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Volumn 2, Issue 1, 2009, Pages 23-37

Increasing accuracy and throughput in large-scale microsatellite fingerprinting of cacao field germplasm collections

Author keywords

Discriminatory loci; Germplasm; Identity resolution; SSR fingerprinting; Theobroma cacao L.

Indexed keywords

THEOBROMA CACAO;

EID: 65249160575     PISSN: 19359756     EISSN: 19359764     Source Type: Journal    
DOI: 10.1007/s12042-008-9016-z     Document Type: Article
Times cited : (19)

References (78)
  • 1
    • 22844447206 scopus 로고    scopus 로고
    • Genetic variation in sorghum germplasm from Sudan, ICRISAT, and USA assessed by simple sequence repeats (SSRs)
    • DOI:10.2135/cropsci2003.0383
    • AH Abu Assar R Uptmoor AA Abdelmula M Salih F Ordon W Friedt 2005 Genetic variation in sorghum germplasm from Sudan, ICRISAT, and USA assessed by simple sequence repeats (SSRs) Crop Sci 45 1636 1644 DOI:10.2135/cropsci2003.0383
    • (2005) Crop Sci , vol.45 , pp. 1636-1644
    • Abu Assar, A.H.1    Uptmoor, R.2    Abdelmula, A.A.3    Salih, M.4    Ordon, F.5    Friedt, W.6
  • 2
    • 0038047489 scopus 로고    scopus 로고
    • Microsatellite variability in peach [Prunus persica (L.) Batsch]: Cultivar identification, marker mutation, pedigree inferences and population structure
    • MJ Aranzana J Carbó P Arús 2003 Microsatellite variability in peach [Prunus persica (L.) Batsch]: cultivar identification, marker mutation, pedigree inferences and population structure Theor Appl Genet 106 1341 1352
    • (2003) Theor Appl Genet , vol.106 , pp. 1341-1352
    • Aranzana, M.J.1    Carbó, J.2    Arús, P.3
  • 3
    • 0038379825 scopus 로고    scopus 로고
    • Genetic diversity of introduced and local Spanish persimmon cultivars revealed by RAPD markers
    • DOI:10.1023/A:1024474719036
    • M Badenes A Garcés C Romero M Romero J Clavé M Rovira G Llácer 2003 Genetic diversity of introduced and local Spanish persimmon cultivars revealed by RAPD markers Genet Resour Crop Evol 50 579 585 DOI:10.1023/A:1024474719036
    • (2003) Genet Resour Crop Evol , vol.50 , pp. 579-585
    • Badenes, M.1    Garcés, A.2    Romero, C.3    Romero, M.4    Clavé, J.5    Rovira, M.6    Llácer, G.7
  • 4
    • 0000913325 scopus 로고    scopus 로고
    • Efficient SNP-based tests of association for quantitative phenotypes using pooled DNA
    • DOI:10.1046/j.1466-920x.2001.00036.x
    • J Bader A Bansal P Sham 2001 Efficient SNP-based tests of association for quantitative phenotypes using pooled DNA GeneScreen 1 143 150 DOI:10.1046/j.1466-920x.2001.00036.x
    • (2001) GeneScreen , vol.1 , pp. 143-150
    • Bader, J.1    Bansal, A.2    Sham, P.3
  • 6
    • 0036866635 scopus 로고    scopus 로고
    • Identification of the sources of error in allele frequency estimations from pooled DNA indicates an optimal experimental design
    • DOI:10.1046/j.1469-1809.2002.00125.x
    • BJ Barratt F Payne HE Rance S Nutland JA Todd DG Clayton 2002 Identification of the sources of error in allele frequency estimations from pooled DNA indicates an optimal experimental design Ann Hum Genet 66 393 405 DOI:10.1046/j.1469-1809.2002.00125.x
    • (2002) Ann Hum Genet , vol.66 , pp. 393-405
    • Barratt, B.J.1    Payne, F.2    Rance, H.E.3    Nutland, S.4    Todd, J.A.5    Clayton, D.G.6
  • 8
    • 0019302053 scopus 로고
    • Construction of a genetic linkage map in man using restriction fragment length polymorphisms
    • D Botstein RL White M Skolnick RW Davis 1980 Construction of a genetic linkage map in man using restriction fragment length polymorphisms Am J Hum Genet 32 314 331
    • (1980) Am J Hum Genet , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.L.2    Skolnick, M.3    Davis, R.W.4
