메뉴 건너뛰기




Volumn 9, Issue , 2009, Pages

Structural pattern matching of nonribosomal peptides

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; DATA BASE; NONRIBOSOMAL PEPTIDE SYNTHESIS; PROTEIN DETERMINATION; PROTEIN STRUCTURE; SYSTEM ANALYSIS; CHEMISTRY; COMPUTER INTERFACE; INTERNET; PROTEIN CONFORMATION; PROTEIN DATABASE;

EID: 65449186582     PISSN: None     EISSN: 14726807     Source Type: Journal    
DOI: 10.1186/1472-6807-9-15     Document Type: Article
Times cited : (17)

References (21)
  • 1
    • 14844362054 scopus 로고    scopus 로고
    • Molecular mechanisms underlying nonribosomal peptide synthesis: Approaches to new antibiotics
    • 10.1021/cr0301191 15700962
    • Molecular mechanisms underlying nonribosomal peptide synthesis: approaches to new antibiotics. SA Sieber MA Marahiel, Chem Rev 2005 105 2 715 738 10.1021/cr0301191 15700962
    • (2005) Chem Rev , vol.105 , Issue.2 , pp. 715-738
    • Sieber, S.A.1    Marahiel, M.A.2
  • 2
    • 34250704344 scopus 로고    scopus 로고
    • Combinatorial biosynthesis for drug development
    • DOI 10.1016/j.mib.2007.05.005, PII S1369527407000525
    • Combinatorial biosynthesis for drug development. HG Menzella CD Reeves, Curr Opin Microbiol 2007 10 3 238 245 10.1016/j.mib.2007.05.005 17553731 (Pubitemid 46963082)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.3 , pp. 238-245
    • Menzella, H.G.1    Reeves, C.D.2
  • 3
    • 0033179468 scopus 로고    scopus 로고
    • The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases
    • DOI 10.1016/S1074-5521(99)80082-9
    • The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases. T Stachelhaus HD Mootz MA Marahiel, Chem Biol 1999 6 8 493 505 10.1016/S1074-5521(99)80082-9 10421756 (Pubitemid 29380764)
    • (1999) Chemistry and Biology , vol.6 , Issue.8 , pp. 493-505
    • Stachelhaus, T.1    Mootz, H.D.2    Marahiel, M.A.3
  • 4
    • 0034013269 scopus 로고    scopus 로고
    • Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains
    • DOI 10.1016/S1074-5521(00)00091-0
    • Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains. GL Challis J Ravel CA Townsend, Chem Biol 2000 7 3 211 224 10.1016/S1074-5521(00)00091-0 10712928 (Pubitemid 30147205)
    • (2000) Chemistry and Biology , vol.7 , Issue.3 , pp. 211-224
    • Challis, G.L.1    Ravel, J.2    Townsend, C.A.3
  • 5
    • 3442896886 scopus 로고    scopus 로고
    • NRPS-PKS: A knowledge-based resource for analysis of NRPS-PKS megasynthases
    • DOI 10.1093/nar/gkh359
    • NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases. MZ Ansari G Yadav RS Gokhale D Mohanty, Nucleic Acids Res 2004 32 Web Server W405 413 15215420 10.1093/nar/gkh359 (Pubitemid 39004076)
    • (2004) Nucleic Acids Research , vol.32 , Issue.WEB SERVER ISS.
    • Ansari, M.Z.1    Yadav, G.2    Gokhale, R.S.3    Mohanty, D.4
  • 6
    • 26944502019 scopus 로고    scopus 로고
    • Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs)
    • DOI 10.1093/nar/gki885
    • Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs). C Rausch T Weber O Kohlbacher W Wohlleben DH Huson, Nucleic Acids Res 2005 33 18 5799 5808 16221976 10.1093/nar/gki885 (Pubitemid 41742599)
    • (2005) Nucleic Acids Research , vol.33 , Issue.18 , pp. 5799-5808
    • Rausch, C.1    Weber, T.2    Kohlbacher, O.3    Wohlleben, W.4    Huson, D.H.5
  • 8
    • 0035685324 scopus 로고    scopus 로고
    • Cloning, sequencing, and characterization of the iturin A operon
    • DOI 10.1128/JB.183.21.6265-6273.2001
    • Cloning, sequencing, and characterization of the iturin A operon. K Tsuge T Akiyama M Shoda, J Bacteriol 2001 183 21 6265 6273 11591669 10.1128/JB.183.21.6265-6273.2001 (Pubitemid 34059398)
    • (2001) Journal of Bacteriology , vol.183 , Issue.21 , pp. 6265-6273
    • Tsuge, K.1    Akiyama, T.2    Shoda, M.3
  • 9
    • 34247279292 scopus 로고    scopus 로고
    • Comprehensive Analysis of Distinctive Polyketide and Nonribosomal Peptide Structural Motifs Encoded in Microbial Genomes
    • DOI 10.1016/j.jmb.2007.02.099, PII S0022283607003026
    • Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes. Y Minowa M Araki M Kanehisa, J Mol Biol 2007 368 5 1500 1517 10.1016/j.jmb.2007.02.099 17400247 (Pubitemid 46617597)
    • (2007) Journal of Molecular Biology , vol.368 , Issue.5 , pp. 1500-1517
    • Minowa, Y.1    Araki, M.2    Kanehisa, M.3
  • 10
    • 0036905773 scopus 로고    scopus 로고
