Molecular determinants for interfacial binding and conformational change in a soluble diacylglycerol kinase

Journal of Biological Chemistry

Volumn 284, Issue 11, 2009, Pages 7246-7254

  Jerga, Agoston ^a   Miller, Darcia J ^a   White, Stephen W ^a   Rock, Charles O ^a,b  

^a ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

^b NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVE SITE; ANIONIC PHOSPHOLIPIDS; ASPARTATE; ATP BINDING; BINDING ASSAYS; CATALYTIC CORE; CONFORMATIONAL CHANGE; DIACYLGLYCEROL; DIACYLGLYCEROL KINASE; DIVALENT CATION; GRAM-POSITIVE PATHOGENS; HIGH AFFINITY; INTERFACIAL BINDING; MAMMALIAN ENZYMES; MEMBRANE LIPIDS; MOLECULAR DETERMINANTS; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID BILAYER; PHOSPHOLIPID VESICLES; POSITIVELY CHARGED; SEQUENCE CONSERVATION; SUBSTRATE BINDING DOMAIN; SURFACE RESIDUES; WATER NETWORKS;

BINDING ENERGY; ENZYMES; GLYCEROL; LIPOSOMES; MAMMALS; PHOSPHOLIPIDS;

BINDING SITES;

ADENOSINE TRIPHOSPHATE; ARGININE; ASPARTIC ACID; DIACYLGLYCEROL KINASE; DIACYLGLYCEROL KINASE B; LYSINE; MAGNESIUM ION; PHOSPHATIDYLGLYCEROL; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; MAGNESIUM;

ARTICLE; BINDING AFFINITY; BINDING SITE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME BINDING; ENZYME CONFORMATION; ENZYME STRUCTURE; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN LIPID INTERACTION; CELL MEMBRANE; CHEMISTRY; ENZYME ACTIVE SITE; ENZYMOLOGY; GENETICS; LIPID BILAYER; METABOLISM; MUTATION; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE; STAPHYLOCOCCUS AUREUS;

MAMMALIA; POSIBACTERIA; RUMEX;

ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEINS; CATALYTIC DOMAIN; CELL MEMBRANE; DIACYLGLYCEROL KINASE; LIPID BILAYERS; MAGNESIUM; MUTATION; PHOSPHATIDYLGLYCEROLS; PROTEIN STRUCTURE, TERTIARY; STAPHYLOCOCCUS AUREUS;

EID: 65449154391     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M805962200     Document Type: Article

References (41)