  • 9
    • 0036897761 scopus 로고    scopus 로고
    • False alleles derived from microbial DNA pose a potential source of error in microsatellite genotyping of DNA from faeces
    • DOI:10.1046/j.1471-8286.2002.00302.x
    • BJ Bradley L Vigilant 2002 False alleles derived from microbial DNA pose a potential source of error in microsatellite genotyping of DNA from faeces Mol Ecol Notes 2 602 605 DOI:10.1046/j.1471-8286.2002.00302.x
    • (2002) Mol Ecol Notes , vol.2 , pp. 602-605
    • Bradley, B.J.1    Vigilant, L.2
  • 11
    • 0033960076 scopus 로고    scopus 로고
    • The use of self-pollinated progenies as "in-groups" for the genetic characterization of cocoa germplasm
    • DOI:10.1007/PL00002903
    • MY Charters MJ Wilkinson 2000 The use of self-pollinated progenies as "in-groups" for the genetic characterization of cocoa germplasm Theor Appl Genet 100 160 166 DOI:10.1007/PL00002903
    • (2000) Theor Appl Genet , vol.100 , pp. 160-166
    • Charters, M.Y.1    Wilkinson, M.J.2
  • 14
    • 33644851176 scopus 로고    scopus 로고
    • High throughput, high resolution selection of polymorphic microsatellite loci for multiplex analysis
    • 10.1186/1746-4811-1-3.Availablevia
    • Cryer NC, Butler DR, Wilkinson MJ (2005) High throughput, high resolution selection of polymorphic microsatellite loci for multiplex analysis. Plant Methods 1:3 doi: 10.1186/1746-4811-1-3. Available via http://www.plantmethods. com/content/1/1/3. Cited 07 Jul 2008
    • (2005) Plant Methods , vol.1 , Issue.3
    • Cryer, N.C.1    Butler, D.R.2    Wilkinson, M.J.3
  • 15
    • 33748041719 scopus 로고    scopus 로고
    • Allelic size standards and reference genotypes to unify international cocoa (Theobroma cacao L.) microsatellite data
    • DOI:10.1007/s10722-005-1286-9
    • NC Cryer MGE Fenn CJ Turnbull MJ Wilkinson 2006 Allelic size standards and reference genotypes to unify international cocoa (Theobroma cacao L.) microsatellite data Genet Resour Crop Evol 53 8 1643 1652 DOI:10.1007/s10722- 005-1286-9
    • (2006) Genet Resour Crop Evol , vol.53 , Issue.8 , pp. 1643-1652
    • Cryer, N.C.1    Fenn, M.G.E.2    Turnbull, C.J.3    Wilkinson, M.J.4
  • 17
    • 0031981997 scopus 로고    scopus 로고
    • A simple method for analysing microsatellite allele image patterns generated from DNA pools and its applications to allelic association studies
    • DOI:10.1086/301816
    • J Daniels P Holmans N Williams D Turic P McGuffin R Plomin MJ Owen 1998 A simple method for analysing microsatellite allele image patterns generated from DNA pools and its applications to allelic association studies Am J Hum Genet 62 1189 1197 DOI:10.1086/301816
    • (1998) Am J Hum Genet , vol.62 , pp. 1189-1197
    • Daniels, J.1    Holmans, P.2    Williams, N.3    Turic, D.4    McGuffin, P.5    Plomin, R.6    Owen, M.J.7
  • 18
    • 0033432239 scopus 로고    scopus 로고
    • Evaluation of a DNA-pooled sampling strategy for estimating the RFLP diversity of maize populations
    • DOI:10.1023/A:1007571101815
    • P Dubreuil C Rebourg M Merlino A Charcosset 1999 Evaluation of a DNA-pooled sampling strategy for estimating the RFLP diversity of maize populations Plant Mol Biol Rep 17 123 138 DOI:10.1023/A:1007571101815
    • (1999) Plant Mol Biol Rep , vol.17 , pp. 123-138
    • Dubreuil, P.1    Rebourg, C.2    Merlino, M.3    Charcosset, A.4
  • 20
    • 0242342854 scopus 로고    scopus 로고
    • Homonymous genotypes and misidentification in germplasm collections of Brazil and Malaysia
    • Figueira A (1998) Homonymous genotypes and misidentification in germplasm collections of Brazil and Malaysia. INGENIC Newsletter 4:4-8. Available via http://ingenic.cas.psu.edu/newsletters.htm. Cited 07 Jul 2008
