-
2
-
-
0034852978
-
West Nile virus: A reemerging global pathogen
-
Petersen LR, Roehrig JT (2001) West Nile virus: a reemerging global pathogen. Emerg Infect Dis 7: 611-614.
-
(2001)
Emerg Infect Dis
, vol.7
, pp. 611-614
-
-
Petersen, L.R.1
Roehrig, J.T.2
-
3
-
-
0034853418
-
Widespread West Nile virus activity, eastern United States, 2000
-
Marfin AA, Petersen LR, Eidson M, Miller J, Hadler J, et al. (2001) Widespread West Nile virus activity, eastern United States, 2000. Emerg Infect Dis 7: 730-735.
-
(2001)
Emerg Infect Dis
, vol.7
, pp. 730-735
-
-
Marfin, A.A.1
Petersen, L.R.2
Eidson, M.3
Miller, J.4
Hadler, J.5
-
4
-
-
0033579282
-
Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States
-
Lanciotti RS, Roehrig JT, Deubel V, Smith J, Parker M, et al. (1999) Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States. Science 286: 2333-2337.
-
(1999)
Science
, vol.286
, pp. 2333-2337
-
-
Lanciotti, R.S.1
Roehrig, J.T.2
Deubel, V.3
Smith, J.4
Parker, M.5
-
6
-
-
22944485635
-
Virology, pathology, and clinical manifestations of West Nile virus disease
-
Hayes EB, Sejvar JJ, Zaki SR, Lanciotti RS, Bode AV, et al. (2005) Virology, pathology, and clinical manifestations of West Nile virus disease. Emerg Infect Dis 11: 1174-1179.
-
(2005)
Emerg Infect Dis
, vol.11
, pp. 1174-1179
-
-
Hayes, E.B.1
Sejvar, J.J.2
Zaki, S.R.3
Lanciotti, R.S.4
Bode, A.V.5
-
7
-
-
0030915420
-
RNA virus evolution, population dynamics, and nutritional status
-
Domingo E (1997) RNA virus evolution, population dynamics, and nutritional status. Biol Trace Elem Res 56: 23-30.
-
(1997)
Biol Trace Elem Res
, vol.56
, pp. 23-30
-
-
Domingo, E.1
-
9
-
-
33847689057
-
West Nile virus isolates from India: Evidence for a distinct genetic lineage
-
Bondre VP, Jadi RS, Mishra AC, Yergolkar PN, Arankalle VA (2007) West Nile virus isolates from India: evidence for a distinct genetic lineage. J Gen Virol 88: 875-884.
-
(2007)
J Gen Virol
, vol.88
, pp. 875-884
-
-
Bondre, V.P.1
Jadi, R.S.2
Mishra, A.C.3
Yergolkar, P.N.4
Arankalle, V.A.5
-
10
-
-
43049114537
-
Comprehensive analysis of west nile virus-specific T cell responses in humans
-
Lanteri MC, Heitman JW, Owen RE, Busch T, Gefter N, et al. (2008) Comprehensive analysis of west nile virus-specific T cell responses in humans. J Infect Dis 197: 1296-1306.
-
(2008)
J Infect Dis
, vol.197
, pp. 1296-1306
-
-
Lanteri, M.C.1
Heitman, J.W.2
Owen, R.E.3
Busch, T.4
Gefter, N.5
-
11
-
-
0344736813
-
CD8+ T cells mediate recovery and immunopathology in West Nile virus encephalitis
-
Wang Y, Lobigs M, Lee E, Mullbacher A (2003) CD8+ T cells mediate recovery and immunopathology in West Nile virus encephalitis. J Virol 77: 13323-13334.
-
(2003)
J Virol
, vol.77
, pp. 13323-13334
-
-
Wang, Y.1
Lobigs, M.2
Lee, E.3
Mullbacher, A.4
-
12
-
-
1442276260
-
Major histocompatibility complex class I (MHC-I) induction by West Nile virus: Involvement of 2 signaling pathways in MHC-I up-regulation
-
Cheng Y, King NJ, Kesson AM (2004) Major histocompatibility complex class I (MHC-I) induction by West Nile virus: involvement of 2 signaling pathways in MHC-I up-regulation. J Infect Dis 189: 658-668.
-
(2004)
J Infect Dis
, vol.189
, pp. 658-668
-
-
Cheng, Y.1
King, N.J.2
Kesson, A.M.3
-
13
-
-
33646738698
-
Gamma interferon plays a crucial early antiviral role in protection against West Nile virus infection
-
Shrestha B, Wang T, Samuel MA, Whitby K, Craft J, et al. (2006) Gamma interferon plays a crucial early antiviral role in protection against West Nile virus infection. J Virol 80: 5338-5348.
