-
1
-
-
0030801002
-
Gapped BLAST and PSI- BLAST: A new generation of protein database search programs
-
PMID:9254694, doi:10.1093/nar/25.17.3389
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI- BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. doi:10.1093/nar/25.17.3389. PMID:9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0033754096
-
Phylogenetic characterization and in situ detection of a Cytophaga-Flexibacter-Bacteroides phylogroup bacterium in Tuber borchii Vittad, ectomycorrhizal mycelium
-
PMID:11055961, doi:10.1128/AEM.66.11. 5035-5042.2000
-
Barbieri, E., Potenza, L., Rossi, I., Sisti, D., Giomaro, G., Rosetti, S., et al. 2000. Phylogenetic characterization and in situ detection of a Cytophaga-Flexibacter-Bacteroides phylogroup bacterium in Tuber borchii Vittad, ectomycorrhizal mycelium. Appl. Environ. Microbiol. 66: 5035-5042. doi:10.1128/AEM.66.11. 5035-5042.2000. PMID:11055961.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 5035-5042
-
-
Barbieri, E.1
Potenza, L.2
Rossi, I.3
Sisti, D.4
Giomaro, G.5
Rosetti, S.6
-
3
-
-
36549051503
-
The genus Flavobacterium
-
3 rd ed. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt. Springer, New York. pp
-
rd ed. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt. Springer, New York. pp. 481-531.
-
(2006)
The prokaryotes, a handbook on the biology of bacteria
, vol.7
, pp. 481-531
-
-
Bernardet, J.-F.1
Bowman, J.2
-
4
-
-
36549086376
-
An introduction to the family Flavobacteriaceae
-
3rd ed. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt. Springer, New York. pp
-
rd ed. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt. Springer, New York. pp. 455-480.
-
(2006)
The prokaryotes, a handbook on the biology of bacteria
, vol.7
, pp. 455-480
-
-
Bernardet, J.-F.1
Nakagawa, Y.2
-
5
-
-
0038316604
-
Distribution of biosurfactant-producing bacteria in undisturbed and contaminated arid southwestern soils
-
PMID: 12788727, doi:10.1128/AEM.69.6.3280-3287.2003
-
Bodour, A.A., Drees, K.P., and Maier, R.M. 2003. Distribution of biosurfactant-producing bacteria in undisturbed and contaminated arid southwestern soils. Appl. Environ. Microbiol. 69: 3280-3287. doi:10.1128/AEM.69.6.3280-3287.2003. PMID: 12788727.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 3280-3287
-
-
Bodour, A.A.1
Drees, K.P.2
Maier, R.M.3
-
6
-
-
26444465087
-
Flavobacterium johnsoniae gliding motility genes identified by mariner mutagenesis
-
PMID:16199564, doi:10.1128/JB.187.20.6943-6952.2005
-
Braun, T.F., Khubbar, M.K., Saffarini, D.A., and McBride, M.J. 2005. Flavobacterium johnsoniae gliding motility genes identified by mariner mutagenesis. J. Bacteriol. 187: 6943-6952. doi:10.1128/JB.187.20.6943-6952.2005. PMID:16199564.
-
(2005)
J. Bacteriol
, vol.187
, pp. 6943-6952
-
-
Braun, T.F.1
Khubbar, M.K.2
Saffarini, D.A.3
McBride, M.J.4
-
7
-
-
0021273677
-
Isolation and characterization of nonspreading mutants of the gliding bacterium Cytophaga johnsonae
-
PMID:6735983
-
Chang, L.E., Pate, J.L., and Betzig, R.J. 1984. Isolation and characterization of nonspreading mutants of the gliding bacterium Cytophaga johnsonae. J. Bacteriol. 159: 26-35. PMID:6735983.
-
(1984)
J. Bacteriol
, vol.159
, pp. 26-35
-
-
Chang, L.E.1
Pate, J.L.2
Betzig, R.J.3
-
8
-
-
0017567857
-
The history, biology, and taxonomy of the Cytophaga group
-
PMID:413616, doi:10. 1139/m77-236
-
Christensen, P.J. 1977. The history, biology, and taxonomy of the Cytophaga group. Can. J. Microbiol. 23: 1599-1653. doi:10. 1139/m77-236. PMID:413616.