    • (1998) INGENIC Newsletter , vol.4 , pp. 4-8
    • Figueira, A.1
  • 21
    • 24644431898 scopus 로고    scopus 로고
    • Genetic relationships and clonal identity in a collection of commercially relevant poplar cultivars assessed by AFLP and SSR
    • DOI:10.1007/s11295-004-0002-9
    • T Fossati I Zapelli S Bisoffi A Micheletti L Vietto F Sala S Castiglione 2005 Genetic relationships and clonal identity in a collection of commercially relevant poplar cultivars assessed by AFLP and SSR Tree Genet Genomes 1 11 19 DOI:10.1007/s11295-004-0002-9
    • (2005) Tree Genet Genomes , vol.1 , pp. 11-19
    • Fossati, T.1    Zapelli, I.2    Bisoffi, S.3    Micheletti, A.4    Vietto, L.5    Sala, F.6    Castiglione, S.7
  • 22
    • 0031239254 scopus 로고    scopus 로고
    • Microsatellite scoring errors associated with noninvasive genotyping based on nuclear DNA amplified from shed hair
    • DOI:10.1111/j.1365-294X.1997.tb00140.x
    • P Gagneux C Boesch DS Woodruff 1997 Microsatellite scoring errors associated with noninvasive genotyping based on nuclear DNA amplified from shed hair Mol Ecol 6 861 868 DOI:10.1111/j.1365-294X.1997.tb00140.x
    • (1997) Mol Ecol , vol.6 , pp. 861-868
    • Gagneux, P.1    Boesch, C.2    Woodruff, D.S.3
  • 23
    • 0035738114 scopus 로고    scopus 로고
    • A fast method for checking the genetic identity of ramets in a clonal seed orchard by RAPD analysis with a bulking procedure
    • S Goto F Miyahara Y Ide 2001 A fast method for checking the genetic identity of ramets in a clonal seed orchard by RAPD analysis with a bulking procedure Silvae Genet 50 5-6 271 275
    • (2001) Silvae Genet , vol.50 , Issue.56 , pp. 271-275
    • Goto, S.1    Miyahara, F.2    Ide, Y.3
  • 24
    • 34748886657 scopus 로고    scopus 로고
    • PAST: Paleontological statistics software package for education and data analysis
    • http://folk.uio.no/ohammer/past.Cited07Jul2008
    • Hammer O, Harper DAT, Ryan PD (2001) PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontologia Electronica 4(1) http://palaeo-electronica.org/2001-1/past/issue1-01.htm. (PAST.exe v1.79 available at http://folk.uio.no/ohammer/past. Cited 07 Jul 2008
    • (2001) Palaeontologia Electronica , vol.4 , Issue.1
    • Hammer, O.1    Harper, D.A.T.2    Ryan, P.D.3
  • 25
    • 13444282592 scopus 로고    scopus 로고
    • Microsatellite genotyping errors: Detection approaches, common sources and consequences for parental exclusion
    • JI Hoffman W Amos 2005 Microsatellite genotyping errors: Detection approaches, common sources and consequences for parental exclusion Mol Ecol 14 599 612
    • (2005) Mol Ecol , vol.14 , pp. 599-612
    • Hoffman, J.I.1    Amos, W.2
  • 27
    • 65249142394 scopus 로고    scopus 로고
    • International Rice Research International (1998 - 2005) IRRISTAT v5.0 for Windows. Metro Manila, Philippines. Software available from download via
    • International Rice Research International (1998 - 2005) IRRISTAT v5.0 for Windows. Metro Manila, Philippines. Software available from download via http://www.irri.org/science/software/irristat.asp. Cited 07 Jul 2008
  • 28
    • 85047697619 scopus 로고    scopus 로고
    • Optimal selection strategies for QTL mapping using pooled DNA samples
    • DOI:10.1038/sj.ejhg.5200771
    • A Jawaid J Bader S Purcell S Cherny P Sham 2002 Optimal selection strategies for QTL mapping using pooled DNA samples Eur J Hum Genet 10 125 132 DOI:10.1038/sj.ejhg.5200771
    • (2002) Eur J Hum Genet , vol.10 , pp. 125-132
    • Jawaid, A.1    Bader, J.2    Purcell, S.3    Cherny, S.4    Sham, P.5
  • 29
    • 34447529277 scopus 로고    scopus 로고
    • Field guide efficacy in the identification of reallocated clonally propagated accessions of cacao (Theobroma cacao L.)
