Violation of the single-parameter scaling hypothesis in human chromosome 22 with charge transfer models

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 79, Issue 4, 2009, Pages

  Guo, Ai Min ^a   Xiong, Shi Jie ^a  

^a NANJING UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BASE-PAIRING; CENTRAL MOMENTS; CHARGE TRANSFER MODEL; HUMAN CHROMOSOMES; HURST EXPONENTS; LOCALIZATION PROPERTIES; LONG RANGE CORRELATIONS; LYAPUNOV EXPONENT; PARAMETER SCALING; SATELLITE DNA; SCALING PARAMETER; STATISTICAL QUANTITY; TRANSFER MATRIXES;

CHARGE TRANSFER; DIFFERENTIAL EQUATIONS; DNA; GENES; ION EXCHANGE; MASS TRANSFER; NUCLEIC ACIDS; TRANSPORT PROPERTIES; WAVE FUNCTIONS;

DNA SEQUENCES;

EID: 66049137665     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.79.041924     Document Type: Article

References (42)

1. C. K. Peng, S. V. Buldyrev, A. L. Goldberger, S. Havlin, F. Sciortino, M. Simons, and H. E. Stanley, Nature (London) 356, 168 (1992). 10.1038/356168a0
2. R. F. Voss, Phys. Rev. Lett. 68, 3805 (1992). 10.1103/PhysRevLett.68.3805
3. W. Li and K. Kaneko, Europhys. Lett. 17, 655 (1992). 10.1209/0295-5075/ 17/7/014
4. P. Bernaola-GalvÃn, P. Carpena, R. RomÃn-RoldÃn, and J. L. Oliver, Gene 300, 105 (2002). 10.1016/S0378-1119(02)01037-5
5. W. Li and D. Holste, Phys. Rev. E 71, 041910 (2005). 10.1103/PhysRevE.71. 041910
6. A. Arneodo, E. Bacry, P. V. Graves, and J. F. Muzy, Phys. Rev. Lett. 74, 3293 (1995). 10.1103/PhysRevLett.74.3293
7. B. Audit, C. Vaillant, A. Arneodo, Y. dâAubenton-Carafa, and C. Thermes, J. Mol. Biol. 316, 903 (2002). 10.1006/jmbi.2001.5363
8. S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N. Mantegna, M. E. Matsa, C. K. Peng, M. Simons, and H. E. Stanley, Phys. Rev. E 51, 5084 (1995). 10.1103/PhysRevE.51.5084
9. P. Carpena, P. Bernaola-GalvÃn, A. V. Coronado, M. Hackenberg, and J. L. Oliver, Phys. Rev. E 75, 032903 (2007). 10.1103/PhysRevE.75.032903
10. P. Bernaola-GalvÃn, I. Grosse, P. Carpena, J. L. Oliver, R. RomÃn-RoldÃn, and H. E. Stanley, Phys. Rev. Lett. 85, 1342 (2000). 10.1103/PhysRevLett.85.1342
11. D. Holste, I. Grosse, and H. Herzel, Phys. Rev. E 64, 041917 (2001). 10.1103/PhysRevE.64.041917
12. C. Vaillant, B. Audit, and A. Arneodo, Phys. Rev. Lett. 99, 218103 (2007). 10.1103/PhysRevLett.99.218103
13. P. Carpena, P. Bernaola-GalvÃn, P. Ch. Ivanov, and H. E. Stanley, Nature (London) 418, 955 (2002). 10.1038/nature00948
14. S. Roche, D. Bicout, E. MaciÃ, and E. Kats, Phys. Rev. Lett. 91, 228101 (2003). 10.1103/PhysRevLett.91.228101
15. E. L. Albuquerque, M. S. Vasconcelos, M. L. Lyra, and F. A. B. F. de Moura, Phys. Rev. E 71, 021910 (2005). 10.1103/PhysRevE.71.021910
16. A. M. Guo, Phys. Rev. E 75, 061915 (2007). 10.1103/PhysRevE.75.061915
17. C. T. Shih, S. Roche, and R. A. RÃmer, Phys. Rev. Lett. 100, 018105 (2008). 10.1103/PhysRevLett.100.018105
