Optimization and validation of multi-coloured capillary electrophoresis for genotyping of Plasmodium falciparum merozoite surface proteins (msp1 and 2)

Malaria Journal

Volumn 8, Issue 1, 2009, Pages

  Liljander, Anne ^a   Wiklund, Lisa ^a   Falk, Nicole ^b   Kweku, Margaret ^c   Mrtensson, Andreas ^a   Felger, Ingrid ^b   Färnert, Anna ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

^b SWISS TROPICAL AND PUBLIC HEALTH INSTITUTE   (Switzerland)

^c LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMODIAQUINE; ANTIMALARIAL AGENT; ARTEMETHER; ARTESUNATE; BENFLUMETOL; FLUORESCENT DYE; MEROZOITE SURFACE PROTEIN 1; MEROZOITE SURFACE PROTEIN 2; MEROZOITE SURFACE PROTEIN 2, PLASMODIUM; PARASITE ANTIGEN; PROTOZOAL DNA; PROTOZOAL PROTEIN;

ALLELE; ARTICLE; BLOOD SAMPLING; CAPILLARY ELECTROPHORESIS; CHILD; CLINICAL TRIAL; CONTROLLED STUDY; DNA SEQUENCE; GEL ELECTROPHORESIS; GENETIC ANALYSIS; GENOTYPE; GHANA; HUMAN; MALARIA FALCIPARUM; MOLECULAR EPIDEMIOLOGY; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; TANZANIA; ANIMAL; GENETICS; IMMUNOLOGY; MEROZOITE; METHODOLOGY; MOLECULAR GENETICS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SENSITIVITY AND SPECIFICITY; VALIDATION STUDY;

ANIMALS; ANTIGENS, PROTOZOAN; ANTIMALARIALS; CHILD; DNA, PROTOZOAN; ELECTROPHORESIS, CAPILLARY; GENOTYPE; HUMANS; MALARIA, FALCIPARUM; MEROZOITE SURFACE PROTEIN 1; MEROZOITES; MOLECULAR SEQUENCE DATA; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; PROTOZOAN PROTEINS; SENSITIVITY AND SPECIFICITY;

EID: 65649083389     PISSN: None     EISSN: 14752875     Source Type: Journal    
DOI: 10.1186/1475-2875-8-78     Document Type: Article

References (24)