-
(2006)
J Virol
, vol.80
, pp. 5338-5348
-
-
Shrestha, B.1
Wang, T.2
Samuel, M.A.3
Whitby, K.4
Craft, J.5
-
14
-
-
34447557656
-
Protective capacity and epitope specificity of CD8(+) T cells responding to lethal West Nile virus infection
-
Brien JD, Uhrlaub JL, Nikolich-Zugich J (2007) Protective capacity and epitope specificity of CD8(+) T cells responding to lethal West Nile virus infection. Eur J Immunol 37: 1855-1863.
-
(2007)
Eur J Immunol
, vol.37
, pp. 1855-1863
-
-
Brien, J.D.1
Uhrlaub, J.L.2
Nikolich-Zugich, J.3
-
15
-
-
34447580875
-
Antigen-specific cytotoxic T lymphocytes protect against lethal West Nile virus encephalitis
-
Purtha WE, Myers N, Mitaksov V, Sitati E, Connolly J, et al. (2007) Antigen-specific cytotoxic T lymphocytes protect against lethal West Nile virus encephalitis. Eur J Immunol 37: 1845-1854.
-
(2007)
Eur J Immunol
, vol.37
, pp. 1845-1854
-
-
Purtha, W.E.1
Myers, N.2
Mitaksov, V.3
Sitati, E.4
Connolly, J.5
-
16
-
-
34248397523
-
A systematic bioinformatics approach for selection of epitope-based vaccine targets
-
Khan AM, Miotto O, Heiny AT, Salmon J, Srinivasan KN, et al. (2006) A systematic bioinformatics approach for selection of epitope-based vaccine targets. Cell Immunol 244: 141-147.
-
(2006)
Cell Immunol
, vol.244
, pp. 141-147
-
-
Khan, A.M.1
Miotto, O.2
Heiny, A.T.3
Salmon, J.4
Srinivasan, K.N.5
-
17
-
-
56149120245
-
Conservation and variability of dengue virus proteins: Implications for vaccine design
-
Khan AM, Miotto O, Nascimento EJ, Srinivasan KN, Heiny AT, et al. (2008) Conservation and variability of dengue virus proteins: implications for vaccine design. PLoS Negl Trop Dis 2: e272.
-
(2008)
PLoS Negl Trop Dis
, vol.2
-
-
Khan, A.M.1
Miotto, O.2
Nascimento, E.J.3
Srinivasan, K.N.4
Heiny, A.T.5
-
18
-
-
43149084860
-
-
PLoS
-
Heiny AT, Miotto O, Srinivasan KN, Khan AM, Zhang GL, et al. (2007) Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets. PLoS ONE 2: e1190.
-
(2007)
Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets
, vol.ONE 2
-
-
Heiny, A.T.1
Miotto, O.2
Srinivasan, K.N.3
Khan, A.M.4
Zhang, G.L.5
-
19
-
-
13444293344
-
Database resources of the National Center for Biotechnology Information
-
Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, et al. (2005) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 33: D39-45.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
-
20
-
-
3242876311
-
BLAST: At the core of a powerful and diverse set of sequence analysis tools
-
McGinnis S, Madden TL (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32: W20-25.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
McGinnis, S.1
Madden, T.L.2
-
21
-
-
0001619859
-
High-quality protein knowledge resource: SWISS-PROT and TrEMBL
-
O'Donovan C, Martin MJ, Gattiker A, Gasteiger E, Bairoch A, et al. (2002) High-quality protein knowledge resource: SWISS-PROT and TrEMBL. Brief Bioinform 3: 275-284.
-
(2002)
Brief Bioinform
, vol.3
, pp. 275-284
-
-
O'Donovan, C.1
Martin, M.J.2
Gattiker, A.3
Gasteiger, E.4
Bairoch, A.5
-
22
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
23
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
24
-
-
84856043672
-
A mathematical theory of communication
-
and
-
Shannon CE (1948) A mathematical theory of communication. Bell System Technical Journal 27: 379-423 and 623-656.
-
(1948)
Bell System Technical Journal
, vol.27
-
-
Shannon, C.E.1
-
25
-
-
43149095780
-
Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis
-
Miotto O, Heiny A, Tan TW, August JT, Brusic V (2008) Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. BMC Bioinformatics 9 Suppl 1: S18.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 1
-
-
Miotto, O.1
Heiny, A.2
Tan, T.W.3
August, J.T.4
Brusic, V.5
-
26
-
-
0028922319
-
Chemistry of peptides associated with MHC class I and class II molecules
-
Rammensee HG (1995) Chemistry of peptides associated with MHC class I and class II molecules. Curr Opin Immunol 7: 85-96.