-
(1977)
Can. J. Microbiol
, vol.23
, pp. 1599-1653
-
-
Christensen, P.J.1
-
9
-
-
13444304367
-
The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis
-
doi:10.1093/nar/gki038
-
Cole, J.R., Chai, B., Farris, R.J., Wang, Q., Kulam, S.A., McGarrell, D.M., et al. 2005. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res. 33: D294-D296. doi:10.1093/nar/gki038.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam, S.A.5
McGarrell, D.M.6
-
10
-
-
0034068899
-
Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
-
PMID:10742262, doi:10. 1128/AEM.66.4.1692-1697.2000
-
Cottrell, M.T., and Kirchman, D.L. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl. Environ. Microbiol. 66: 1692-1697. doi:10. 1128/AEM.66.4.1692-1697.2000. PMID:10742262.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 1692-1697
-
-
Cottrell, M.T.1
Kirchman, D.L.2
-
11
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
doi:10.2307/2408678
-
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39: 783-791. doi:10.2307/2408678.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
12
-
-
0000685441
-
The road map to the manual
-
Edited by D.R. Boone and R.W. Castenholz. Springer-Verlag, New York. pp
-
Garrity, G.M., and Holt, J.G. 2001. The road map to the manual. In Bergey's manual of systematic bacteriology. Vol. 1. Edited by D.R. Boone and R.W. Castenholz. Springer-Verlag, New York. pp. 119-166.
-
(2001)
Bergey's manual of systematic bacteriology
, vol.1
, pp. 119-166
-
-
Garrity, G.M.1
Holt, J.G.2
-
13
-
-
0013184109
-
Occurrence of cytophagas in sewage plants
-
PMID:16345539
-
Glide, H. 1980. Occurrence of cytophagas in sewage plants. Appl. Environ. Microbiol. 39: 756-763. PMID:16345539.
-
(1980)
Appl. Environ. Microbiol
, vol.39
, pp. 756-763
-
-
Glide, H.1
-
14
-
-
65249167804
-
-
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41: 95-98.
-
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41: 95-98.
-
-
-
-
15
-
-
33144486722
-
Nitrous oxide re- ductase genes (nosZ) of denitrifying microbial populations in soil and the earthworm gut are phylogenetically similar
-
PMID:16461644, doi:10.1128/AEM.72.2. 1019-1026.2006
-
Horn, M.A., Drake, H.L., and Schramm, A. 2006. Nitrous oxide re- ductase genes (nosZ) of denitrifying microbial populations in soil and the earthworm gut are phylogenetically similar. Appl. Environ. Microbiol. 72: 1019-1026. doi:10.1128/AEM.72.2. 1019-1026.2006. PMID:16461644.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 1019-1026
-
-
Horn, M.A.1
Drake, H.L.2
Schramm, A.3
-
16
-
-
0036526711
-
Contribution of Cyto- phaga-like bacteria to the potential of turnover of carbon, nitrogen, and phosphorous by bacteria in the rhizosphere of barley (Hordeum vulgare L.)
-
PMID:12037608, doi:10.1007/ s00248-002-2006-z
-
Johansen, J.E., and Binnerup, S.J. 2002. Contribution of Cyto- phaga-like bacteria to the potential of turnover of carbon, nitrogen, and phosphorous by bacteria in the rhizosphere of barley (Hordeum vulgare L.). Microb. Ecol. 43: 298-306. doi:10.1007/ s00248-002-2006-z. PMID:12037608.
-
(2002)
Microb. Ecol
, vol.43
, pp. 298-306
-
-
Johansen, J.E.1
Binnerup, S.J.2
-
17
-
-
0000732090
-
Evolution of protein molecules
-
Edited by H.H. Munro. Academic Press, New York. pp
-
Jukes, T.H., and Cantor, C.R. 1969. Evolution of protein molecules. In Mammalian protein metabolism. Edited by H.H. Munro. Academic Press, New York. pp. 21-132.
-
(1969)
Mammalian protein metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
18
-
-
0001217288
-
The pigments of Brevibacterium linens: Aromatic carotenoids
-
doi:10.1016/S0031-9422(00)80090-4
-
Kohl, W.A., Achenbach, H., and Reichenbach, H. 1983. The pigments of Brevibacterium linens: aromatic carotenoids. Phyto-chemistry, 22: 207-210. doi:10.1016/S0031-9422(00)80090-4.
