Copy number variation in African Americans

BMC Genetics

Volumn 10, Issue , 2009, Pages

  McElroy, Joseph P ^a   Nelson, Matthew R ^b   Caillier, Stacy J ^a   Oksenberg, Jorge R ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b GLAXOSMITHKLINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANKYRIN; COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR; DNA;

AFRICAN AMERICAN; ARTICLE; ARTIFACT; CELL LINE; CHROMOSOME 15Q; CHROMOSOME 17Q; CONTROLLED STUDY; DNA DETERMINATION; FEMALE; GENE DUPLICATION; GENE FREQUENCY; GENE MAPPING; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; HUMAN CELL; NORMAL HUMAN; POLYMERASE CHAIN REACTION; POPULATION GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM; CAUCASIAN; CHROMOSOME MAP; DNA MICROARRAY; DNA SEQUENCE; GENE DOSAGE; GENETICS; HUMAN GENOME; MALE; REPRODUCIBILITY;

AFRICAN AMERICANS; CHROMOSOME MAPPING; EUROPEAN CONTINENTAL ANCESTRY GROUP; FEMALE; GENE DOSAGE; GENETIC VARIATION; GENETICS, POPULATION; GENOME, HUMAN; HUMANS; MALE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMORPHISM, SINGLE NUCLEOTIDE; REPRODUCIBILITY OF RESULTS; SEQUENCE ANALYSIS, DNA;

EID: 65449151949     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-10-15     Document Type: Article

References (21)

1. Redon R Ishikawa S Fitch KR Feuk L Perry GH Andrews TD Fiegler H Shapero MH Carson AR Chen W et al Global variation in copy number in the human genome Nature 2006, 444(7118):444-454 10.1038/nature05329 17122850 2669898
2. Iafrate AJ Feuk L Rivera MN Listewnik ML Donahoe PK Qi Y Scherer SW Lee C Detection of large-scale variation in the human genome Nat Genet 2004, 36(9):949-951 10.1038/ng1416 15286789
3. Freeman JL Perry GH Feuk L Redon R McCarroll SA Altshuler DM Aburatani H Jones KW Tyler-Smith C Hurles ME et al Copy number variation: New insights in genome diversity Genome Res 2006, 16(8):949-961 10.1101/ gr.3677206 16809666
4. Feuk L Marshall CR Wintle RF Scherer SW Structural variants: Changing the landscape of chromosomes and design of disease studies Hum Mol Genet 2006. 15(Spec No 1):R57-66 10.1093/hmg/ddl057 16651370
5. Pinto D Marshall C Feuk L Scherer SW Copy-number variation in control population cohorts Hum Mol Genet 2007, 16(Spec No 2):R168-173 10.1093/ hmg/ddm241 17911159
6. Conrad DF Andrews TD Carter NP Hurles ME Pritchard JK A high-resolution survey of deletion polymorphism in the human genome Nat Genet 2006, 38(1):75-81 10.1038/ng1697 16327808
7. Locke DP Sharp AJ McCarroll SA McGrath SD Newman TL Cheng Z Schwartz S Albertson DG Pinkel D Altshuler DM et al Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome Am J Hum Genet 2006, 79(2):275-290 1559496 16826518 10.1086/505653
8. McCarroll SA Hadnott TN Perry GH Sabeti PC Zody MC Barrett JC Dallaire S Gabriel SB Lee C Daly MJ et al Common deletion polymorphisms in the human genome Nat Genet 2006, 38(1):86-92 10.1038/ng1696 16468122
9. Sebat J Lakshmi B Troge J Alexander J Young J Lundin P Maner S Massa H Walker M Chi M et al Large-scale copy number polymorphism in the human genome Science 2004, 305(5683):525-528 10.1126/science.1098918 15273396
10. Sharp AJ Locke DP McGrath SD Cheng Z Bailey JA Vallente RU Pertz LM Clark RA Schwartz S Segraves R et al Segmental duplications and copy-number variation in the human genome Am J Hum Genet 2005, 77(1):78-88 1226196 15918152 10.1086/431652
11. Tuzun E Sharp AJ Bailey JA Kaul R Morrison VA Pertz LM Haugen E Hayden H Albertson D Pinkel D et al Fine-scale structural variation of the human genome Nat Genet 2005, 37(7):727-732 10.1038/ng1562 15895083
12. Nelson MR Bryc K King KS Indap A Boyko AR Novembre J Briley LP Maruyama Y Waterworth DM Waeber G et al The Population Reference Sample, POPRES: a resource for population, disease, and pharmacological genetics research Am J Hum Genet 2008, 83(3):347-358 10.1016/j.ajhg.2008.08.005 18760391 2556436
13. Patterson N Hattangadi N Lane B Lohmueller KE Hafler DA Oksenberg JR Hauser SL Smith MW O'Brien SJ Altshuler D et al Methods for high-density admixture mapping of disease genes Am J Hum Genet 2004, 74(5):979-1000 1181990 15088269 10.1086/420871
14. Caillier SJ Briggs F Cree BA Baranzini SE Fernandez-Vina M Ramsay PP Khan O Royal W 3rd Hauser SL Barcellos LF et al Uncoupling the roles of HLA-DRB1 and HLA-DRB5 genes in multiple sclerosis J Immunol 2008, 181(8):5473-5480 18832704
15. Olshen AB Venkatraman ES Lucito R Wigler M Circular binary segmentation for the analysis of array-based DNA copy number data Biostatistics 2004, 5(4):557-572 10.1093/biostatistics/kxh008 15475419
16. Benjamini Y Hochberg Y Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing Journal of the Royal Statistical Society Series B 1995, 57(1):289-300
17. Jeon JP Shim SM Nam HY Baik SY Kim JW Han BG Copy number increase of 1p36.33 and mitochondrial genome amplification in Epstein-Barr virus-transformed lymphoblastoid cell lines Cancer Genet Cytogenet 2007, 173(2):122-130 10.1016/j.cancergencyto.2006.10.010 17321327
18. de Bustos C Diaz de Stahl T Piotrowski A Mantripragada KK Buckley PG Darai E Hansson CM Grigelionis G Menzel U Dumanski JP Analysis of copy number variation in the normal human population within a region containing complex segmental duplications on 22q11 using high-resolution array-CGH Genomics 2006, 88(2):152-162 10.1016/j.ygeno.2006.03.016 16713171
19. Simon-Sanchez J Scholz S Fung HC Matarin M Hernandez D Gibbs JR Britton A de Vrieze FW Peckham E Gwinn-Hardy K et al Genome-wide SNP assay reveals structural genomic variation, extended homozygosity and cell-line induced alterations in normal individuals Hum Mol Genet 2007, 16(1):1-14 10.1093/hmg/ddl436 17116639
20. Sharp AJ Hansen S Selzer RR Cheng Z Regan R Hurst JA Stewart H Price SM Blair E Hennekam RC et al Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome Nat Genet 2006, 38(9):1038-1042 10.1038/ng1862 16906162
21. Pennisi E Genetics. 17q21.31: Not your average genomic address Science 2008, 322(5903):842-845 10.1126/science.322.5903.842 18988819