메뉴 건너뛰기




Volumn 13, Issue 7, 2003, Pages 1737-1743

A rapid method of genomic array analysis of scaffold/matrix attachment regions (S/MARs) identifies a 2.5-Mb region of enhanced scaffold/matrix attachment at a human neocentromere

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME PROTEIN;

EID: 0037810434     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.1095903     Document Type: Article
Times cited : (18)

References (41)
  • 1
    • 0024295412 scopus 로고
    • Chromosomal ARS and CEN elements bind specifically to the yeast nuclear scaffold
    • Amati, B.B. and Gasser, S.M. 1988. Chromosomal ARS and CEN elements bind specifically to the yeast nuclear scaffold. Cell 54: 967-978.
    • (1988) Cell , vol.54 , pp. 967-978
    • Amati, B.B.1    Gasser, S.M.2
  • 2
    • 0036783383 scopus 로고    scopus 로고
    • Neocentromeres: Role in human disease, evolution, and centromere study
    • Amor, D.J. and Choo, K.H.A. 2002. Neocentromeres: Role in human disease, evolution, and centromere study. Am. J. Hum. Genet. 71: 695-714.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 695-714
    • Amor, D.J.1    Choo, K.H.A.2
  • 3
    • 0036021789 scopus 로고    scopus 로고
    • Active, but not inactive, human centromeres display topoisomerase II activity in vivo
    • Andersen, C.L., Wandall, A., Kjeldsen, E., Mielke, C., and Koch, J. 2002. Active, but not inactive, human centromeres display topoisomerase II activity in vivo. Chromosome Res. 10: 305-312.
    • (2002) Chromosome Res. , vol.10 , pp. 305-312
    • Andersen, C.L.1    Wandall, A.2    Kjeldsen, E.3    Mielke, C.4    Koch, J.5
  • 5
    • 0030053911 scopus 로고    scopus 로고
    • Visualizing the spatial relationships between defined DNA sequences and the axial region of extracted metaphase chromosomes
    • Bickmore, W.A. and Oghene, K. 1996. Visualizing the spatial relationships between defined DNA sequences and the axial region of extracted metaphase chromosomes. Cell 84: 95-104.
    • (1996) Cell , vol.84 , pp. 95-104
    • Bickmore, W.A.1    Oghene, K.2
  • 7
    • 0004002022 scopus 로고    scopus 로고
    • The centromere
    • Oxford University Press, Oxford, UK
    • Choo, K.H.A. 1997. The centromere. Oxford University Press, Oxford, UK.
    • (1997)
    • Choo, K.H.A.1
  • 8
    • 0034193773 scopus 로고    scopus 로고
    • Centromerization
    • Choo, K.H.A. 2000. Centromerization. Trends Cell. Biol. 10: 182-188.
    • (2000) Trends Cell. Biol. , vol.10 , pp. 182-188
    • Choo, K.H.A.1
  • 9
    • 0035431654 scopus 로고    scopus 로고
    • Domain organization at the centromere and neocentromere
    • Choo, K.H.A. 2001. Domain organization at the centromere and neocentromere. Dev. Cell 1: 165-177.
    • (2001) Dev. Cell , vol.1 , pp. 165-177
    • Choo, K.H.A.1
  • 10
    • 0002414136 scopus 로고    scopus 로고
    • Isolation of vertebrate metaphase chromosomes and their analysis by FISH
    • (ed. W.A. Bickmore), Oxford University Press, Oxford, UK
    • Craig, J.M. 1999. Isolation of vertebrate metaphase chromosomes and their analysis by FISH. In Chromosome structural analysis: A practical approach (ed. W.A. Bickmore), pp. 59-80. Oxford University Press, Oxford, UK.
    • (1999) Chromosome Structural Analysis: A Practical Approach , pp. 59-80
    • Craig, J.M.1
  • 11
    • 0030664669 scopus 로고    scopus 로고
    • Scaffold attachments within the human genome
    • Craig, J.M., Boyle, S., Perry, P., and Bickmore, W.A. 1997. Scaffold attachments within the human genome. J. Cell. Sci. 110: 2673-2682.