-
(1983)
Phyto-chemistry
, vol.22
, pp. 207-210
-
-
Kohl, W.A.1
Achenbach, H.2
Reichenbach, H.3
-
19
-
-
0030297594
-
Comparison of aerobic heterotrophic taxa isolated from four root do-mains of mature sugar beet (Beta vulgaris)
-
doi:10.1111/j.1574-6941.1996.tb00350.x
-
Lilley, A.K., Fry, J.C., Bailey, M.J., and Day, M.J. 1996. Comparison of aerobic heterotrophic taxa isolated from four root do-mains of mature sugar beet (Beta vulgaris). FEMS Microbiol. Ecol. 21: 231-242. doi:10.1111/j.1574-6941.1996.tb00350.x.
-
(1996)
FEMS Microbiol. Ecol
, vol.21
, pp. 231-242
-
-
Lilley, A.K.1
Fry, J.C.2
Bailey, M.J.3
Day, M.J.4
-
20
-
-
0036714783
-
Microbial cellulose utilization: Fundamentals and biotechnology
-
PMID:12209002, doi:10.1128/MMBR. 66.3.506-577.2002
-
Lynd, L.R., Weimer, P.J., van Zyl, W.H., and Pretorius, I.S. 2002. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol. Mol. Biol. Rev. 66: 506-577. doi:10.1128/MMBR. 66.3.506-577.2002. PMID:12209002.
-
(2002)
Microbiol. Mol. Biol. Rev
, vol.66
, pp. 506-577
-
-
Lynd, L.R.1
Weimer, P.J.2
van Zyl, W.H.3
Pretorius, I.S.4
-
21
-
-
0030733249
-
Temporal changes in the bacterial community of soil rhizosphere, and endorhiza associated with field-grown cucumber (Cucumis sativus L.)
-
PMID:9337416, doi:10.1007/s002489900050
-
Mahaffee, W.F., and Kloepper, J.W. 1997. Temporal changes in the bacterial community of soil rhizosphere, and endorhiza associated with field-grown cucumber (Cucumis sativus L.). Microb. Ecol. 34: 210-223. doi:10.1007/s002489900050. PMID:9337416.
-
(1997)
Microb. Ecol
, vol.34
, pp. 210-223
-
-
Mahaffee, W.F.1
Kloepper, J.W.2
-
22
-
-
19444364197
-
Flavobacterium frigidimaris sp. nov., isolated from Antarctic seawater
-
PMID:15997703, doi:10.1016/j.syapm.2005.01. 001
-
Nogi, Y., Soda, K., and Oikawa, T. 2005. Flavobacterium frigidimaris sp. nov., isolated from Antarctic seawater. Syst. Appl. Microbiol. 28: 310-315. doi:10.1016/j.syapm.2005.01. 001. PMID:15997703.
-
(2005)
Syst. Appl. Microbiol
, vol.28
, pp. 310-315
-
-
Nogi, Y.1
Soda, K.2
Oikawa, T.3
-
23
-
-
0001902087
-
Viability of soil bacteria: Optimization of plate-counting technique and comparison between total counts and plate counts within different size groups
-
Olsen, R.A., and Bakken, L.R. 1987. Viability of soil bacteria: optimization of plate-counting technique and comparison between total counts and plate counts within different size groups. Microb. Ecol. 13: 59-74.
-
(1987)
Microb. Ecol
, vol.13
, pp. 59-74
-
-
Olsen, R.A.1
Bakken, L.R.2
-
24
-
-
0033003863
-
The composition of bacterial populations in soil fractions differing in their degree of adherence to barley roots
-
doi:10.1016/ S0929-1393(99)00010-4
-
Olsson, S., and Persson, P. 1999. The composition of bacterial populations in soil fractions differing in their degree of adherence to barley roots. Appl. Soil Ecol. 12: 205-215. doi:10.1016/ S0929-1393(99)00010-4.
