메뉴 건너뛰기




Volumn 25, Issue 10, 2009, Pages 1287-1292

A method and program for estimating graphical models for linkage disequilibrium that scale linearly with the number of loci, and their application to gene drop simulation

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; COMPUTER ANALYSIS; COMPUTER GRAPHICS; COMPUTER MODEL; COMPUTER PROGRAM; COMPUTER SIMULATION; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENOME ANALYSIS; INFORMATION PROCESSING; INTERNET; LINEAR SYSTEM; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 65549105499     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp146     Document Type: Article
Times cited : (9)

References (21)
  • 1
    • 0036338150 scopus 로고    scopus 로고
    • Merlin - rapid analysis of dense genetic maps using sparse gene flow trees
    • Abecasis,G.R. et al. (2001) Merlin - rapid analysis of dense genetic maps using sparse gene flow trees. Nat. Genet., 30, 97-101.
    • (2001) Nat. Genet , vol.30 , pp. 97-101
    • Abecasis, G.R.1
  • 3
    • 15944399178 scopus 로고    scopus 로고
    • Sparse graphical models for exploring gene expression data
    • Dobra,A. et al. (2003) Sparse graphical models for exploring gene expression data. J. Multivar. Anal., 90, 196-212.
    • (2003) J. Multivar. Anal , vol.90 , pp. 196-212
    • Dobra, A.1
  • 4
    • 0001099335 scopus 로고    scopus 로고
    • Decomposable graphical Gaussian model determination
    • Giudici,P. and Green,P.J. (1999) Decomposable graphical Gaussian model determination. Biometrika, 86, 785-801.
    • (1999) Biometrika , vol.86 , pp. 785-801
    • Giudici, P.1    Green, P.J.2
  • 6
    • 13844302126 scopus 로고    scopus 로고
    • High density linkage disequilibrium mapping using models of haplotype block variation
    • Greenspan,G. and Geiger,D. (2004) High density linkage disequilibrium mapping using models of haplotype block variation. Biomformatics, 20 (Suppl. 1), i137-i144.
    • (2004) Biomformatics , vol.20 , Issue.SUPPL. 1
    • Greenspan, G.1    Geiger, D.2
  • 7
    • 0000857850 scopus 로고
    • BIFROST - block recursive models induced from relevant knowledge, observations, and statistical techniques
    • Hojsgaard,S. and Thiesson,B. (1995) BIFROST - block recursive models induced from relevant knowledge, observations, and statistical techniques. Comput. Stat. Data Anal., 19, 155-175.
    • (1995) Comput. Stat. Data Anal , vol.19 , pp. 155-175
    • Hojsgaard, S.1    Thiesson, B.2
  • 8
    • 20144364427 scopus 로고    scopus 로고
    • Experiments in stochastic cornpuation for high-dimensional graphical models
    • Jones,B. et al. (2005) Experiments in stochastic cornpuation for high-dimensional graphical models. Stat. Sci., 20, 388-400.
    • (2005) Stat. Sci , vol.20 , pp. 388-400
    • Jones, B.1
  • 9
    • 0004278712 scopus 로고
    • Optimization by simulated annealing
    • 9353, IBM, Yorktown Heights
    • Kirkpatrick,S. et al. (1982) Optimization by simulated annealing. Technical Report RC 9353, IBM, Yorktown Heights.
    • (1982) Technical Report RC
    • Kirkpatrick, S.1
  • 10
    • 44649093326 scopus 로고    scopus 로고
    • A SNP streak model for the identification of genetic regions identical-by-descent
    • Leibon,G. et al. (2008) A SNP streak model for the identification of genetic regions identical-by-descent. Star. Appl. Genet. Mol. Biol., 7, 16.
    • (2008) Star. Appl. Genet. Mol. Biol , vol.7 , pp. 16
    • Leibon, G.1
  • 11
    • 84987216258 scopus 로고
    • Pedigree analysis by computer simulation
    • MacCluer,J.W. et al. (1986) Pedigree analysis by computer simulation. Zoo Biol., 5, 147-160.
    • (1986) Zoo Biol , vol.5 , pp. 147-160
    • MacCluer, J.W.1
  • 12
    • 5744249209 scopus 로고
    • Equations of state calculations by fast computing machines
    • Metropolis,N. et al. (1953) Equations of state calculations by fast computing machines. J. Chem. Phys., 21, 1087-1091.
    • (1953) J. Chem. Phys , vol.21 , pp. 1087-1091
    • Metropolis, N.1
  • 13
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • Scheet,P. and Stephens,M. (2006) A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet., 78 629-644.
    • (2006) Am. J. Hum. Genet , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 14
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwarz,G. (1978) Estimating the dimension of a model. Ann. Stat., 6, 461-464.
    • (1978) Ann. Stat , vol.6 , pp. 461-464
    • Schwarz, G.1
  • 15
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium
    • The International HapMap Consortium (2005) A haplotype map of the human genome. Nature, 437, 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 16
    • 21344454198 scopus 로고    scopus 로고
    • Characterizing allelic associations from unphased diploid data by graphical modeling
    • Thomas,A. (2005) Characterizing allelic associations from unphased diploid data by graphical modeling. Genet. Epidemiol., 29, 23-35.
    • (2005) Genet. Epidemiol , vol.29 , pp. 23-35
    • Thomas, A.1
  • 17
    • 34247578013 scopus 로고    scopus 로고
    • Towards linkage analysis with markers in linkage disequilibrium
    • Thomas,A. (2007) Towards linkage analysis with markers in linkage disequilibrium. Hum. Hered., 64, 16-26.
    • (2007) Hum. Hered , vol.64 , pp. 16-26
    • Thomas, A.1
  • 18
    • 60349088003 scopus 로고    scopus 로고
    • Estimation of graphical models whose conditional independence graphs are interval graphs and its application to modeling linkage disequilibrium
    • Thomas,A. (2009) Estimation of graphical models whose conditional independence graphs are interval graphs and its application to modeling linkage disequilibrium. Comput. Stat. Data Anal., 53, 1818-1828.
    • (2009) Comput. Stat. Data Anal , vol.53 , pp. 1818-1828
    • Thomas, A.1
  • 19
    • 2442713792 scopus 로고    scopus 로고
    • Graphical modeling ofthe joint distribution of alleles at associated loci
    • Thomas,A. and Camp,N.J. (2004) Graphical modeling ofthe joint distribution of alleles at associated loci. Am. J. Hum. Genet., 74, 1088-1101.
    • (2004) Am. J. Hum. Genet , vol.74 , pp. 1088-1101
    • Thomas, A.1    Camp, N.J.2
  • 20
    • 38949189981 scopus 로고    scopus 로고
    • Shared genomic segment analysis. Mapping disease predisposition genes in extended pedigrees using SNP genotype assays
    • Thomas,A. et al. (2008) Shared genomic segment analysis. Mapping disease predisposition genes in extended pedigrees using SNP genotype assays. Ann. Hum. Genet., 72, 279-287.
    • (2008) Ann. Hum. Genet , vol.72 , pp. 279-287
    • Thomas, A.1
  • 21
    • 33745276855 scopus 로고    scopus 로고
    • Bayesian graphical models for genomewide association studies
    • Verzilli,C.J. et al. (2006) Bayesian graphical models for genomewide association studies. Am. J. Hum. Genet., 79, 100-112.
    • (2006) Am. J. Hum. Genet , vol.79 , pp. 100-112
    • Verzilli, C.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.