    • DOI:10.1007/s10722-006-9111-7
    • ES Johnson A Mora RJ Schnell 2007 Field guide efficacy in the identification of reallocated clonally propagated accessions of cacao (Theobroma cacao L.) Genet Resour Crop Evol 54 1301 1313 DOI:10.1007/s10722-006-9111-7
    • (2007) Genet Resour Crop Evol , vol.54 , pp. 1301-1313
    • Johnson, E.S.1    Mora, A.2    Schnell, R.J.3
  • 30
    • 33749001181 scopus 로고    scopus 로고
    • Individual identification and distributions of genotypic differences between individuals
    • DOI:10.2193/0022-541X(2006)70[1148:IIADOG]2.0.CO;2
    • ST Kalinowski MA Sawaya ML Taper 2006 Individual identification and distributions of genotypic differences between individuals J Wildl Manage 70 4 1148 1150 DOI:10.2193/0022-541X(2006)70[1148:IIADOG]2.0.CO;2
    • (2006) J Wildl Manage , vol.70 , Issue.4 , pp. 1148-1150
    • Kalinowski, S.T.1    Sawaya, M.A.2    Taper, M.L.3
  • 33
    • 13144251225 scopus 로고    scopus 로고
    • Molecular characterization of Moroccan fig germplasm using intersimple sequence repeat and simple sequence repeat markers to establish a reference collection
    • B Khadari A Oukabli M Ater A Mamouni JP Roger F Kjellberg 2005 Molecular characterization of Moroccan fig germplasm using intersimple sequence repeat and simple sequence repeat markers to establish a reference collection HortScience 40 1 29 32
    • (2005) HortScience , vol.40 , Issue.1 , pp. 29-32
    • Khadari, B.1    Oukabli, A.2    Ater, M.3    Mamouni, A.4    Roger, J.P.5    Kjellberg, F.6
  • 35
    • 0035207419 scopus 로고    scopus 로고
    • Bulked AFLP analysis for the assessment of genetic diversity in white clover (Trifolium repens L.)
    • DOI:10.1023/A:1012048103585
    • R Kölliker ES Jones MZZ Jahufer JW Forster 2001 Bulked AFLP analysis for the assessment of genetic diversity in white clover (Trifolium repens L.) Euphytica 121 305 315 DOI:10.1023/A:1012048103585
    • (2001) Euphytica , vol.121 , pp. 305-315
    • Kölliker, R.1    Jones, E.S.2    Jahufer, M.Z.Z.3    Forster, J.W.4
  • 36
    • 34547597041 scopus 로고    scopus 로고
    • Molecular characterization of the U.S. peanut mini core collection using microsatellite markers
    • DOI:10.2135/cropsci2006.06.0407
    • KR Kottapalli MD Burow G Burow J Burke N Puppala 2007 Molecular characterization of the U.S. peanut mini core collection using microsatellite markers Crop Sci 47 1718 1727 DOI:10.2135/cropsci2006.06.0407
    • (2007) Crop Sci , vol.47 , pp. 1718-1727
    • Kottapalli, K.R.1    Burow, M.D.2    Burow, G.3    Burke, J.4    Puppala, N.5
  • 37
    • 0033367181 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellites in Theobroma cacao L
    • DOI:10.1046/j.1365-294x.1999.00802.x
    • C Lanaud AM Risterucci I Piretti M Falque A Bouet PJL Lagoda 1999 Isolation and characterization of microsatellites in Theobroma cacao L Mol Ecol 8 2141 2152 DOI:10.1046/j.1365-294x.1999.00802.x
    • (1999) Mol Ecol , vol.8 , pp. 2141-2152
    • Lanaud, C.1    Risterucci, A.M.2    Piretti, I.3    Falque, M.4    Bouet, A.5    Lagoda, P.J.L.6
  • 38
    • 0035130116 scopus 로고    scopus 로고
    • Derermining genetic similarities and relationships among cowpea breeding lines and cultivars by microsatellite markers
    • C-D Li CA Fatokun B Ubi BB Singh GJ Scoles 2001 Derermining genetic similarities and relationships among cowpea breeding lines and cultivars by microsatellite markers Crop Sci 41 189 197
    • (2001) Crop Sci , vol.41 , pp. 189-197
    • Li, C.-D.1    Fatokun, C.A.2    Ubi, B.3    Singh, B.B.4    Scoles, G.J.5
