Turbulence-plankton interactions: A new cartoon

Marine Ecology

Volumn 30, Issue 2, 2009, Pages 133-150

  Jumars, Peter A ^a   Trowbridge, John H ^b   Boss, Emmanuel ^a   Karp Boss, Lee ^a  

^a UNIVERSITY OF MAINE   (United States)

^b WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

Author keywords

Plankton; Shear; Turbulence; Vortex; Vorticity

Indexed keywords

CLIMATE CHANGE; DISSIPATION; FLUID DYNAMICS; NUTRIENT UPTAKE; PLANKTON; PREDATOR-PREY INTERACTION; SIMULATION; TURBULENCE; VORTEX; VORTICITY;

EID: 65549107080     PISSN: 01739565     EISSN: 14390485     Source Type: Journal    
DOI: 10.1111/j.1439-0485.2009.00288.x     Document Type: Article

References (78)

1. Acheson D.J. (1990) Elementary Fluid Mechanics. Oxford University Press, Oxford.
2. Andersen A., Bohr T., Stenum B., Rasmussen J.J., Lautrup B. (2003) Anatomy of a bathtub vortex. Physical Review Letters 91, 104502-1-104502-4. doi: 10.1103/PhysRevLett.91.104502
3. Batchelor G.K. (1967) An Introduction to Fluid Dynamics. Cambridge University Press, Cambridge.
4. Bec J., Biferale L., Boffetta G., Celani A., Cencini M., Lanotte A., Musacchio S., Toschi F. (2006) Acceleration statistics of heavy particles in turbulence. Journal of Fluid Mechanics, 550, 349-358.
5. Bosse T., Kleiser L, Meiburg E. (2006) Small particles in homogeneous turbulence: Settling velocity enhancement by two-way coupling. Physics of Fluids, 18, 02712.
6. Burchard H. (2001) Simulating the wave-enhanced layer under breaking surface waves with two-equation turbulence models. Journal of Physical Oceanography, 31, 3133-3145.
7. Burgers J.M. (1948) A mathematical model illustrating the theory of turbulence. Advances in Applied Mechanics, 1, 171-199.
8. Buskey E.J., Lenz P.H., Hartline D.K. (2002) Escape behavior of planktonic copepods in response to hydrodynamic disturbances: High speed video analysis. Marine Ecology Progress Series, 235, 135-146.
9. Crimaldi J.P., Browning H.S. (2004) A proposed mechanism for turbulent enhancement of broadcast spawning efficiency. Journal of Marine Systems, 49, 3-18.
10. Crimaldi J.P., Hartford J.R., Weiss J.B. (2006) Reaction enhancement of point sources due to vortex stirring. Physical Review E, 74, 016307.
11. D'Asaro E. (2001) Turbulent vertical kinetic energy in the ocean mixed layer. Journal of Physical Oceanography, 31, 3530-3537.
12. Davidson P.A. (2004) Turbulence: An Introduction for Scientists and Engineers. Oxford University Press, Oxford.
13. Drennan W.M., Donelan M.A., Terray E.A., Katsaros K.B. (1996) Ocean turbulence dissipation measurements in SWADE. Journal of Physical Oceanography, 26, 808-815.
14. Durham W.M., Kessler J.O., Stocker R. (2009) Disruption of vertical motility by shear triggers formation of thin phytoplankton layers. Science, 323, 1067-1070.
15. Feddersen F., Trowbridge J.H., Williams A.J. III (2007) Vertical structure of dissipation in the nearshore. Journal of Physical Oceanography, 37, 1764-1777.
16. Friedman P.D., Katz J. (2002) Mean rise rate of droplets in isotropic turbulence. Physics of Fluids, 14, 3059-3073.
17. Frisch U. (1995) Turbulence. Cambridge University Press, Cambridge.
18. Gargett A.E. (1997) 'Theories' and techniques for observing turbulence in the ocean euphotic zone. Scientia Marina, 61 (Suppl. 1), 25-45.
19. Gerbi G.P., Trowbridge J.H., Edson J.B., Plueddemann A.J., Terray E.A., Fredericks J.J. (2008) Measurements of momentum and heat transfer across the air-sea interface. Journal of Physical Oceanography, 38, 1054-1072.
20. Gerbi G.P., Trowbridge J.H., Terray E.A., Plueddemann A.J., Kukulka T. (2009) Observations of turbulence in the ocean surface boundary layer: energetics and transport. Journal of Physical Oceanography, doi: 10.1175/ 2008Jp04044.1, in press.
21. Ghosh S., Dávilla J., Hunt J.C.R., Srdic A., Fernando H.J.S., Jonas P.R. (2005) How turbulence enhances coalescence of settling particles with applications to rain in clouds. Proceedings of the Royal Society of London. Series A: Mathematical and Physical Sciences, 461, 3059-3088.
22. Gopalan B., Malkiel E., Karp-Boss L., Sheng J., Katz J. (2008) Diffusion of particles in isotropic turbulence using high speed digital holographic cinematography. Ocean Sciences Meeting abstract http://www.sgmeet.com/aslo/orlando2008/viewabstract2.asp?AbstractID=3210.