1. Merida, L, Avila-Flores, A., and Merino, E. (2008) Biochem. J. 409, 1-18
2. Sakane, F., Shin-ichi, I., Masahiro, K., Satoshi, Y., and Hideo, K. (2007) Biochim. Biophys. Acta 1771, 793- 806
3. Jerga, A., Lu, Y.-J., Schujman, G. E., de Mendoza, D., and Rock, C. O. (2007) J. Biol. Chem. 282, 21738-21745
4. Winget, J. M., Pan, Y. H., and Bahnson, B. J. (2006) Biochim. Biophys. Acta 1761, 1260-1269
5. Jain, M. K., and Berg, O. G. (2006) Curr. Opin. Chem. Biol. 10, 473-479
6. Feng, J., Wehbi, H., and Roberts, M. F. (2002) J. Biol. Chem. 277, 19867-19875
7. Shao, C., Shi, X., Wehbi, H., Zambonelli, C., Head, J. F., Seaton, B. A., and Roberts, M. F. (2007) J. Biol. Chem. 282, 9228 -9235
8. Zhang, X., Wehbi, H., and Roberts, M. F. (2004) J. Biol, Chem. 279, 20490-20500
9. Scott, D. L., White, S. P., Otwinowski, Z., Yuan, W., Gelb, M. H., and Sigler, P. B. (1990) Science 250, 1541-1546
10. White, S. P., Scott, D. L., Otwinowski, Z., Gelb, M. H., and Sigler, P. B. (1990) Science 250, 1560-1563
11. Brunie, S., Bolin, J., Gewirth, D., and Sigler, P. B. (1985) J. Biol. Chem. 260, 9742-9749
12. Thunnissen, M. M., Ab, E., Kalk, K. H., Drenth, J., Dijkstra, B. W., Kuipers, O. P., Dijkman, R., de Haas, G. H., and Verheij, H. M. (1990) Nature 347, 689-691
13. Scott, D. L., Otwinowski, Z., Gelb, M. H., and Sigler, P. B. (1990) Science 250, 1563-1566
14. Heinz, D. W., Ryan, M., Bullock, T. L., and Griffith, 0. H. (1995) EMBO J. 14, 3855-3863
15. Tatulian, S. A., Biltonen, R. L., and Tamm, L. K. (1997) J. Mol. Biol. 268, 809-815
16. van den Berg, B., Tessari, M., Boelens, R., Dijkman, R., de Haas, G. H., Kaptein, R., and Verheij, H. M. (1995) Nat. Struct. Biol. 2, 402-406
17. Guo, S., Zhang, X., Seaton, B. A., and Roberts, M. F. (2008) Biochemistry 47, 4201-4210
18. Feng, J., Bradley, W. D., and Roberts, M. F. (2003) J. Biol. Chem. 278, 24651-24657
19. Miller, D. J., Jerga, A., Rock, C. O., and White, S. W. (2008) Structure 16, 1036-1046
20. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254
21. Ullman, E. F., Kirakossian, H., Singh, S., Wu, Z. P., Irvin, B. R., Pease, J. S., Switchenko, A. C., Irvine, J. D., Dafforn, A., Skold, C. N., and Wagner, D. B. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 5426-5430
22. Ullman, E. F., Kirakossian, H., Switchenko, A. C., Ishkanian, J., Ericson, M., Wartchow, C. A., Pirio, M., Pease, J., Irvin, B. R., Singh, S., Singh, R., Patel, R., Dafforn, A., Davalian, D., Skold, C., Kurn, N., and Wagner, D. B. (1996) Clin. Chem. 42, 1518-1526
23. Stokka, A. J., Gesellchen, F., Carlson, C. R., Scott, J. D., Herberg, F. W., and Tasken, K. (2006) Biochem. J. 400, 493-499
24. Lazar, G. A., Dang, W., Karki, S., Vafa, O., Peng, J. S., Hyun, L., Chan, C., Chung, H. S., Eivazi, A., Yoder, S. C., Vielmetter, J., Carmichael, D. F., Hayes, R. J., and Dahiyat, B. I. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 4005-4010
25. Thomas, W. E., and Glomset, J. A. (1999) Biochemistry 38, 3320-3326
26. Niesen, F. H., Berglund, H., and Vedadi, M. (2007) Nat. Protoc. 2, 2212-2221
27. Anderson, K. S., Sikorski, J. A., and Johnson, K. A. (1988) Biochemistry 27, 1604-1610
28. Walsh, J. P., and Bell, R. M. (1986) J. Biol. Chem. 261, 6239-6247
29. Abe, T., Lu, X., Jiang, Y., Boccone, C. E., Qian, S., Vattem, K. M., Wek, R. C., and Walsh, J. P. (2003) Biochem. J. 375, 673-680
30. White, D. C., and Frerman, F. E. (1967) J. Bacteriol. 94, 1854-1867
31. Nichols, C. E., Lamb, H. K., Lockyer, M., Charles, I. G., Pyne, S., Hawkins, A. R., and Stammers, D. K. (2007) Proteins 68, 13-25
32. Royer, C. A. (2006) Chem. Rev. 106, 1769-1784
33. Liu, J., Lou, Y., Yokota, H., Adams, P. D., Kim, R., and Kim, S. H. (2005) J. Mol. Biol. 354, 289-303
34. Suhre, K., and Sanejouand, Y. H. (2004) Nucleic Acids Res. 32, W610-W614
35. Taylor, S. S., Buechler, J. A., and Yonemoto, W. (1990) Annu. Rev. Biochem. 59, 971-1005
36. Koshland, D. E., Jr. (1970) in The Enzymes (Boyer, P. D., ed) pp. 341-396, Academic Press, New York
37. Fanani, M. L., Topham, M. K., Walsh, J. P., and Epand, R. M. (2004) Biochemistry 43, 14767-14777
38. Sakane, F., Kai, M., Wada, I., Imai, S., and Kanoh, H. (1996) Biochem. J. 318, 583-590
39. Thirugnanam, S., Topham, M. K., and Epand, R. M. (2001) Biochemistry 40, 10607-10613
40. Tu-Sekine, B., Ostroski, M., and Raben, D. M. (2007) Biochemistry 46, 924-932
41. Saccani, J., Castano, S., Beaurain, F., Laguerre, M., and Desbat, B. (2004) Langmuir 20, 9190-9197