  • 39
    • 18744382780 scopus 로고    scopus 로고
    • PowerMarker: An integrated analysis environment for genetic marker analysis
    • DOI:10.1093/bioinformatics/bti282
    • K Liu SV Muse 2005 PowerMarker: An integrated analysis environment for genetic marker analysis Bioinformatics 21 2128 2129 DOI:10.1093/bioinformatics/ bti282
    • (2005) Bioinformatics , vol.21 , pp. 2128-2129
    • Liu, K.1    Muse, S.V.2
  • 40
    • 0034960278 scopus 로고    scopus 로고
    • Quantitative evaluation of genetic diversity in wheat germplasm using molecular markers
    • MM Manifesto AR Schlatter HE Hopp EY Suárez J Dubcovsky 2001 Quantitative evaluation of genetic diversity in wheat germplasm using molecular markers Crop Sci 41 682 690
    • (2001) Crop Sci , vol.41 , pp. 682-690
    • Manifesto, M.M.1    Schlatter, A.R.2    Hopp, H.E.3    Suárez, E.Y.4    Dubcovsky, J.5
  • 41
    • 0032077236 scopus 로고    scopus 로고
    • Statistical confidence for likelihood-based paternity inference in natural populations
    • DOI:10.1046/j.1365-294x.1998.00374.x
    • TC Marshall J Slate LEB Kruuk JM Pemberton 1998 Statistical confidence for likelihood-based paternity inference in natural populations Mol Ecol 7 639 655 DOI:10.1046/j.1365-294x.1998.00374.x
    • (1998) Mol Ecol , vol.7 , pp. 639-655
    • Marshall, T.C.1    Slate, J.2    Kruuk, L.E.B.3    Pemberton, J.M.4
  • 44
    • 3843053690 scopus 로고    scopus 로고
    • Genetic errors associated with population estimation using non-invasive molecular tagging: Problems and new solutions
    • DOI:10.2193/0022-541X(2004)068[0439:GEAWPE]2.0.CO;2
    • KS McKelvey MK Schwartz 2004 Genetic errors associated with population estimation using non-invasive molecular tagging: Problems and new solutions J Wildl Manage 68 439 448 DOI:10.2193/0022-541X(2004)068[0439:GEAWPE]2.0.CO;2
    • (2004) J Wildl Manage , vol.68 , pp. 439-448
    • McKelvey, K.S.1    Schwartz, M.K.2
  • 45
    • 0026052189 scopus 로고
    • Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations
    • DOI:10.1073/pnas.88.21.9828
    • RW Michelmore I Paran RV Kesseli 1991 Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations Proc Natl Acad Sci USA 88 9828 9832 DOI:10.1073/pnas.88.21.9828
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 9828-9832
    • Michelmore, R.W.1    Paran, I.2    Kesseli, R.V.3
  • 48
    • 0027357965 scopus 로고
    • PCR-amplified microsatellites as markers in plant genetics
    • DOI:10.1111/j.1365-313X.1993.tb00020.x
    • M Morgante AM Olivieri 1993 PCR-amplified microsatellites as markers in plant genetics Plant J 3 175 182 DOI:10.1111/j.1365-313X.1993.tb00020.x
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 50
    • 65249147345 scopus 로고    scopus 로고
    • Annual Report 2003, Cocoa Research Unit, The University of the West Indies, St. Augustine, Trinidad and Tobago
    • Motilal LA (2004) Tree identification by simple sequence repeats: a synopsis for 2000-2003. In: Annual Report 2003, Cocoa Research Unit, The University of the West Indies, St. Augustine, Trinidad and Tobago, pp. 13-21
    • (2004) Tree Identification by Simple Sequence Repeats: A Synopsis for 2000-2003 , pp. 13-21
    • Motilal, L.A.1
  • 51
    • 0242339642 scopus 로고    scopus 로고
    • Verification of identities in global cacao germplasm collections
    • DOI:10.1023/A:1025950902827
    • L Motilal D Butler 2003 Verification of identities in global cacao germplasm collections Genet Resour Crop Evol 50 799 807 DOI:10.1023/A: 1025950902827
