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Volumn 4, Issue 4, 2009, Pages

Conservation and variability of West Nile virus proteins

Author keywords

[No Author keywords available]

Indexed keywords

MICROORGANISM PROTEIN; NONSTRUCTURAL PROTEIN 1; NONSTRUCTURAL PROTEIN 2; NONSTRUCTURAL PROTEIN 2A; NONSTRUCTURAL PROTEIN 2B; NONSTRUCTURAL PROTEIN 3; NONSTRUCTURAL PROTEIN 4A; NONSTRUCTURAL PROTEIN 4B; NONSTRUCTURAL PROTEIN 5; PROTEIN C; PROTEIN E; PROTEIN PRM; UNCLASSIFIED DRUG; VIRUS PROTEIN; EPITOPE; HLA ANTIGEN; PROTEOME; VIRUS ANTIGEN;

EID: 65549120233     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0005352     Document Type: Article
Times cited : (25)

References (51)
  • 2
    • 0034852978 scopus 로고    scopus 로고
    • West Nile virus: A reemerging global pathogen
    • Petersen LR, Roehrig JT (2001) West Nile virus: a reemerging global pathogen. Emerg Infect Dis 7: 611-614.
    • (2001) Emerg Infect Dis , vol.7 , pp. 611-614
    • Petersen, L.R.1    Roehrig, J.T.2
  • 4
    • 0033579282 scopus 로고    scopus 로고
    • Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States
    • Lanciotti RS, Roehrig JT, Deubel V, Smith J, Parker M, et al. (1999) Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States. Science 286: 2333-2337.
    • (1999) Science , vol.286 , pp. 2333-2337
    • Lanciotti, R.S.1    Roehrig, J.T.2    Deubel, V.3    Smith, J.4    Parker, M.5
  • 6
    • 22944485635 scopus 로고    scopus 로고
    • Virology, pathology, and clinical manifestations of West Nile virus disease
    • Hayes EB, Sejvar JJ, Zaki SR, Lanciotti RS, Bode AV, et al. (2005) Virology, pathology, and clinical manifestations of West Nile virus disease. Emerg Infect Dis 11: 1174-1179.
    • (2005) Emerg Infect Dis , vol.11 , pp. 1174-1179
    • Hayes, E.B.1    Sejvar, J.J.2    Zaki, S.R.3    Lanciotti, R.S.4    Bode, A.V.5
  • 7
    • 0030915420 scopus 로고    scopus 로고
    • RNA virus evolution, population dynamics, and nutritional status
    • Domingo E (1997) RNA virus evolution, population dynamics, and nutritional status. Biol Trace Elem Res 56: 23-30.
    • (1997) Biol Trace Elem Res , vol.56 , pp. 23-30
    • Domingo, E.1
  • 10
    • 43049114537 scopus 로고    scopus 로고
    • Comprehensive analysis of west nile virus-specific T cell responses in humans
    • Lanteri MC, Heitman JW, Owen RE, Busch T, Gefter N, et al. (2008) Comprehensive analysis of west nile virus-specific T cell responses in humans. J Infect Dis 197: 1296-1306.
    • (2008) J Infect Dis , vol.197 , pp. 1296-1306
    • Lanteri, M.C.1    Heitman, J.W.2    Owen, R.E.3    Busch, T.4    Gefter, N.5
  • 11
    • 0344736813 scopus 로고    scopus 로고
    • CD8+ T cells mediate recovery and immunopathology in West Nile virus encephalitis
    • Wang Y, Lobigs M, Lee E, Mullbacher A (2003) CD8+ T cells mediate recovery and immunopathology in West Nile virus encephalitis. J Virol 77: 13323-13334.
    • (2003) J Virol , vol.77 , pp. 13323-13334
    • Wang, Y.1    Lobigs, M.2    Lee, E.3    Mullbacher, A.4
  • 12
    • 1442276260 scopus 로고    scopus 로고
    • Major histocompatibility complex class I (MHC-I) induction by West Nile virus: Involvement of 2 signaling pathways in MHC-I up-regulation
    • Cheng Y, King NJ, Kesson AM (2004) Major histocompatibility complex class I (MHC-I) induction by West Nile virus: involvement of 2 signaling pathways in MHC-I up-regulation. J Infect Dis 189: 658-668.
    • (2004) J Infect Dis , vol.189 , pp. 658-668
    • Cheng, Y.1    King, N.J.2    Kesson, A.M.3
  • 13
    • 33646738698 scopus 로고    scopus 로고
