-Kanto gas field in Japan. Geomicrobiol J 24, 93-100.
12. Nakamura, K., Terada, T., Sekiguchi, Y., Shinzato, N., Meng, X. Y., Enoki, M. & Kamagata, Y. (2006). Application of pseudomurein endoisopeptidase to fluorescence in situ hybridization of methanogens within the family Methanobacteriaceae. Appl Environ Microbiol 72, 6907-6913.
13. Oremland, R. S. & Boone, D. R. (1994). Methanolobus taylorii sp. nov., a new methylotrophic, estuarine methanogen. Int J Syst Bacteriol 44, 573-575.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Sekiguchi, Y., Kamagata, Y., Nakamura, K., Ohashi, A. & Harada, H. (2000). Syntrophothermus lipocalidus gen. nov., sp. nov., a novel thermophilic, syntrophic, fatty-acid-oxidizing anaerobe which utilizes isobutyrate. Int J Syst Evol Microbiol 50, 771-779.
16. Sudo, Y. (1967). Geochemical study of brine from oil and gas fields in Japan. J Jpn Assoc Pet Technol (Tokyo) 32, 286-296.
17. Swofford, D. L. (2003). PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4. Sunderland, MA: Sinauer Associates.
18. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
19. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.