    • (2003) Genet Resour Crop Evol , vol.50 , pp. 799-807
    • Motilal, L.1    Butler, D.2
  • 53
    • 0027485238 scopus 로고
    • Determination of allele frequencies at loci with length polymorphism by quantitative analysis of DNA amplified from pooled samples
    • P Pacek A Sajantila AC Syvanen 1993 Determination of allele frequencies at loci with length polymorphism by quantitative analysis of DNA amplified from pooled samples PCR Methods Appl 2 313 317
    • (1993) PCR Methods Appl , vol.2 , pp. 313-317
    • Pacek, P.1    Sajantila, A.2    Syvanen, A.C.3
  • 54
    • 65249112888 scopus 로고    scopus 로고
    • TreeView v1.6.6
    • Page RDM (2001) TreeView v1.6.6. Available via http://taxonomy.zoology. gla.ac.uk/rod/rod.html. Cited 07 Jul 2008
    • (2001)
    • Page, R.D.M.1
  • 55
    • 7844227430 scopus 로고    scopus 로고
    • The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis
    • DOI:10.1007/BF00564200
    • W Powell M Morgante C Andre M Hanafey J Vogel S Tingey A Rafalski 1996 The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis Mol Breed 2 225 238 DOI:10.1007/BF00564200
    • (1996) Mol Breed , vol.2 , pp. 225-238
    • Powell, W.1    Morgante, M.2    Andre, C.3    Hanafey, M.4    Vogel, J.5    Tingey, S.6    Rafalski, A.7
  • 57
    • 33847773628 scopus 로고    scopus 로고
    • Genetic diversity of different Tunisian fig (Ficus carica L.) collections revealed by RAPD fingerprints
    • DOI:10.1111/j.2005.0018-0661.01904.x
    • A Salhi-Hannachi K Chatti O Saddoud M Mars A Rhouma M Marrakchi M Trifi 2006 Genetic diversity of different Tunisian fig (Ficus carica L.) collections revealed by RAPD fingerprints Hereditas 143 15 22 DOI:10.1111/j.2005.0018-0661. 01904.x
    • (2006) Hereditas , vol.143 , pp. 15-22
    • Salhi-Hannachi, A.1    Chatti, K.2    Saddoud, O.3    Mars, M.4    Rhouma, A.5    Marrakchi, M.6    Trifi, M.7
  • 58
    • 13844282419 scopus 로고    scopus 로고
    • Selection of international molecular standard for DNA fingerprinting
    • DOI:10.1007/s00122-004-1762-1
    • JA Saunders AA Hemeida S Mischke 2004 Selection of international molecular standard for DNA fingerprinting Theor Appl Genet 110 41 47 DOI:10.1007/s00122-004-1762-1
    • (2004) Theor Appl Genet , vol.110 , pp. 41-47
    • Saunders, J.A.1    Hemeida, A.A.2    Mischke, S.3
  • 59
    • 0031906332 scopus 로고    scopus 로고
    • The distribution and frequency of microsatellite loci in Drosophila melanogaster
    • DOI:10.1046/j.1365-294x.1998.00304.x
    • MD Schug KA Wetterstrand MS Gaudette RH Lim CM Hutter CF Aquadro 1998 The distribution and frequency of microsatellite loci in Drosophila melanogaster Mol Ecol 7 57 70 DOI:10.1046/j.1365-294x.1998.00304.x
    • (1998) Mol Ecol , vol.7 , pp. 57-70
    • Schug, M.D.1    Wetterstrand, K.A.2    Gaudette, M.S.3    Lim, R.H.4    Hutter, C.M.5    Aquadro, C.F.6
  • 60
    • 33644558685 scopus 로고    scopus 로고
    • Genetic diversity and natural population structure of cacao (Theobroma cacao L.) from the Brazilian Amazon evaluated by microsatellite markers
    • DOI:10.1007/s10592-005-7568-0
    • ML Sereno PSB Albuquerque R Vencovsky A Figueira 2006 Genetic diversity and natural population structure of cacao (Theobroma cacao L.) from the Brazilian Amazon evaluated by microsatellite markers Conserv Genet 7 13 24 DOI:10.1007/s10592-005-7568-0
    • (2006) Conserv Genet , vol.7 , pp. 13-24
    • Sereno, M.L.1    Albuquerque, P.S.B.2    Vencovsky, R.3    Figueira, A.4
  • 61
    • 0036844881 scopus 로고    scopus 로고
    • DNA pooling: A tool for large-scale association studies