    • (1997) J. Cell. Sci. , vol.110 , pp. 2673-2682
    • Craig, J.M.1    Boyle, S.2    Perry, P.3    Bickmore, W.A.4
  • 13
    • 0021331589 scopus 로고
    • The kinetochore is part of the metaphase chromosome scaffold
    • Earnshaw, W.C., Halligan, N., Cooke, C., and Rothfield, N. 1984. The kinetochore is part of the metaphase chromosome scaffold. J. Cell. Biol. 98: 352-357.
    • (1984) J. Cell. Biol. , vol.98 , pp. 352-357
    • Earnshaw, W.C.1    Halligan, N.2    Cooke, C.3    Rothfield, N.4
  • 14
    • 0021958085 scopus 로고
    • Topoisomerase II is a structural component of mitotic chromosome scaffolds
    • Earnshaw, W.C., Halligan, B., Cooke, C.A., Heck, M.M., and Liu, L.F. 1985. Topoisomerase II is a structural component of mitotic chromosome scaffolds. J. Cell. Biol. 100: 1706-1715.
    • (1985) J. Cell. Biol. , vol.100 , pp. 1706-1715
    • Earnshaw, W.C.1    Halligan, B.2    Cooke, C.A.3    Heck, M.M.4    Liu, L.F.5
  • 15
    • 0036180490 scopus 로고    scopus 로고
    • In silico prediction of scaffold/matrix attachment regions in large genomic sequences
    • Frisch, M., Frech, K., Klingenhoff, A., Cartharius, K., Liebich, I., and Werner, T. 2002. In silico prediction of scaffold/matrix attachment regions in large genomic sequences. Genome Res. 12: 349-354.
    • (2002) Genome Res. , vol.12 , pp. 349-354
    • Frisch, M.1    Frech, K.2    Klingenhoff, A.3    Cartharius, K.4    Liebich, I.5    Werner, T.6
  • 16
    • 0033575278 scopus 로고    scopus 로고
    • Poly(ADP-ribose) polymerase and Ku autoantigen form a complex and synergistically bind to matrix attachment sequences
    • Galande, S. and Kohwi-Shigematsu, T. 1999. Poly(ADP-ribose) polymerase and Ku autoantigen form a complex and synergistically bind to matrix attachment sequences. J. Biol. Chem. 274: 20521-20528.
    • (1999) J. Biol. Chem. , vol.274 , pp. 20521-20528
    • Galande, S.1    Kohwi-Shigematsu, T.2
  • 17
    • 0035895841 scopus 로고    scopus 로고
    • Comparative study and prediction of DNA fragments associated with various elements of the nuclear matrix
    • 1517
    • Glazko, G.V., Rogozin, I.B., and Glazkov, M.V. 2001. Comparative study and prediction of DNA fragments associated with various elements of the nuclear matrix. Biochim. Biophys. Acta 1517: 351-364.
    • (2001) Biochim. Biophys. Acta , pp. 351-364
    • Glazko, G.V.1    Rogozin, I.B.2    Glazkov, M.V.3
  • 18
    • 0030910465 scopus 로고    scopus 로고
    • Formation of de novo centromeres and construction of first-generation human artificial microchromosomes
    • Harrington, J.J., Van Bokkelen, G., Mays, R.W., Gustashaw, K., and Willard, H.F. 1997. Formation of de novo centromeres and construction of first-generation human artificial microchromosomes. Nat. Genet. 15: 345-355.
    • (1997) Nat. Genet. , vol.15 , pp. 345-355
    • Harrington, J.J.1    Van Bokkelen, G.2    Mays, R.W.3    Gustashaw, K.4    Willard, H.F.5
  • 19
    • 0031878686 scopus 로고    scopus 로고
    • CENP-G: A new centromeric protein that is associated with the α-1 satellite DNA subfamily
    • He, D., Zeng, C., Woods, K., Zhong, L., Turner, D., Busch, R.K., Brinkley, B.R., and Busch, H. 1998. CENP-G: A new centromeric protein that is associated with the α-1 satellite DNA subfamily. Chromosoma 107: 189-197.
    • (1998) Chromosoma , vol.107 , pp. 189-197
    • He, D.1    Zeng, C.2    Woods, K.3    Zhong, L.4    Turner, D.5    Busch, R.K.6    Brinkley, B.R.7    Busch, H.8
  • 20
    • 0023773201 scopus 로고
    • A gentle method for preparing cyto-and nucleo-skeletons and associated chromatin
    • Jackson, D.A., Yuan, J., and Cook, P.R. 1988. A gentle method for preparing cyto-and nucleo-skeletons and associated chromatin. J. Cell. Sci. 90: 365-378.