    • Gamma interferon plays a crucial early antiviral role in protection against West Nile virus infection
    • Shrestha B, Wang T, Samuel MA, Whitby K, Craft J, et al. (2006) Gamma interferon plays a crucial early antiviral role in protection against West Nile virus infection. J Virol 80: 5338-5348.
    • (2006) J Virol , vol.80 , pp. 5338-5348
    • Shrestha, B.1    Wang, T.2    Samuel, M.A.3    Whitby, K.4    Craft, J.5
  • 14
    • 34447557656 scopus 로고    scopus 로고
    • Protective capacity and epitope specificity of CD8(+) T cells responding to lethal West Nile virus infection
    • Brien JD, Uhrlaub JL, Nikolich-Zugich J (2007) Protective capacity and epitope specificity of CD8(+) T cells responding to lethal West Nile virus infection. Eur J Immunol 37: 1855-1863.
    • (2007) Eur J Immunol , vol.37 , pp. 1855-1863
    • Brien, J.D.1    Uhrlaub, J.L.2    Nikolich-Zugich, J.3
  • 15
    • 34447580875 scopus 로고    scopus 로고
    • Antigen-specific cytotoxic T lymphocytes protect against lethal West Nile virus encephalitis
    • Purtha WE, Myers N, Mitaksov V, Sitati E, Connolly J, et al. (2007) Antigen-specific cytotoxic T lymphocytes protect against lethal West Nile virus encephalitis. Eur J Immunol 37: 1845-1854.
    • (2007) Eur J Immunol , vol.37 , pp. 1845-1854
    • Purtha, W.E.1    Myers, N.2    Mitaksov, V.3    Sitati, E.4    Connolly, J.5
  • 16
    • 34248397523 scopus 로고    scopus 로고
    • A systematic bioinformatics approach for selection of epitope-based vaccine targets
    • Khan AM, Miotto O, Heiny AT, Salmon J, Srinivasan KN, et al. (2006) A systematic bioinformatics approach for selection of epitope-based vaccine targets. Cell Immunol 244: 141-147.
    • (2006) Cell Immunol , vol.244 , pp. 141-147
    • Khan, A.M.1    Miotto, O.2    Heiny, A.T.3    Salmon, J.4    Srinivasan, K.N.5
  • 20
    • 3242876311 scopus 로고    scopus 로고
    • BLAST: At the core of a powerful and diverse set of sequence analysis tools
    • McGinnis S, Madden TL (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32: W20-25.
    • (2004) Nucleic Acids Res , vol.32
    • McGinnis, S.1    Madden, T.L.2
  • 22
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 23
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 24
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • and
    • Shannon CE (1948) A mathematical theory of communication. Bell System Technical Journal 27: 379-423 and 623-656.
    • (1948) Bell System Technical Journal , vol.27
    • Shannon, C.E.1
  • 25
    • 43149095780 scopus 로고    scopus 로고
    • Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis
    • Miotto O, Heiny A, Tan TW, August JT, Brusic V (2008) Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. BMC Bioinformatics 9 Suppl 1: S18.
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL. 1
    • Miotto, O.1    Heiny, A.2    Tan, T.W.3    August, J.T.4    Brusic, V.5
  • 26
    • 0028922319 scopus 로고
    • Chemistry of peptides associated with MHC class I and class II molecules
    • Rammensee HG (1995) Chemistry of peptides associated with MHC class I and class II molecules. Curr Opin Immunol 7: 85-96.
    • (1995) Curr Opin Immunol , vol.7 , pp. 85-96
    • Rammensee, H.G.1
  • 28
    • 33747839468 scopus 로고    scopus 로고
    • ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    • de Castro E, Sigrist CJ, Gattiker A, Bulliard V, Langendijk-Genevaux PS, et al. (2006) ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Res 34: W362-365.
    • (2006) Nucleic Acids Res , vol.34