    • DOI:10.1038/nrg930
    • P Sham JS Bader I Craig M O'Donovan M Owen 2002 DNA pooling: A tool for large-scale association studies Nat Rev Genet 3 862 871 DOI:10.1038/nrg930
    • (2002) Nat Rev Genet , vol.3 , pp. 862-871
    • Sham, P.1    Bader, J.S.2    Craig, I.3    O'Donovan, M.4    Owen, M.5
  • 62
    • 13244298507 scopus 로고    scopus 로고
    • Geographical patterns of genetic variation in the world collections of wild annual Cicer characterized by amplified fragment length polymorphisms
    • DOI:10.1007/s00122-004-1849-8
    • F Shan HC Clarke JA Plummer G Yan KHM Siddique 2005 Geographical patterns of genetic variation in the world collections of wild annual Cicer characterized by amplified fragment length polymorphisms Theor Appl Genet 110 381 391 DOI:10.1007/s00122-004-1849-8
    • (2005) Theor Appl Genet , vol.110 , pp. 381-391
    • Shan, F.1    Clarke, H.C.2    Plummer, J.A.3    Yan, G.4    Siddique, K.H.M.5
  • 63
    • 0031889566 scopus 로고    scopus 로고
    • Allele frequency distributions in pooled DNA samples: Applications to mapping complex disease genes
    • SH Shaw MM Carrasquillo C Kashuk EG Puffenberger A Chakravarti 1998 Allele frequency distributions in pooled DNA samples: applications to mapping complex disease genes Genome Res 8 111 123
    • (1998) Genome Res , vol.8 , pp. 111-123
    • Shaw, S.H.1    Carrasquillo, M.M.2    Kashuk, C.3    Puffenberger, E.G.4    Chakravarti, A.5
  • 65
    • 65249094434 scopus 로고    scopus 로고
    • Identification of off-types of clones used in the international clone trial using DNA analyses
    • Eskes AB, Efron Y (eds) Final report of the CFC/ICCO/IPGRI project on "Cocoa Germplasm Utilization and Conservation: a Global Approach" (1998-2004). CFC, Amsterdam, The Netherlands/ICCO, London, UK/IPGRI, Rome, Italy
    • Sounigo O, Risterucci A-M, Clément D, Fouet O, Lanaud C (2006) Identification of off-types of clones used in the International Clone Trial using DNA analyses. In: Eskes AB, Efron Y (eds) Global Approaches to Cocoa Germplasm Utilization and Conservation. Final report of the CFC/ICCO/IPGRI project on "Cocoa Germplasm Utilization and Conservation: a Global Approach" (1998-2004). CFC, Amsterdam, The Netherlands/ICCO, London, UK/IPGRI, Rome, Italy, pp82-86, Available via http://www. bioversityinternational.org/publications/pubfile.asp?ID-PUB=1172. Cited 07 Jul 2008
    • (2006) Global Approaches to Cocoa Germplasm Utilization and Conservation , pp. 82-86
    • Sounigo, O.1
  • 66
    • 65249107806 scopus 로고    scopus 로고
    • USDA cacao DNA fingerprinting ring test: Results from Penn State University. INGENIC Newsletter 8:22-24
    • Swanson JD, Lee AC, Guiltinan MJ (2003) USDA cacao DNA fingerprinting ring test: Results from Penn State University. INGENIC Newsletter 8:22-24. Available via http://ingenic.cas.psu.edu/newsletters.htm. Cited 07 Jul 2008
    • (2003)
    • Swanson, J.D.1    Lee, A.C.2    Guiltinan, M.J.3
  • 67
    • 65249123663 scopus 로고    scopus 로고
    • PAUP: Phylogenetic analysis using parsimony and other methods (Sinauer Associates, Sunderland, MA), Version 4.0b
    • Swofford DL (1999) PAUP: Phylogenetic analysis using parsimony and other methods (Sinauer Associates, Sunderland, MA), Version 4.0b
    • (1999)
    • Swofford, D.L.1
  • 69
    • 0032843676 scopus 로고    scopus 로고
    • Non-invasive genetic sampling and individual identification
    • DOI:10.1111/j.1095-8312.1999.tb01157.x