-
(1995)
Curr Opin Immunol
, vol.7
, pp. 85-96
-
-
Rammensee, H.G.1
-
27
-
-
33644876022
-
The PROSITE database
-
Hulo N, Bairoch A, Bulliard V, Cerutti L, De Castro E, et al. (2006) The PROSITE database. Nucleic Acids Res 34: D227-230.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Hulo, N.1
Bairoch, A.2
Bulliard, V.3
Cerutti, L.4
De Castro, E.5
-
28
-
-
33747839468
-
ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
-
de Castro E, Sigrist CJ, Gattiker A, Bulliard V, Langendijk-Genevaux PS, et al. (2006) ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Res 34: W362-365.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
de Castro, E.1
Sigrist, C.J.2
Gattiker, A.3
Bulliard, V.4
Langendijk-Genevaux, P.S.5
-
29
-
-
9144257886
-
The Pfam protein families database
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, et al. (2004) The Pfam protein families database. Nucleic Acids Res 32: D138-141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
-
30
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
31
-
-
20944447214
-
The immune epitope database and analysis resource: From vision to blueprint
-
Peters B, Sidney J, Bourne P, Bui HH, Buus S, et al. (2005) The immune epitope database and analysis resource: from vision to blueprint. PLoS Biol 3: e91.
-
(2005)
PLoS Biol
, vol.3
-
-
Peters, B.1
Sidney, J.2
Bourne, P.3
Bui, H.H.4
Buus, S.5
-
32
-
-
23844528191
-
An integrative approach to CTL epitope prediction: A combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions
-
Larsen MV, Lundegaard C, Lamberth K, Buus S, Brunak S, et al. (2005) An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions. Eur J Immunol 35: 2295-2303.
-
(2005)
Eur J Immunol
, vol.35
, pp. 2295-2303
-
-
Larsen, M.V.1
Lundegaard, C.2
Lamberth, K.3
Buus, S.4
Brunak, S.5
-
33
-
-
23144455463
-
MULTIPRED: A computational system for prediction of promiscuous HLA binding peptides
-
Zhang GL, Khan AM, Srinivasan KN, August JT, Brusic V (2005) MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. Nucleic Acids Res 33: W172-179.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Zhang, G.L.1
Khan, A.M.2
Srinivasan, K.N.3
August, J.T.4
Brusic, V.5
-
34
-
-
21344466799
-
Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications
-
Bui HH, Sidney J, Peters B, Sathiamurthy M, Sinichi A, et al. (2005) Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications. Immunogenetics 57: 304-314.
-
(2005)
Immunogenetics
, vol.57
, pp. 304-314
-
-
Bui, H.H.1
Sidney, J.2
Peters, B.3
Sathiamurthy, M.4
Sinichi, A.5
-
35
-
-
7944224384
-
Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE
-
Bian H, Hammer J (2004) Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE. Methods 34: 468-475.
-
(2004)
Methods
, vol.34
, pp. 468-475
-
-
Bian, H.1
Hammer, J.2
-
36
-
-
0036681416
-
Scoring residue conservation
-
Valdar WS (2002) Scoring residue conservation. Proteins 48: 227-241.
-
(2002)
Proteins
, vol.48
, pp. 227-241
-
-
Valdar, W.S.1
-
37
-
-
33750744140
-
Crystal structure of west nile virus envelope glycoprotein reveals viral surface epitopes
-
Kanai R, Kar K, Anthony K, Gould LH, Ledizet M, et al. (2006) Crystal structure of west nile virus envelope glycoprotein reveals viral surface epitopes. J Virol 80: 11000-11008.
-
(2006)
J Virol
, vol.80
, pp. 11000-11008
-
-
Kanai, R.1
Kar, K.2
Anthony, K.3
Gould, L.H.4
Ledizet, M.5
-
38
-
-
0141993711
-
Structure of West Nile virus
-
Mukhopadhyay S, Kim BS, Chipman PR, Rossmann MG, Kuhn RJ (2003) Structure of West Nile virus. Science 302: 248.
-
(2003)
Science
, vol.302
, pp. 248
-
-
Mukhopadhyay, S.1
Kim, B.S.2
Chipman, P.R.3
Rossmann, M.G.4
Kuhn, R.J.5
-
39
-
-
0032976077
-
The serine protease and RNA-stimulated nucleoside triphosphatase and RNA helicase functional domains of dengue virus type 2 NS3 converge within a region of 20 amino acids
-
Li H, Clum S, You S, Ebner KE, Padmanabhan R (1999) The serine protease and RNA-stimulated nucleoside triphosphatase and RNA helicase functional domains of dengue virus type 2 NS3 converge within a region of 20 amino acids. J Virol 73: 3108-3116.