23. Gotoh T., Fukayama D., Nakano T. (2002) Velocity field statistics in homogeneous steady turbulence obtained using a high-resolution direct numerical simulation. Physics of Fluids, 14, 1065-1081.
24. Gross T.F., Nowell A.R.M. (1983) Mean flow and turbulence scaling in a tidal boundary layer. Continental Shelf Research, 2, 109-126.
25. Grünbaum D., Strathmann R.R. (2003) Form, performance and trade-offs in swimming and stability of armed larvae. Journal of Marine Research, 61, 659-691.
26. Hadfield M.G., Koehl M.A.R. (2004) Rapid behavioral responses of an invertebrate larva to dissolved settlement cue. Biological Bulletin, 207, 28-43.
27. Hatakeyama N., Kambe T. (1997) Statistical laws of random strained vortices in turbulence. Physical Review Letters, 79, 1257-1260.
28. He G., Doolen G.D., Chen S. (1999) Calculation of longitudinal and transverse velocity structure functions using a vortex model of isotropic turbulence. Physics of Fluids, 11, 3743-3748.
29. Hill P.S., Nowell A.R.M., Jumars P.A. (1992) Encounter rate by turbulent shear of particles similar in diameter to the Kolmogorov scale. Journal of Marine Research, 50, 643-668.
30. Ijzermans R.H.A., Hagmeijer R. (2006) Accumulation of heavy particles in a bounded vortex flow. In: Balachandar S., Prosperetti A. (Eds), IUTAM Symposium on Computational Approaches to Multiphase Flow. Springer, Netherlands: 75-85.
31. Jeffery G. B. (1922) The motion of ellipsoidal particles immersed in a viscous fluid. Proceedings of the Royal Society of London. Series A: Mathematical and Physical Sciences, 102, 161-179.
32. Jones N. L., Monismith S.G. (2008) The influence of whitecapping waves on the vertical structure of turbulence in a shallow estuarine environment. Journal of Physical Oceanography, 38, 1563-1580.
33. Karp-Boss L., Jumars P.A. (1998) Motion of diatom chains in steady shear. Limnology and Oceanography, 43, 1767-1773.
34. Karp-Boss L., Boss E., Jumars P.A. (1996) Nutrient fluxes to planktonic osmotrophs in the presence of fluid motion. Oceanography and Marine Biology, An Annual Review, 34, 71-107.
35. Karp-Boss L., Boss E., Jumars P.A. (2000) Effects of shear on swimming by dinoflagellate individuals and chains. Limnology and Oceanography, 45, 1594-1602.
36. Kiørboe T. (2008) A Mechanistic Approach to Zooplankton Ecology. Princeton University Press, Princeton.
37. Kiørboe T., Visser A.W. (2005) Plankton motility patterns and encounter rates. Oecologia, 148, 538-546.
38. Koehl M.A.R., Jumars P.A., Karp-Boss L. (2003) Algal physics. In: Norton T.A. (Ed.), Out of the Past. British Phycological Association, Belfast: 115-130.
39. Kolmogorov A.N. (1941) Dissipation of energy in a locally isotropic turbulence. Doklady Akademii Nauk SSSR, 32, 16-18. (English translation in Proceedings of the Royal Society of London A 434: 15-17, 1991)
40. Lamb H. (1932) Hydrodynamics. Cambridge University Press, Cambridge.
41. Latz M.I., Case J.F., Gran R.L. (1994) Excitation of bioluminescence by laminar fluid shear associated with simple Couette flow. Limnology and Oceanography, 39, 1424-1439.
42. Lazier J.R.N., Mann K.H. (1989) Turbulence and diffusive layers around small organisms. Deep-Sea Research, 36, 1721-1733.
43. Liao J.C., Beal D.N., Lauder G.V., Triantalyllou M.S. (2003) The Kármán gait: Novel body kinematics of rainbow trout swimming in a vortex street. Journal of Experimental Biology, 206, 1059-1073.
44. Lundgren T.S. (1982) Strained spiral vortex model for turbulent fine structure. Physics of Fluids, 25, 2193-2203.
45. Marcos Stocker R. (2006) Microorganisms in vortices: A microfluidic setup. Limnology and Oceanography: Methods, 4, 392-398.
46. Marcu B., Meiburg E., Newton P.K. (1995) Dynamics of heavy particles in a Burgers vortex. Physics of Fluids, 7, 400-410.
47. Margalef R. (1978) Life-forms of phytoplankton as survival alternative in an unstable environment. Oceanologica Acta, 1, 493-509.
48. Margalef R., Estrada M., Blasco D. (1979) Functional morphology of organisms involved in red tides, as adapted to decaying turbulence. In: Taylor D., Selinger H. (Eds), Toxic Dinoflagellate Blooms. Elsevier, New York: 89-94.
49. Monin A.S., Yaglom A.M. (1971) Statistical Fluid Mechanics, Vol. 1, MIT Press, Cambridge, MA.
50. Munk W.H., Riley G.A. (1952) Absorption of nutrients by aquatic plants. Journal of Marine Research, 11, 215-240.