    • de Castro, E.1    Sigrist, C.J.2    Gattiker, A.3    Bulliard, V.4    Langendijk-Genevaux, P.S.5
  • 31
    • 20944447214 scopus 로고    scopus 로고
    • The immune epitope database and analysis resource: From vision to blueprint
    • Peters B, Sidney J, Bourne P, Bui HH, Buus S, et al. (2005) The immune epitope database and analysis resource: from vision to blueprint. PLoS Biol 3: e91.
    • (2005) PLoS Biol , vol.3
    • Peters, B.1    Sidney, J.2    Bourne, P.3    Bui, H.H.4    Buus, S.5
  • 32
    • 23844528191 scopus 로고    scopus 로고
    • An integrative approach to CTL epitope prediction: A combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions
    • Larsen MV, Lundegaard C, Lamberth K, Buus S, Brunak S, et al. (2005) An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions. Eur J Immunol 35: 2295-2303.
    • (2005) Eur J Immunol , vol.35 , pp. 2295-2303
    • Larsen, M.V.1    Lundegaard, C.2    Lamberth, K.3    Buus, S.4    Brunak, S.5
  • 34
    • 21344466799 scopus 로고    scopus 로고
    • Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications
    • Bui HH, Sidney J, Peters B, Sathiamurthy M, Sinichi A, et al. (2005) Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications. Immunogenetics 57: 304-314.
    • (2005) Immunogenetics , vol.57 , pp. 304-314
    • Bui, H.H.1    Sidney, J.2    Peters, B.3    Sathiamurthy, M.4    Sinichi, A.5
  • 35
    • 7944224384 scopus 로고    scopus 로고
    • Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE
    • Bian H, Hammer J (2004) Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE. Methods 34: 468-475.
    • (2004) Methods , vol.34 , pp. 468-475
    • Bian, H.1    Hammer, J.2
  • 36
    • 0036681416 scopus 로고    scopus 로고
    • Scoring residue conservation
    • Valdar WS (2002) Scoring residue conservation. Proteins 48: 227-241.
    • (2002) Proteins , vol.48 , pp. 227-241
    • Valdar, W.S.1
  • 37
    • 33750744140 scopus 로고    scopus 로고
    • Crystal structure of west nile virus envelope glycoprotein reveals viral surface epitopes
    • Kanai R, Kar K, Anthony K, Gould LH, Ledizet M, et al. (2006) Crystal structure of west nile virus envelope glycoprotein reveals viral surface epitopes. J Virol 80: 11000-11008.
    • (2006) J Virol , vol.80 , pp. 11000-11008
    • Kanai, R.1    Kar, K.2    Anthony, K.3    Gould, L.H.4    Ledizet, M.5
  • 39
    • 0032976077 scopus 로고    scopus 로고
    • The serine protease and RNA-stimulated nucleoside triphosphatase and RNA helicase functional domains of dengue virus type 2 NS3 converge within a region of 20 amino acids
    • Li H, Clum S, You S, Ebner KE, Padmanabhan R (1999) The serine protease and RNA-stimulated nucleoside triphosphatase and RNA helicase functional domains of dengue virus type 2 NS3 converge within a region of 20 amino acids. J Virol 73: 3108-3116.
    • (1999) J Virol , vol.73 , pp. 3108-3116
    • Li, H.1    Clum, S.2    You, S.3    Ebner, K.E.4    Padmanabhan, R.5
  • 40
    • 33745025763 scopus 로고    scopus 로고
    • Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus
    • Erbel P, Schiering N, D'Arcy A, Renatus M, Kroemer M, et al. (2006) Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus. Nat Struct Mol Biol 13: 372-373.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 372-373
    • Erbel, P.1    Schiering, N.2    D'Arcy, A.3    Renatus, M.4    Kroemer, M.5
  • 41
    • 44349170491 scopus 로고    scopus 로고
    • Insights into the oligomerization state-helicase activity relationship of West Nile virus NS3 NTPase/helicase