    • (1988) J. Cell. Sci. , vol.90 , pp. 365-378
    • Jackson, D.A.1    Yuan, J.2    Cook, P.R.3
  • 21
    • 0031437950 scopus 로고    scopus 로고
    • The case for epigenetic effects on centromere identity and function
    • Karpen, G.H. and Allshire, R.C. 1997. The case for epigenetic effects on centromere identity and function. Trends Genet. 13: 489-496.
    • (1997) Trends Genet. , vol.13 , pp. 489-496
    • Karpen, G.H.1    Allshire, R.C.2
  • 22
    • 0024820573 scopus 로고
    • Specific inhibition of DNA binding to nuclear scaffolds and histone H1 by distamycin. The role of oligo(dA).oligo(dT) tracts
    • Kas, E., Izaurralde, E., and Laemmli, U.K. 1989. Specific inhibition of DNA binding to nuclear scaffolds and histone H1 by distamycin. The role of oligo(dA).oligo(dT) tracts. J. Mol. Biol. 210: 587-599.
    • (1989) J. Mol. Biol. , vol.210 , pp. 587-599
    • Kas, E.1    Izaurralde, E.2    Laemmli, U.K.3
  • 23
    • 0020324697 scopus 로고
    • Higher order metaphase chromosome structure: Evidence for metalloprotein interactions
    • Lewis, C.D. and Laemmli, U.K. 1982. Higher order metaphase chromosome structure: Evidence for metalloprotein interactions. Cell 29: 171-181.
    • (1982) Cell , vol.29 , pp. 171-181
    • Lewis, C.D.1    Laemmli, U.K.2
  • 25
    • 0035077849 scopus 로고    scopus 로고
    • A novel chromatin immunoprecipitation and array (CIA) analysis identifies a 460-kb CENP-A-binding neocentromere DNA
    • Lo, A.W., Magliano, D.J., Sibson, M.C., Kalitsis, P., Craig, J.M., and Choo, K.H.A. 2001b. A novel chromatin immunoprecipitation and array (CIA) analysis identifies a 460-kb CENP-A-binding neocentromere DNA. Genome Res. 11: 448-457.
    • (2001) Genome Res. , vol.11 , pp. 448-457
    • Lo, A.W.1    Magliano, D.J.2    Sibson, M.C.3    Kalitsis, P.4    Craig, J.M.5    Choo, K.H.A.6
  • 26
    • 0035916338 scopus 로고    scopus 로고
    • Intermolecular DNA interactions stimulated by the cohesin complex in vitro: Implications for sister chromatid cohesion
    • Losada, A. and Hirano, T. 2001. Intermolecular DNA interactions stimulated by the cohesin complex in vitro: Implications for sister chromatid cohesion. Curr. Biol. 11: 268-272.
    • (2001) Curr. Biol. , vol.11 , pp. 268-272
    • Losada, A.1    Hirano, T.2
  • 27
    • 0021675784 scopus 로고
    • Organization of the higher-order chromatin loop: Specific DNA attachment sites on nuclear scaffold
    • Mirkovitch, J., Mirault, M.E., and Laemmli, U.K. 1984. Organization of the higher-order chromatin loop: Specific DNA attachment sites on nuclear scaffold. Cell 39: 223-232.
    • (1984) Cell , vol.39 , pp. 223-232
    • Mirkovitch, J.1    Mirault, M.E.2    Laemmli, U.K.3
  • 29
    • 0017652886 scopus 로고
    • The structure of histone-depleted metaphase chromosomes
    • Paulson, J.R. and Laemmli, U.K. 1977. The structure of histone-depleted metaphase chromosomes. Cell 12: 817-828.
    • (1977) Cell , vol.12 , pp. 817-828
    • Paulson, J.R.1    Laemmli, U.K.2
  • 31
    • 0033958663 scopus 로고    scopus 로고
    • Human centromeres and neocentromeres show identical distribution patterns of >20 functionally important kinetochore-associated proteins
    • Saffery, R., Irvine, D.V., Griffiths, B., Kalitsis, P., Wordeman, L., and Choo, K.H.A. 2000. Human centromeres and neocentromeres show identical distribution patterns of >20 functionally important kinetochore-associated proteins. Hum. Mol. Genet. 9: 175-185.