-
(1999)
J Virol
, vol.73
, pp. 3108-3116
-
-
Li, H.1
Clum, S.2
You, S.3
Ebner, K.E.4
Padmanabhan, R.5
-
40
-
-
33745025763
-
Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus
-
Erbel P, Schiering N, D'Arcy A, Renatus M, Kroemer M, et al. (2006) Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus. Nat Struct Mol Biol 13: 372-373.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 372-373
-
-
Erbel, P.1
Schiering, N.2
D'Arcy, A.3
Renatus, M.4
Kroemer, M.5
-
41
-
-
44349170491
-
Insights into the oligomerization state-helicase activity relationship of West Nile virus NS3 NTPase/helicase
-
Feito MJ, Gomez-Gutierrez J, Ayora S, Alonso JC, Peterson D, et al. (2008) Insights into the oligomerization state-helicase activity relationship of West Nile virus NS3 NTPase/helicase. Virus Res 135: 166-174.
-
(2008)
Virus Res
, vol.135
, pp. 166-174
-
-
Feito, M.J.1
Gomez-Gutierrez, J.2
Ayora, S.3
Alonso, J.C.4
Peterson, D.5
-
42
-
-
34047171495
-
West Nile virus strain Kunjin NS5 polymerase is a phosphoprotein localized at the cytoplasmic site of viral RNA synthesis
-
Mackenzie JM, Kenney MT, Westaway EG (2007) West Nile virus strain Kunjin NS5 polymerase is a phosphoprotein localized at the cytoplasmic site of viral RNA synthesis. J Gen Virol 88: 1163-1168.
-
(2007)
J Gen Virol
, vol.88
, pp. 1163-1168
-
-
Mackenzie, J.M.1
Kenney, M.T.2
Westaway, E.G.3
-
43
-
-
34249845069
-
Crystal structure of the RNA polymerase domain of the West Nile virus non-structural protein 5
-
Malet H, Egloff MP, Selisko B, Butcher RE, Wright PJ, et al. (2007) Crystal structure of the RNA polymerase domain of the West Nile virus non-structural protein 5. J Biol Chem 282: 10678-10689.
-
(2007)
J Biol Chem
, vol.282
, pp. 10678-10689
-
-
Malet, H.1
Egloff, M.P.2
Selisko, B.3
Butcher, R.E.4
Wright, P.J.5
-
44
-
-
41949142649
-
Hotspot Hunter: A computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes
-
Zhang GL, Khan AM, Srinivasan KN, Heiny A, Lee K, et al. (2008) Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes. BMC Bioinformatics 9 Suppl 1: S19.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 1
-
-
Zhang, G.L.1
Khan, A.M.2
Srinivasan, K.N.3
Heiny, A.4
Lee, K.5
-
46
-
-
21344466779
-
A structural basis for allosteric control of DNA recombination by lambda integrase
-
Biswas T, Aihara H, Radman-Livaja M, Filman D, Landy A, et al. (2005) A structural basis for allosteric control of DNA recombination by lambda integrase. Nature 435: 1059-1066.
-
(2005)
Nature
, vol.435
, pp. 1059-1066
-
-
Biswas, T.1
Aihara, H.2
Radman-Livaja, M.3
Filman, D.4
Landy, A.5
-
48
-
-
3342978236
-
Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes
-
Crochu S, Cook S, Attoui H, Charrel RN, De Chesse R, et al. (2004) Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes. J Gen Virol 85: 1971-1980.
-
(2004)
J Gen Virol
, vol.85
, pp. 1971-1980
-
-
Crochu, S.1
Cook, S.2
Attoui, H.3
Charrel, R.N.4
De Chesse, R.5
-
50
-
-
0029085843
-
Flavivirus-cross-reactive, HLA-DR15-restricted epitope on NS3 recognized by human CD4+ CD8- cytotoxic T lymphocyte clones
-
Kurane I, Okamoto Y, Dai LC, Zeng LL, Brinton MA, et al. (1995) Flavivirus-cross-reactive, HLA-DR15-restricted epitope on NS3 recognized by human CD4+ CD8- cytotoxic T lymphocyte clones. J Gen Virol 76(Pt 9): 2243-2249.
-
(1995)
J Gen Virol
, vol.76
, Issue.PART 9
, pp. 2243-2249
-
-
Kurane, I.1
Okamoto, Y.2
Dai, L.C.3
Zeng, L.L.4
Brinton, M.A.5
-
51
-
-
0034845973
-
Rapid determination of HLA B*07 ligands from the West Nile virus NY99 genome
-
De Groot AS, Saint-Aubin C, Bosma A, Sbai H, Rayner J, et al. (2001) Rapid determination of HLA B*07 ligands from the West Nile virus NY99 genome. Emerg Infect Dis 7: 706-713.
-
(2001)
Emerg Infect Dis
, vol.7
, pp. 706-713
-
-
De Groot, A.S.1
Saint-Aubin, C.2
Bosma, A.3
Sbai, H.4
Rayner, J.5
|