1. Methods and techniques for clinical trials on antimalarial drug efficacy:genotyping to identify parasite populations. http://www.mmv.org/ article.php3?id-article=472
2. Genetic evidence that RI chloroquine resistance of Plasmodium falciparum is caused by recrudescence of resistant parasites. H Babiker L Ranford-Cartwright A Sultan G Satti D Walliker, Trans R Soc Trop Med Hyg 1994 88 328 331 10.1016/0035-9203(94)90103-1 7974680 (Pubitemid 24206459)
3. Random mating in a natural population of the malaria parasite Plasmodium falciparum. HA Babiker LC Ranford-Cartwright D Currie JD Charlwood P Billingsley T Teuscher D Walliker, Parasitology 1994 109 Pt 4 413 421 7800409 (Pubitemid 24327391)
4. PCR typing of field isolates of Plasmodium falciparum. H Contamin T Fandeur S Bonnefoy F Skouri F Ntoumi O Mercereau-Puijalon, J Clin Microbiol 1995 33 944 951 7790466
5. Genotypes of merozoite surface protein 2 of Plasmodium falciparum in Tanzania. I Felger A Irion S Steiger HP Beck, Trans R Soc Trop Med Hyg 1999 93 Suppl 1 3 9 10.1016/S0035-9203(99)90320-6 10450419 (Pubitemid 29123568)
6. Frequency of cross-fertilization in the human malaria parasite Plasmodium falciparum. LC Ranford-Cartwright P Balfe R Carter D Walliker, Parasitology 1993 107 Pt 1 11 18 8355994 (Pubitemid 23178171)
7. Biased distribution of msp1 and msp2 allelic variants in Plasmodium falciparum populations in Thailand. G Snounou X Zhu N Siripoon W Jarra S Thaithong KN Brown S Viriyakosol, Trans R Soc Trop Med Hyg 1999 93 369 374 10.1016/S0035-9203(99)90120-7 10674079 (Pubitemid 29405860)
8. No influence of age on infection complexity and allelic distribution in Plasmodium falciparum infections in Ndiop, a Senegalese village with seasonal, mesoendemic malaria. J Zwetyenga C Rogier A Tall D Fontenille G Snounou JF Trape O Mercereau-Puijalon, Am J Trop Med Hyg 1998 59 726 735 9840589 (Pubitemid 28524529)
9. A high resolution four-locus multiplex single nucleotide repeat (SNR) genotyping system in Bacillus anthracis. LJ Kenefic J Beaudry C Trim L Huynh S Zanecki M Matthews J Schupp M Van Ert P Keim, J Microbiol Methods 2008 73 269 272 10.1016/j.mimet.2007.11.014 18237793
10. Multiple-Locus Variable-Number Tandem-Repeats Analysis of Escherichia coli O157 using PCR multiplexing and multi-colored capillary electrophoresis. BA Lindstedt T Vardund G Kapperud, J Microbiol Methods 2004 58 213 222 10.1016/j.mimet.2004.03.016 15234519 (Pubitemid 38952699)
11. Multiple-locus variable-number tandem repeat analysis of Legionella pneumophila using multi-colored capillary electrophoresis. AJ Nederbragt A Balasingham R Sirevag H Utkilen KS Jakobsen MJ Anderson-Glenna, J Microbiol Methods 2008 73 111 117 10.1016/j.mimet.2008.02.007 18374436
12. Comparison between agarose gel electrophoresis and capillary electrophoresis for variable numbers of tandem repeat typing of Mycobacterium tuberculosis. E Yokoyama K Kishida M Uchimura S Ichinohe, J Microbiol Methods 2006 65 425 431 10.1016/j.mimet.2005.08.014 16219376 (Pubitemid 43673954)
13. Comparison of PCR-RFLP and Genescan-based genotyping for analyzing infection dynamics of Plasmodium falciparum. N Falk N Maire W Sama S Owusu-Agyei T Smith HP Beck I Felger, Am J Trop Med Hyg 2006 74 944 950 16760501
14. Plasmodium falciparum clonal population dynamics during malaria treatment. S Jafari J Le Bras O Bouchaud R Durand, J Infect Dis 2004 189 195 203 10.1086/380910 14722883 (Pubitemid 38147242)
15. Plasmodium falciparum genotype population dynamics in asymptomatic children from Senegal. S Jafari-Guemouri C Boudin N Fievet P Ndiaye P Deloron, Microbes Infect 2006 8 1663 1670 10.1016/j.micinf.2006.01.023 16730211 (Pubitemid 44144561)
16. Genotyping of Plasmodium spp. Nested PCR. G Snounou, Methods Mol Med 2002 72 103 116 12125106
17. Seasonal intermittent preventive treatment for the prevention of anaemia and malaria in ghanaian children: a randomized, placebo controlled trial. M Kweku D Liu M Adjuik F Binka M Seidu B Greenwood D Chandramohan, PLoS ONE 2008 3 e4000 19098989 10.1371/journal.pone.0004000
18. Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. MJ Brownstein JD Carpten JR Smith, Biotechniques 1996 20 1004 1006 8780871 (Pubitemid 26194853)
19. Genotyping of Plasmodium falciparum infections by PCR: a comparative multicentre study. A Farnert AP Arez HA Babiker HP Beck A Benito A Bjorkman MC Bruce DJ Conway KP Day L Henning, Trans R Soc Trop Med Hyg 2001 95 225 232 10.1016/S0035-9203(01)90175-0 11355566
20. Genotyping of Plasmodium falciparum. PCR-RFLP analysis. I Felger HP Beck, Methods Mol Med 2002 72 117 129 12125107
21. Origin of spurious multiple bands in the amplification of microsatellite sequences. D Bovo M Rugge YH Shiao, Mol Pathol 1999 52 50 51 10439841 10.1136/mp.52.1.50 (Pubitemid 29064265)
22. Sequence analysis and characterization of stutter products at the tetranucleotide repeat locus vWA. PS Walsh NJ Fildes R Reynolds, Nucleic Acids Res 1996 24 14 2807 2812 8759015 10.1093/nar/24.14.2807 (Pubitemid 26239753)
23. A Plasmodium falciparum MSA-2 gene apparently generated by intragenic recombination between the two allelic families. VM Marshall RL Coppel RK Martin AM Oduola RF Anders DJ Kemp, Mol Biochem Parasitol 1991 45 349 351 10.1016/0166-6851(91)90104-E 2038365
24. In vitro recombination during PCR of Plasmodium falciparum DNA: a potential pitfall in molecular population genetic analysis. K Tanabe N Sakihama A Farnert I Rooth A Bjorkman D Walliker L Ranford-Cartwright, Mol Biochem Parasitol 2002 122 211 216 10.1016/S0166-6851(02)00095-6 12106875