    • Ways of assembling complex natural products on modular nonribosomal peptide synthetases
    • DOI 10.1002/1439-7633(20020603)3:6<490::AID-CBIC490>3.0.CO;2-N
    • Ways of assembling complex natural products on modular nonribosomal peptide synthetases. HD Mootz D Schwarzer MA Marahiel, Chembiochem 2002 3 6 490 504 10.1002/1439-7633(20020603)3:6<490::AID-CBIC490>3.0.CO;2-N 12325005 (Pubitemid 36002311)
    • (2002) ChemBioChem , vol.3 , Issue.6 , pp. 490-504
    • Mootz, H.D.1    Schwarzer, D.2    Marahiel, M.A.3
  • 11
    • 0032484013 scopus 로고    scopus 로고
    • Characterization of the syringomycin synthetase gene cluster: A link between prokaryotic and eukaryotic peptide synthetases
    • DOI 10.1074/jbc.273.49.32857
    • Characterization of the syringomycin synthetase gene cluster. A link between prokaryotic and eukaryotic peptide synthetases. E Guenzi G Galli I Grgurina DC Gross G Grandi, J Biol Chem 1998 273 49 32857 32863 10.1074/jbc.273.49.32857 9830033 (Pubitemid 28557675)
    • (1998) Journal of Biological Chemistry , vol.273 , Issue.49 , pp. 32857-32863
    • Guenzi, E.1    Galli, G.2    Grgurina, I.3    Gross, D.C.4    Grandi, G.5
  • 14
    • 0036663707 scopus 로고    scopus 로고
    • Maximum common subgraph isomorphism algorithms for the matching of chemical structures
    • DOI 10.1023/A:1021271615909
    • Maximum common subgraph isomorphism algorithms for the matching of chemical structures. JW Raymond P Willett, J Comput Aided Mol Des 2002 16 7 521 533 10.1023/A:1021271615909 12510884 (Pubitemid 36013605)
    • (2002) Journal of Computer-Aided Molecular Design , vol.16 , Issue.7 , pp. 521-533
    • Raymond, J.W.1    Willett, P.2
  • 15
    • 0021763214 scopus 로고
    • IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN). Nomenclature and symbolism for amino acids and peptides. Recommendations 1983
    • 6743224
    • IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN). Nomenclature and symbolism for amino acids and peptides. Recommendations 1983. IUPAC, IUB, Biochem J 1984 219 2 345 373 6743224
    • (1984) Biochem J , vol.219 , Issue.2 , pp. 345-373
    • Iupac I. .U., .B.1
  • 17
    • 33845291462 scopus 로고    scopus 로고
    • Nonribosomal peptide synthetase (NPS) genes in Fusarium graminearum, F. culmorum and F. pseudograminearium and identification of NPS2 as the producer of ferricrocin
    • 10.1007/s00294-006-0103-0 17043871
    • Nonribosomal peptide synthetase (NPS) genes in Fusarium graminearum, F. culmorum and F. pseudograminearium and identification of NPS2 as the producer of ferricrocin. C Tobiasen J Aahman KS Ravnholt MJ Bjerrum MN Grell H Giese, Curr Genet 2007 51 1 43 58 10.1007/s00294-006-0103-0 17043871
    • (2007) Curr Genet , vol.51 , Issue.1 , pp. 43-58
    • Tobiasen, C.1    Aahman, J.2    Ravnholt, K.S.3    Bjerrum, M.J.4    Grell, M.N.5    Giese, H.6
  • 18
    • 33846069299 scopus 로고    scopus 로고
    • Genome-based discovery, structure prediction and functional analysis of cyclic lipopeptide antibiotics in Pseudomonas species
    • DOI 10.1111/j.1365-2958.2006.05525.x
    • Genome-based discovery, structure prediction and functional analysis of cyclic lipopeptide antibiotics in Pseudomonas species. I de Bruijn MJ de Kock M Yang P de Waard TA van Beek JM Raaijmakers, Mol Microbiol 2007 63 2 417 428 10.1111/j.1365-2958.2006.05525.x 17241198 (Pubitemid 46058929)
    • (2007) Molecular Microbiology , vol.63 , Issue.2 , pp. 417-428
    • De Bruijn, I.1    De Kock, M.J.D.2    Yang, M.3    De Waard, P.4    Van Beek, T.A.5    Raaijmakers, J.M.6
  • 19
    • 65449120841 scopus 로고    scopus 로고
    • UniProtKB. http://www.uniprot.org/
    • UniProtKB
  • 20
    • 33745739597 scopus 로고    scopus 로고
    • Cyclic lipopeptide production by plant-associated Pseudomonas spp.: Diversity, activity, biosynthesis, and regulation
    • 10.1094/MPMI-19-0699 16838783
    • Cyclic lipopeptide production by plant-associated Pseudomonas spp.: diversity, activity, biosynthesis, and regulation. JM Raaijmakers I de Bruijn MJ de Kock, Mol Plant Microbe Interact 2006 19 7 699 710 10.1094/MPMI-19-0699 16838783
    • (2006) Mol Plant Microbe Interact , vol.19 , Issue.7 , pp. 699-710
    • Raaijmakers, J.M.1    De Bruijn, I.2    De Kock, M.J.3
  • 21
    • 65449158164 scopus 로고    scopus 로고
    • Norine. http://bioinfo.lifl.fr/norine/
    • Norine


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.