51. Murray J.L.S., Jumars P.A. (2002) Clonal fitness of bacteria predicted by analog modeling. BioScience, 52, 343-355.
52. Nowell A.R.M., Jumars P.A. (1987) Flumes: Theoretical and experimental considerations for simulation of benthic environments. Oceanography and Marine Biology, An Annual Review, 25, 91-112.
53. Pahlow M., Riebesell U., Wolf-Gladrow D.A. (1997) Impact of cell shape and chain formation on nutrient acquisition by marine diatoms. Limnology and Oceanography, 42, 1660-1672.
54. Peskin C.S. (2002) The immersed boundary method. Acta Numerica, 11, 479-517.
55. Peters F., Redondo J.M. (1997) Turbulence generation and measurement: application to studies on plankton. Scientia Marina, 61 (Suppl. 1), 205-228.
56. Petitjeans P. (2003) Stretching of a vortical structure: Filaments of vorticity. Europhysics News, 34, 20-23.
57. Pullin D.I., Saffman P.G. (1998) Vortex dynamics in turbulence. Annual Review of Fluid Dynamics, 30, 31-51.
58. Ruiz J., Macías D., Peters F. (2004) Turbulence increases the average settling velocity of phytoplankton cells. Proceedings of the National Academy of Sciences of the USA, 101, 17720-17724.
59. Saffman P.G. (1992) Vortex Dynamics. Cambridge University Press, Cambridge.
60. Sanford L.P. (1997) Turbulent mixing in experimental ecosystem studies. Marine Ecology Progress Series, 161, 265-293.
61. Shimeta J., Jumars P.A., Lessard E.J. (1995) Influences of turbulence on suspension feeding by planktonic protozoa; experiments in laminar shear fields. Limnology and Oceanography, 40, 845-859.
62. Solari C.A., Ganguly S., Kessler J.O., Michod R.E., Goldstein R.E. (2006) Multicellularity and the functional interdependence of motility and molecular transport. Proceedings of the National Academy of Sciences of the USA, 103, 1353-1358.
63. Squires K.D., Yamazaki H. (1995) Preferential concentration of marine particles in isotropic turbulence. Deep-Sea Research, 42, 1989-2004.
64. Tallapragada P, Ross S.D. (2008) Particle segregation by Stokes number for small neutrally buoyant spheres in a fluid. arXiv:0801.3489v2 [nlin.CD] 12 Mar 2008.
65. Taylor G.I. (1921) Diffusion by continuous movements. Proceedings of the London Mathematical Society, 20, 196-211.
66. Tennekes H., Lumley J.L. (1972) A First Course in Turbulence. MIT Press, Cambridge, MA.
67. Terray E.A., Donelan M.A., Agrawal Y.C., Drennan W.M., Kahma K.K., Williams A.J., Hwang P.A., Kitaigorodskii S.A. (1996) Estimates of kinetic energy dissipation under breaking waves. Journal of Physical Oceanography, 26, 792-807.
68. Thomas W.H., Gibson C.H. (1990) Quantified small-scale turbulence inhibits a red tide dinoflagellate, Gonyaulax polyedra Stein. Deep-Sea Research, 37, 1583-1593.
69. Thorpe S.A. (2007) Introduction to Ocean Turbulence. Cambridge University Press, Cambridge.
70. Tisalius P., Kuylenstierna B. (1996) Growth and decline of a diatom spring bloom [sic., punctuation missing] phytoplankton species composition, formation of marine snow and the role of heterotrophic dinoflagellates. Journal of Plankton Research, 181, 133-155.
71. Tseng R.S., D'Asaro E. (2004) Measurements of turbulent vertical kinetic energy in the ocean mixed layer from Lagrangian floats. Journal of Physical Oceanography, 34, 1984-1990.
72. Vaillancourt P.A., Yau M.K. (2000) Review of particle-turbulence interactions and consequences for cloud physics. Bulletin of the American Meteorological Society, 81, 285-298.
73. Viitasalo M., Kiørboe T., Flinkman J., Pedersen L., Visser A. (1998) Predation vulnerability of planktonic copepods: Consequences of predator foraging strategies and prey sensory abilities. Marine Ecology Progress Series, 175, 129-142.
74. Visser A.W., MacKenzie B.R. (1998) Turbulence-induced contact rates of plankton: The question of scale. Marine Ecology Progress Series, 166, 307-310.
75. Warnaars T.A., Hondzo M. (2006) Small-scale fluid motion mediates growth and nutrient uptake of Selenastrum capricornutum. Freshwater Biology, 51, 999-1015.
76. Wu J.-Z., Ma H.-Y., Zhou M.-D. (2006) Vorticity and Vortex Dynamics. Springer, Berlin.
77. Yamazaki H. (1993) Lagrangian study of planktonic organisms: perspectives. Bulletin of Marine Science, 53, 265-278.
78. Yokokawa M., Itakura K., Uno A., Ishihara T., Kaneda Y. (2002) 16.4-Tflops Direct Numerical Simulation of Turbulence by a Fourier Spectral Method on the Earth Simulator. SC2002, Baltimore, MD. 0-7695-1524-X/02