Copy number increase of 1p36.33 and mitochondrial genome amplification in Epstein-Barr virus-transformed lymphoblastoid cell lines

Cancer Genetics and Cytogenetics

Volumn 173, Issue 2, 2007, Pages 122-130

  Jeon, Jae Pil ^a   Shim, Sung Mi ^a   Nam, Hye Young ^a   Baik, Seung Youn ^a   Kim, Jun Woo ^a   Han, Bok Ghee ^a  

^a Korea Centers for Disease Control and Prevention   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; ARTIFICIAL CHROMOSOME; B LYMPHOCYTE; BIOGENESIS; CELL LEVEL; CHROMOSOME 1Q; CHROMOSOME ABERRATION; CHROMOSOME NUMBER; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; EPSTEIN BARR VIRUS; GENE EXPRESSION; HUMAN; HUMAN CELL; LYMPHOBLASTOID CELL LINE; LYMPHOCYTE TRANSFORMATION; MITOCHONDRIAL GENETICS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS;

ANEUPLOIDY; CELL LINE, TRANSFORMED; CELL TRANSFORMATION, VIRAL; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, HUMAN, PAIR 1; DNA, MITOCHONDRIAL; GENE AMPLIFICATION; GENE EXPRESSION; GENOME, HUMAN; HERPESVIRUS 4, HUMAN; HUMANS; LYMPHOCYTES; MICROARRAY ANALYSIS; MITOCHONDRIAL PROTEINS; NUCLEIC ACID HYBRIDIZATION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER;

BACTERIA (MICROORGANISMS); HUMAN HERPESVIRUS 4;

EID: 33847180205     PISSN: 01654608     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cancergencyto.2006.10.010     Document Type: Article

References (37)