    • P Taberlet G Luikart 1999 Non-invasive genetic sampling and individual identification Biol J Linn Soc Lond 68 41 55 DOI:10.1111/j.1095-8312.1999. tb01157.x
    • (1999) Biol J Linn Soc Lond , vol.68 , pp. 41-55
    • Taberlet, P.1    Luikart, G.2
  • 70
    • 33646547875 scopus 로고    scopus 로고
    • Use of genetic markers in the management of micropropagated Eucalyptus germplasm
    • DOI:10.1007/s11056-005-8677-9
    • SB Tripathi NV Mathish K Gurumurthi 2006 Use of genetic markers in the management of micropropagated Eucalyptus germplasm New For 31 361 372 DOI:10.1007/s11056-005-8677-9
    • (2006) New for , vol.31 , pp. 361-372
    • Tripathi, S.B.1    Mathish, N.V.2    Gurumurthi, K.3
  • 71
    • 0036734955 scopus 로고    scopus 로고
    • GIMLET: A computer program for analysing genetic individual identification data
    • DOI:10.1046/j.1471-8286.2002.00228.x
    • N Valière 2002 GIMLET: a computer program for analysing genetic individual identification data Mol Ecol Notes 2 377 379 DOI:10.1046/j.1471-8286. 2002.00228.x
    • (2002) Mol Ecol Notes , vol.2 , pp. 377-379
    • Valière, N.1
  • 72
    • 0033780435 scopus 로고    scopus 로고
    • Duplication within and between germplasm collections. III. A quantitative model
    • DOI:10.1023/A:1008703031415
    • JL Van Hintum Theo 2000 Duplication within and between germplasm collections. III. A quantitative model Genet Resour Crop Evol 47 507 513 DOI:10.1023/A:1008703031415
    • (2000) Genet Resour Crop Evol , vol.47 , pp. 507-513
    • Van Hintum Theo, J.L.1
  • 74
    • 0035144122 scopus 로고    scopus 로고
    • Estimating the probability of identity among genotypes in natural populations: Cautions and guidelines
    • DOI:10.1046/j.1365-294X.2001.01185.x
    • LP Waits G Luikart P Taberlet 2001 Estimating the probability of identity among genotypes in natural populations: cautions and guidelines Mol Ecol 10 1 249 256 DOI:10.1046/j.1365-294X.2001.01185.x
    • (2001) Mol Ecol , vol.10 , Issue.1 , pp. 249-256
    • Waits, L.P.1    Luikart, G.2    Taberlet, P.3
  • 76
    • 0038472056 scopus 로고    scopus 로고
    • Efficiency of single-nucleotide polymorphism haplotype estimation from pooled DNA
    • DOI:10.1073/pnas.1237858100
    • Y Yang J Zhang J Hoh F Matsuda P Xu M Lathrop J Ott 2003 Efficiency of single-nucleotide polymorphism haplotype estimation from pooled DNA Proc Natl Acad Sci USA 100 12 7225 7230 DOI:10.1073/pnas.1237858100
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.12 , pp. 7225-7230
    • Yang, Y.1    Zhang, J.2    Hoh, J.3    Matsuda, F.4    Xu, P.5    Lathrop, M.6    Ott, J.7
  • 77
    • 33748029866 scopus 로고    scopus 로고
    • Accuracy and reliability of high-throughput microsatellite genotyping for cacao clone identification
    • DOI:10.2135/cropsci2006.01.0004
    • D Zhang S Mischke R Goenaga AA Hemeida JA Saunders 2006 Accuracy and reliability of high-throughput microsatellite genotyping for cacao clone identification Crop Sci 46 2084 2092 DOI:10.2135/cropsci2006.01.0004
    • (2006) Crop Sci , vol.46 , pp. 2084-2092
    • Zhang, D.1    Mischke, S.2    Goenaga, R.3    Hemeida, A.A.4    Saunders, J.A.5
  • 78
    • 0346732120 scopus 로고    scopus 로고
    • The impacts of error in individual genotyping and DNA pooling on association studies
    • DOI:10.1002/gepi.10277
    • G Zou H Zhao 2004 The impacts of error in individual genotyping and DNA pooling on association studies Genet Epidemiol 26 1 10 DOI:10.1002/gepi.10277
    • (2004) Genet Epidemiol , vol.26 , pp. 1-10
    • Zou, G.1    Zhao, H.2


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