    • Feito MJ, Gomez-Gutierrez J, Ayora S, Alonso JC, Peterson D, et al. (2008) Insights into the oligomerization state-helicase activity relationship of West Nile virus NS3 NTPase/helicase. Virus Res 135: 166-174.
    • (2008) Virus Res , vol.135 , pp. 166-174
    • Feito, M.J.1    Gomez-Gutierrez, J.2    Ayora, S.3    Alonso, J.C.4    Peterson, D.5
  • 42
    • 34047171495 scopus 로고    scopus 로고
    • West Nile virus strain Kunjin NS5 polymerase is a phosphoprotein localized at the cytoplasmic site of viral RNA synthesis
    • Mackenzie JM, Kenney MT, Westaway EG (2007) West Nile virus strain Kunjin NS5 polymerase is a phosphoprotein localized at the cytoplasmic site of viral RNA synthesis. J Gen Virol 88: 1163-1168.
    • (2007) J Gen Virol , vol.88 , pp. 1163-1168
    • Mackenzie, J.M.1    Kenney, M.T.2    Westaway, E.G.3
  • 43
    • 34249845069 scopus 로고    scopus 로고
    • Crystal structure of the RNA polymerase domain of the West Nile virus non-structural protein 5
    • Malet H, Egloff MP, Selisko B, Butcher RE, Wright PJ, et al. (2007) Crystal structure of the RNA polymerase domain of the West Nile virus non-structural protein 5. J Biol Chem 282: 10678-10689.
    • (2007) J Biol Chem , vol.282 , pp. 10678-10689
    • Malet, H.1    Egloff, M.P.2    Selisko, B.3    Butcher, R.E.4    Wright, P.J.5
  • 44
    • 41949142649 scopus 로고    scopus 로고
    • Hotspot Hunter: A computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes
    • Zhang GL, Khan AM, Srinivasan KN, Heiny A, Lee K, et al. (2008) Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes. BMC Bioinformatics 9 Suppl 1: S19.
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL. 1
    • Zhang, G.L.1    Khan, A.M.2    Srinivasan, K.N.3    Heiny, A.4    Lee, K.5
  • 46
    • 21344466779 scopus 로고    scopus 로고
    • A structural basis for allosteric control of DNA recombination by lambda integrase
    • Biswas T, Aihara H, Radman-Livaja M, Filman D, Landy A, et al. (2005) A structural basis for allosteric control of DNA recombination by lambda integrase. Nature 435: 1059-1066.
    • (2005) Nature , vol.435 , pp. 1059-1066
    • Biswas, T.1    Aihara, H.2    Radman-Livaja, M.3    Filman, D.4    Landy, A.5
  • 48
    • 3342978236 scopus 로고    scopus 로고
    • Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes
    • Crochu S, Cook S, Attoui H, Charrel RN, De Chesse R, et al. (2004) Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes. J Gen Virol 85: 1971-1980.
    • (2004) J Gen Virol , vol.85 , pp. 1971-1980
    • Crochu, S.1    Cook, S.2    Attoui, H.3    Charrel, R.N.4    De Chesse, R.5
  • 50
    • 0029085843 scopus 로고
    • Flavivirus-cross-reactive, HLA-DR15-restricted epitope on NS3 recognized by human CD4+ CD8- cytotoxic T lymphocyte clones
    • Kurane I, Okamoto Y, Dai LC, Zeng LL, Brinton MA, et al. (1995) Flavivirus-cross-reactive, HLA-DR15-restricted epitope on NS3 recognized by human CD4+ CD8- cytotoxic T lymphocyte clones. J Gen Virol 76(Pt 9): 2243-2249.
    • (1995) J Gen Virol , vol.76 , Issue.PART 9 , pp. 2243-2249
    • Kurane, I.1    Okamoto, Y.2    Dai, L.C.3    Zeng, L.L.4    Brinton, M.A.5
  • 51
    • 0034845973 scopus 로고    scopus 로고
    • Rapid determination of HLA B*07 ligands from the West Nile virus NY99 genome
    • De Groot AS, Saint-Aubin C, Bosma A, Sbai H, Rayner J, et al. (2001) Rapid determination of HLA B*07 ligands from the West Nile virus NY99 genome. Emerg Infect Dis 7: 706-713.
    • (2001) Emerg Infect Dis , vol.7 , pp. 706-713
    • De Groot, A.S.1    Saint-Aubin, C.2    Bosma, A.3    Sbai, H.4    Rayner, J.5


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