1. Chang Y., Cheng S.D., and Tsai C.H. Chromosomal integration of Epstein-Barr virus genomes in nasopharyngeal carcinoma cells. Head Neck 24 (2002) 143-150
2. Gulley M.L., Raphael M., Lutz C.T., Ross D.W., and Raab-Traub N. Epstein-Barr virus integration in human lymphomas and lymphoid cell lines. Cancer 70 (1992) 185-191
3. Hurley E.A., Agger S., McNeil J.A., Lawrence J.B., Calendar A., Lenoir G., and Thorley-Lawson D.A. When Epstein-Barr virus persistently infects B-cell lines, it frequently integrates. J Virol 65 (1991) 1245-1254
4. Lestou V.S., De Braekeleer M., Strehl S., Ott G., Gadner H., and Ambros P.F. Non-random integration of Epstein-Barr virus in lymphoblastoid cell lines. Genes Chromosomes Cancer 8 (1993) 38-48
5. Luo W.J., Takakuwa T., Ham M.F., Wada N., Liu A., Fujita S., Sakane-Ishikawa E., and Aozasa K. Epstein-Barr virus is integrated between REL and BCL-11A in American Burkitt lymphoma cell line (NAB-2). Lab Invest 84 (2004) 1193-1199
6. Takakuwa T., Luo W.J., Ham M.F., Sakane-Ishikawa F., Wada N., and Aozasa K. Integration of Epstein-Barr virus into chromosome 6q15 of Burkitt lymphoma cell line (Raji) induces loss of BACH2 expression. Am J Pathol 164 (2004) 967-974
7. Wolf J., Jox A., Skarbek H., Pukrop T., Bartnitzke S., Pawlita M., Diehl V., and Bullerdiek J. Selective loss of integrated Epstein-Barr virus genomes after long-term cultivation of Burkitt's lymphoma × B-lymphoblastoid cell hybrids due to chromatin instability at the integration site. Virology 212 (1995) 179-185
8. Cougot D., Neuveut C., and Buendia M.A. HBV induced carcinogenesis. J Clin Virol 34 Suppl 1 (2005) S75-S78
9. Ricciardiello L., Baglioni M., Giovannini C., Pariali M., Cenacchi G., Ripalti A., Landini M.P., Sawa H., Nagashima K., Frisque R.J., Goel A., Boland C.R., Tognon M., Roda E., and Bazzoli F. Induction of chromosomal instability in colonic cells by the human polyomavirus JC virus. Cancer Res 63 (2003) 7256-7262
10. Sugimoto M., Tahara H., Ide T., and Furuichi Y. Steps involved in immortalization and tumorigenesis in human B-lymphoblastoid cell lines transformed by Epstein-Barr virus. Cancer Res 64 (2004) 3361-3364
11. Pinkel D., Segraves R., Sudar D., Clark S., Poole I., Kowbel D., Collins C., Kuo W.L., Chen C., Zhai Y., Dairkee S.H., Ljung B.M., Gray J.W., and Albertson D.G. High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat Genet 20 (1998) 207-211
12. Vauhkonen H., Vauhkonen M., Sajantila A., Sipponen P., and Knuutila S. DNA copy number aberrations in intestinal-type gastric cancer revealed by array-based comparative genomic hybridization. Cancer Genet Cytogenet 167 (2006) 150-154
13. van Ommen G.J. Frequency of new copy number variation in humans. [Letter]. Nat Genet 37 (2005) 333-334
14. Iafrate A.J., Feuk L., Rivera M.N., Listewnik M.L., Donahoe P.K., Qi Y., Scherer S.W., and Lee C. Detection of large-scale variation in the human genome. Nat Genet 36 (2004) 949-951
15. Sebat J., Lakshmi B., Troge J., Alexander J., Young J., Lundin P., Maner S., Massa H., Walker M., Chi M., Navin N., Lucito R., Healy J., Hicks J., Ye K., Reiner A., Gilliam T.C., Trask B., Patterson N., Zetterberg A., and Wigler M. Large-scale copy number polymorphism in the human genome. Science 305 (2004) 525-528
16. Ghazani A.A., Arneson N.C., Warren K., and Done S.J. Limited tissue fixation times and whole genomic amplification do not impact array CGH profiles. J Clin Pathol 59 (2006) 311-315
17. Hayashi S., Kurosawa K., Imoto I., Mizutani S., and Inazawa J. Detection of cryptic chromosome aberrations in a patient with a balanced t(1;9)(p34.2;p24) by array-based comparative genomic hybridization. Am J Med Genet A 139 (2005) 32-36
18. Hur D.Y., Lee M.H., Kim J.W., Kim J.H., Shin Y.K., Rho J.K., Kwack K.B., Lee W.J., and Han B.G. CD19 signalling improves the Epstein-Barr virus-induced immortalization of human B cell. Cell Prolif 38 (2005) 35-45
19. Cho Y.L., Bae S., Koo M.S., Kim K.M., Chun H.J., Kim C.K., Ro D.Y., Kim J.H., Lee C.H., Kim Y.W., and Ahn W.S. Array comparative genomic hybridization analysis of uterine leiomyosarcoma. Gynecol Oncol 99 (2005) 545-551