18. Y. A. Berlin, A. L. Burin, and M. A. Ratner, Chem. Phys. 275, 61 (2002). 10.1016/S0301-0104(01)00536-5
19. P. W. Anderson, D. J. Thouless, E. Abrahams, and D. S. Fisher, Phys. Rev. B 22, 3519 (1980). 10.1103/PhysRevB.22.3519
20. L. I. Deych, A. A. Lisyansky, and B. L. Altshuler, Phys. Rev. B 64, 224202 (2001). 10.1103/PhysRevB.64.224202
21. K. Slevin, Y. Asada, and L. I. Deych, Phys. Rev. B 70, 054201 (2004). 10.1103/PhysRevB.70.054201
22. Y. Y. Zhang and S. J. Xiong, Phys. Rev. B 72, 132202 (2005). 10.1103/PhysRevB.72.132202
23. H. Schomerus and M. Titov, Phys. Rev. B 67, 100201 (R) (2003). 10.1103/PhysRevB.67.100201
24. L. I. Deych, M. V. Erementchouk, A. A. Lisyansky, and B. L. Altshuler, Phys. Rev. Lett. 91, 096601 (2003). 10.1103/PhysRevLett.91.096601
25. The sequence is retrieved from the National Center for Biotechnology Information (NCBI) build 36.2 human genome assembly. The human chromosome 22 contains about 3.49 × 107 nucleotides, the largest segment NT011520 about 2.33 × 107 nucleotides, and the second largest segment about 4.25 × 106 nucleotides.
26. B. Audit, C. Thermes, C. Vaillant, Y. dâAubenton-Carafa, J. F. Muzy, and A. Arneodo, Phys. Rev. Lett. 86, 2471 (2001). 10.1103/PhysRevLett.86. 2471
27. G. M. Viswanathan, S. V. Buldyrev, S. Havlin, and H. E. Stanley, Biophys. J. 72, 866 (1997). 10.1016/S0006-3495(97)78721-6
28. A. V. Coronado and P. Carpena, J. Biol. Phys. 31, 121 (2005). 10.1007/s10867-005-3126-8
29. H. Sugiyama and I. Saito, J. Am. Chem. Soc. 118, 7063 (1996). 10.1021/ja9609821
30. A. A. Voityuk, J. Jortner, M. Bixon, and N. RÃsch, J. Chem. Phys. 114, 5614 (2001). 10.1063/1.1352035
31. Y. J. Yan and H. Y. Zhang, J. Theor. Comput. Chem. 1, 225 (2002). 10.1142/S0219633602000154
32. K. Iguchi, Int. J. Mod. Phys. B 11, 2405 (1997). 10.1142/ S0217979297001222
33. A. Sedrakyan and F. Domãnguez-Adame, Phys. Rev. Lett. 96, 059703 (2006). 10.1103/PhysRevLett.96.059703
34. X. F. Wang and T. Chakraborty, Phys. Rev. Lett. 97, 106602 (2006). 10.1103/PhysRevLett.97.106602
35. R. GutiÃrrez, S. Mohapatra, H. Cohen, D. Porath, and G. Cuniberti, Phys. Rev. B 74, 235105 (2006). 10.1103/PhysRevB.74.235105
36. E. MaciÃ, Phys. Rev. B 75, 035130 (2007). 10.1103/PhysRevB.75. 035130
37. A. V. Malyshev, Phys. Rev. Lett. 98, 096801 (2007). 10.1103/PhysRevLett. 98.096801
38. V. M. K. Bagci and A. A. Krokhin, Phys. Rev. B 76, 134202 (2007). 10.1103/PhysRevB.76.134202
39. A. M. Guo and S. J. Xiong, Phys. Lett. A 372, 3259 (2008). 10.1016/j.physleta.2008.01.075
40. A. MacKinnon and B. Kramer, Z. Phys. B: Condens. Matter 53, 1 (1983). 10.1007/BF01578242
41. D. Porath, A. Bezryadin, S. de Vries, and C. Dekker, Nature (London) 403, 635 (2000). 10.1038/35001029
42. H. Cohen, C. Nogues, R. Naaman, and D. Porath, Proc. Natl. Acad. Sci. U.S.A. 102, 11589 (2005). 10.1073/pnas.0505272102