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 175-185
    • Saffery, R.1    Irvine, D.V.2    Griffiths, B.3    Kalitsis, P.4    Wordeman, L.5    Choo, K.H.A.6
  • 32
    • 0034871864 scopus 로고    scopus 로고
    • Cytogenetic analysis and construction of a BAC config across a common neocentromeric region from 9p
    • Satinover, D.L., Vance, G.H., Van Dyk, D.L., and Schwartz, S. 2001. Cytogenetic analysis and construction of a BAC config across a common neocentromeric region from 9p. Chromosoma 110: 275-283.
    • (2001) Chromosoma , vol.110 , pp. 275-283
    • Satinover, D.L.1    Vance, G.H.2    Van Dyk, D.L.3    Schwartz, S.4
  • 33
    • 0030741634 scopus 로고    scopus 로고
    • Mathematical model to predict regions of chromatin attachment to the nuclear matrix
    • Singh, G.B., Kramer, J.A., and Krawetz, S.A. 1997. Mathematical model to predict regions of chromatin attachment to the nuclear matrix. Nucleic Acids Res. 25: 1419-1425.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1419-1425
    • Singh, G.B.1    Kramer, J.A.2    Krawetz, S.A.3
  • 34
    • 0032784908 scopus 로고    scopus 로고
    • Interspersed repeats and other mementos of transposable elements in mammalian genomes
    • Smit, A.F. 1999. Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev. 9: 657-663.
    • (1999) Curr. Opin. Genet. Dev. , vol.9 , pp. 657-663
    • Smit, A.F.1
  • 35
    • 0342316480 scopus 로고    scopus 로고
    • Origin and roles of nuclear matrix proteins. Specific functions of the MAR-binding protein MeCP2/ARBP
    • Stratling, W.H. and Yu, F. 1999. Origin and roles of nuclear matrix proteins. Specific functions of the MAR-binding protein MeCP2/ARBP. Crit. Rev. Eukaryot. Gene Expr. 9: 311-318.
    • (1999) Crit. Rev. Eukaryot. Gene Expr. , vol.9 , pp. 311-318
    • Stratling, W.H.1    Yu, F.2
  • 36
    • 0029739520 scopus 로고    scopus 로고
    • Scaffold attachment regions in centromere-associated DNA
    • Strissel, P.L., Espinosa III, R., Rowley, J.D., and Swift, H. 1996. Scaffold attachment regions in centromere-associated DNA. Chromosoma 105: 122-133.
    • (1996) Chromosoma , vol.105 , pp. 122-133
    • Strissel, P.L.1    Espinosa R. III2    Rowley, J.D.3    Swift, H.4
  • 38
    • 0031081432 scopus 로고    scopus 로고
    • Untangling the role of DNA topoisomerase II in mitotic chromosome structure and function
    • Warburton, P.E. and Earnshaw, W.C. 1997. Untangling the role of DNA topoisomerase II in mitotic chromosome structure and function. BioEssays 19: 97-99.
    • (1997) BioEssays , vol.19 , pp. 97-99
    • Warburton, P.E.1    Earnshaw, W.C.2
  • 39
    • 0035793429 scopus 로고    scopus 로고
    • Analysis of sequence-dependent curvature in matrix attachment regions
    • Yamamura, J. and Nomura, K. 2001. Analysis of sequence-dependent curvature in matrix attachment regions. FEBS Lett. 489: 166-170.
    • (2001) FEBS Lett. , vol.489 , pp. 166-170
    • Yamamura, J.1    Nomura, K.2
  • 40
    • 0025782910 scopus 로고
    • CENP-E, a novel human centromere-associated protein required for progression from metaphase to anaphase
    • Yen, T.J., Compton, D.A., Wise, D., Zinkowski, R.P., Brinkley, B.R., Earnshaw, W.C., and Cleveland, D.W. 1991. CENP-E, a novel human centromere-associated protein required for progression from metaphase to anaphase. EMBO J. 10: 1245-1254.
    • (1991) EMBO J. , vol.10 , pp. 1245-1254
    • Yen, T.J.1    Compton, D.A.2    Wise, D.3    Zinkowski, R.P.4    Brinkley, B.R.5    Earnshaw, W.C.6    Cleveland, D.W.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.