20. Levine R.L., Wadleigh M., Cools J., Ebert B.L., Wernig G., Huntly B.J., Boggon T.J., Wlodarska I., Clark J.J., Moore S., Adelsperger J., Koo S., Lee J.C., Gabriel S., Mercher T., D'Andrea A., Frohling S., Dohner K., Marynen P., Vandenberghe P., Mesa R.A., Tefferi A., Griffin J.D., Eck M.J., Sellers W.R., Meyerson M., Golub T.R., Lee S.J., and Gilliland D.G. Activating mutation in the tyrosine kinase JAK2 in polycythemia vera, essential thrombocythemia, and myeloid metaplasia with myelofibrosis. Cancer Cell 7 (2005) 387-397
21. Wilke K., Duman B., and Horst J. Diagnosis of haploidy and triploidy based on measurement of gene copy number by real-time PCR. Hum Mutat 16 (2000) 431-436
22. Herrnstadt C., Clevenger W., Ghosh S.S., Anderson C., Fahy E., Miller S., Howell N., and Davis R.E. A novel mitochondrial DNA-like sequence in the human nuclear genome. Genomics 60 (1999) 67-77
23. Ballif B.C., Kashork C.D., and Shaffer L.G. FISHing for mechanisms of cytogenetically defined terminal deletions using chromosome-specific subtelomeric probes. Eur J Hum Genet 8 (2000) 764-770
24. Heilstedt H.A., Ballif B.C., Howard L.A., Kashork C.D., and Shaffer L.G. Population data suggest deletions of 1p36 are a relatively common chromosome abnormality. Clin Genet 64 (2003) 310-316
25. Heilstedt H.A., Ballif B.C., Howard L.A., Lewis R.A., Stal S., Kashork C.D., Bacino C.A., Shapira S.K., and Shaffer L.G. Physical map of 1p36, placement of breakpoints in monosomy 1p36, and clinical characterization of the syndrome. Am J Hum Genet 72 (2003) 1200-1212
26. Shapira S.K., McCaskill C., Northrup H., Spikes A.S., Elder F.F.B., Sutton V.R., Korenberg J.R., Greenberg F., and Shaffer L.G. Chromosome 1p36 deletions: the clinical phenotype and molecular characterization of a common newly delineated syndrome. Am J Hum Genet 61 (1997) 642-650
27. Tonk V.S., Wilson G.N., Yatsenko S.A., Stankiewicz P., Lupski J.R., Schutt R.C., Northup J.K., and Velagaleti G.V. Molecular cytogenetic characterization of a familial der(1)del(1)(p36.33)dup(1)(p36.33p36.22) with variable phenotype. Am J Med Genet A 139 (2005) 136-140
28. Gajecka M., Yu W., Ballif B.C., Glotzbach C.D., Bailey K.A., Shaw C.A., Kashork C.D., Heilstedt H.A., Ansel D.A., Theisen A., Rice R., Rice D.P.C., and Shaffer L.G. Delineation of mechanisms and regions of dosage imbalance in complex rearrangements of 1p36 leads to a putative gene for regulation of cranial suture closure. Eur J Hum Genet 13 (2005) 139-149
29. Corral M., Baffet G., Kitzis A., Paris B., Tichonicky L., Kruh J., Guguen-Guillouzo C., and Defer N. DNA sequences homologous to mitochondrial genes in nuclei from normal rat tissues and from rat hepatoma cells. Biochem Biophys Res Commun 162 (1989) 258-264
30. Kamimura N., Ishii S., Ma L.D., and Shay J.W. Three separate mitochondrial DNA sequences are contiguous in human genomic DNA. J Mol Biol 210 (1989) 703-707
31. Parfait B., Rustin P., Munnich A., and Rotig A. Co-amplification of nuclear pseudogenes and assessment of heteroplasmy of mitochondrial DNA mutations. Biochem Biophys Res Commun 247 (1998) 57-59
32. Sorenson M.D., and Fleischer R.C. Multiple independent transpositions of mitochondrial DNA control region sequences to the nucleus. Proc Natl Acad Sci U S A 93 (1996) 15239-15243
33. Smith M.F., Thomas W.K., and Patton J.L. Mitochondrial DNA-like sequence in the nuclear genome of an akodontine rodent. Mol Biol Evol 9 (1992) 204-215
34. Collura R.V., and Stewart C.B. Insertions and duplications of mtDNA in the nuclear genomes of Old World monkeys and hominoids. Nature 378 (1995) 485-489
35. Carew J.S., Nawrocki S.T., Xu R.H., Dunner K., McConkey D.J., Wierda W.G., Keating M.J., and Huang P. Increased mitochondrial biogenesis in primary leukemia cells: the role of endogenous nitric oxide and impact on sensitivity to fludarabine. Leukemia 18 (2004) 1934-1940
36. Buckland P.R. Polymorphically duplicated genes: their relevance to phenotypic variation in humans. Ann Med 35 (2003) 308-315
37. Wilson G.M., Flibotte S., Chopra V., Melnyk B.L., Honer W.G., and Holt R.A. DNA copy-number analysis in bipolar disorder and schizophrenia reveals aberrations in genes involved in glutamate signaling. Hum Mol Genet 15 (2006) 743-749