Henriciella marina gen. nov., sp. nov., a novel member of the family Hyphomonadaceae isolated from the East Sea

Journal of Microbiology

Volumn 47, Issue 2, 2009, Pages 156-161

  Quail, Zhe Xue ^a,b   Zeng, Dan Ning ^a   Xiao, Yi Ping ^a   Roh, Seong Woon ^c   Nam, Young Do ^c   Chang, Ho Won ^b   Yoon, Jung Hoon ^b   Oh, Hee Mock ^b   Bae, Jin Woo ^b  

^a FUDAN UNIVERSITY   (China)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^c Kyung Hee University   (South Korea)

Author keywords

East Sea; Henriciella marina gen. nov.; Hyphomonadaceae; Sp. nov.; Taxonomy

Indexed keywords

BACTERIAL DNA; FATTY ACID; RIBOSOME DNA; RNA 16S; SEA WATER;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIUM IDENTIFICATION; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; KOREA; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY;

ALPHAPROTEOBACTERIA; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; KOREA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER;

BACTERIA (MICROORGANISMS); HYPHOMONADACEAE; HYPHOMONAS; NEGIBACTERIA;

EID: 65449141684     PISSN: 12258873     EISSN: 12258873     Source Type: Journal    
DOI: 10.1007/s12275-008-0290-0     Document Type: Article

References (24)

1. W.R. Abraham C. Strömpl A. Bennasar M. Vancanneyt C. Snauwaert J. Swings J. Smit E.R.B. Moore 2002 Phylogeny of Maricaulis Abraham et al. 11999 and proposal of Maricaulis virginensis sp. nov., M. parjimensis sp. nov., M. washingtonensis sp. nov. and M. salignorans sp. nov Int. J. Syst. Evol. Microbiol. 52 2191 2201 (Pubitemid 36004203)
2. W.R. Abraham C. Strömpl H. Meyer S. Lindholst E.R.B. Moore R. Christ M. Vancanneyt B.J. Tindall A. Bennasar J. Smit M. Tesar 1999 Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter Int. J. Syst. Evol. Microbiol. 49 1053 1073 (Pubitemid 29320756)
3. W.R. Abraham C. Strömpl M. Vancanneyt A. Bennasar J. Swings H. Lunsdorf J. Smit E.R.B. Moore 2004 Woodsholea maritima gen. nov., sp. nov., a marine bacterium with a low diversity of polar lipids Int. J. Syst. Evol. Microbiol. 54 1227 1234 (Pubitemid 39139844)
4. R. Desper O. Gascuel 2002 Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle J. Comp. Biol. 9 687 705 (Pubitemid 36042994)
5. J. Felsenstein 1985 Phylogenies and the comparative method Am. Nat. 125 1 15 (Pubitemid 16276188)
6. Gerhardt, P., R.G.E. Murray, W.A. Wood, and N.R. Krieg. 1994. Methods for General and Molecular Bacteriology. American Society for Microbiology, Washington, D.C., USA.
7. J.M. Gonzalez C. Saiz-Jimenez 2002 A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature Environ. Microbiol. 4 770 773 (Pubitemid 35442266)
8. Jukes, T.H. and C.R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H.N. Munro (ed.), Mammalian Protein Metabolism, vol. 3. Academic Press, New York, USA.
9. K. Komagata K. Suzuki 1987 Lipid and cell-wall analysis in bacterial systematics Methods Microbiol. 19 161 207
10. S. Kumar K. Tamura M. Nei 2004 MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform. 5 150 163
11. K. Lee H.K. Lee T.H. Choi J.C. Cho 2007 Robiginitomaculum antarcticum gen. nov., sp. nov., a member of the family Hyphomonadaceae, from Antarctic seawater Int. J. Syst. Evol. Microbiol. 57 2595 2599 (Pubitemid 350187424)
12. K.B. Lee C.T. Liu Y. Anzai H. Kim T. Aonol H. Oyaizu 2005 The hierarchical system of the 'Alphaproteobacteria': description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov Int. J. Syst. Evol. Microbiol. 55 1907 1919 (Pubitemid 41435033)
13. R.L. Moore R.M. Weiner R. Gebers 1984 Genus Hyphomonas Pongratz 1957 nom. rev. emend., Hyphomonas polumorpha Pongratz 1957 nom. rev. emend., and Hyphomonas neptunium (Leifson 1964) comb. nov. emend. (Hyphomicrobium neptunium) Int. J. Syst. Evol. Microbiol. 34 71 73 (Pubitemid 14164237)
14. Z.X. Quan H.S. Bae J.H. Baek W.F. Chen W.T. Im S.T. Lee 2005 Rhizobium daejeonense sp. nov. isolated from a cyanide treatment bioreactor Int. J. Syst. Evol. Microbiol. 55 2543 2549 (Pubitemid 41646441)
15. D.J. Reasoner E.E. Geldreich 1985 A new medium for the enumeration and subculture of bacteria from potable water Appl. Environ. Microbiol. 49 1 7 (Pubitemid 15184388)
16. N. Saitou M. Nei 1987 The neighbor-joining method - a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 406 425
17. Sasser, M. 1990. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. MIDI, Newark, DE, USA.
18. H. Schlesner C. Bartels M. Sittig M. Dorsch E. Stackebrandt 1990 Taxonomic and phylogenetic studies on a new taxon of budding, hyphal proteobacteria, Hirschia baltica gen. nov., sp. nov Int. J. Syst. Evol. Microbiol. 40 443 451 (Pubitemid 20378409)
19. C. Strömpl G.L. Hold H. Lusdorf J. Graham S. Gallacher W.R. Abraham E.R.B. Moore K.N. Timmis 2003 Oceanicaulis alexandrii gen. nov., sp. nov., a novel stalked bacterium isolated from a culture of the dinoflagellate Alexandrium tamarense (Lebour) Balech Int. J. Syst. Evol. Microbiol. 53 1901 1906 (Pubitemid 37483849)
20. Swofford, D.L. 1993. PAUP. Phylogenetic Analysis Using Parsimony, version 3.1.1. Illinois Natural History Survey, Champaign, IL, USA.
21. J.D. Thompson T.J. Gibson F. Plewniak F. Jeanmougin D.G. Higgins 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 4876 4882
22. R.M. Weiner M. Melick K. O'Neill E. Quintero 2000 Hyphomonas adhaerens sp. nov., Hyphomonas johnsonii sp. nov. and Hyphomonas rosenbergii sp. nov., marine budding and prosthecate bacteria Int. J. Syst. Evol. Microbiol. 50 459 469 (Pubitemid 30167486)
23. K.P. Williams B.W. Sobral A.W. Dickerman 2007 A robust species tree for the 'Alphaproteobacteria' J. Bacteriol. 189 4578 4586 (Pubitemid 47025569)
24. H.X. Xu Y. Kawamura N. Li L.C. Zhao T.M. Li Z.Y. Li S.N. Shu T. Ezaki 2000 A rapid method for determining the G+C content of bacterial chromosomes by monitoring fluorescence intensity during DNA denaturation in a capillary tube Int. J. Syst. Evol. Microbiol. 50 1463 1469 (Pubitemid 30601956)