-
(1999)
Appl. Soil Ecol
, vol.12
, pp. 205-215
-
-
Olsson, S.1
Persson, P.2
-
25
-
-
0033066566
-
Barley rhizobacterial population characterised by fatty acid profiling
-
doi:10.1016/S0929-1393(99)00011-6
-
Olsson, S., Alström, S., and Persson, P. 1999. Barley rhizobacterial population characterised by fatty acid profiling. Appl. Soil Ecol. 12: 197-204. doi:10.1016/S0929-1393(99)00011-6.
-
(1999)
Appl. Soil Ecol
, vol.12
, pp. 197-204
-
-
Olsson, S.1
Alström, S.2
Persson, P.3
-
26
-
-
33747346476
-
Peptidoglycan from Bacillus cereus mediates commensalism with rhizosphere bacteria from the Cytophaga-Flavobacterium group
-
PMID:16885294, doi:10.1128/AEM.02928-05
-
Peterson, S.B., Dunn, A.K., Klimowicz, A.K., and Handelsman, J. 2006. Peptidoglycan from Bacillus cereus mediates commensalism with rhizosphere bacteria from the Cytophaga-Flavobacterium group. Appl. Environ. Microbiol. 72: 5421-5427. doi:10.1128/AEM.02928-05. PMID:16885294.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 5421-5427
-
-
Peterson, S.B.1
Dunn, A.K.2
Klimowicz, A.K.3
Handelsman, J.4
-
27
-
-
65249143037
-
-
AL, emend. In Bergey s manual of systematic bacteriology. 3. Edited by J.T. Staley, M.P. Bryant, N. Pfennig, and J.G. Holt. The Williams and Wilkins Co., Baltimore, Maryland. pp. 2015-2050.
-
AL, emend. In Bergey s manual of systematic bacteriology. Vol. 3. Edited by J.T. Staley, M.P. Bryant, N. Pfennig, and J.G. Holt. The Williams and Wilkins Co., Baltimore, Maryland. pp. 2015-2050.
-
-
-
-
28
-
-
0000561885
-
The order Cytophagales
-
Edited by A. Balows, H.G. Truper, H. Dworkin, W. Harder, and K.H. Schleifer. Springer-Verlag, Germany. pp
-
Reichenbach, H. 1992. The order Cytophagales. In The prokar- yotes. Vol. 2. Edited by A. Balows, H.G. Truper, H. Dworkin, W. Harder, and K.H. Schleifer. Springer-Verlag, Germany. pp. 3631-3675.
-
(1992)
The prokar- yotes
, vol.2
, pp. 3631-3675
-
-
Reichenbach, H.1
-
29
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
PMID:3447015
-
Saitou, N., and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. PMID:3447015.
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
30
-
-
0032827050
-
Gliding motility in bacteria: Insights from studies of Myxococcus xanthus
-
PMID:10477310
-
Spormann, A.M. 1999. Gliding motility in bacteria: insights from studies of Myxococcus xanthus. Microbiol. Mol. Biol. Rev. 63: 621-641. PMID:10477310.
-
(1999)
Microbiol. Mol. Biol. Rev
, vol.63
, pp. 621-641
-
-
Spormann, A.M.1
-
31
-
-
0037357787
-
Flavobacterium limicola sp. nov., a psychrophilic, organic polymer-degrading bacterium isolated from freshwater sediments
-
PMID:12710621, doi:10.1099/ijs.0.02369-0
-
Tamaki, H., Hanada, S., Kamagata, Y., Nakamura, K., Nomura, N., Nakano, K., and Matsumura, M. 2003. Flavobacterium limicola sp. nov., a psychrophilic, organic polymer-degrading bacterium isolated from freshwater sediments. Int. J. Syst. Evol. Microbiol. 53: 519-526. doi:10.1099/ijs.0.02369-0. PMID:12710621.
-
(2003)
Int. J. Syst. Evol. Microbiol
, vol.53
, pp. 519-526
-
-
Tamaki, H.1
Hanada, S.2
Kamagata, Y.3
Nakamura, K.4
Nomura, N.5
Nakano, K.6
Matsumura, M.7
-
32
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
PMID:7984417, doi:10.1093/nar/22.22.4673
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. doi:10.1093/nar/22.22.4673. PMID:7984417.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
33
-
-
0028509254
-
TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
-
PMID:7828077
-
Van de Peer, Y., and DeWachter, R. 1994. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 10: 569-570. PMID:7828077.
-
(1994)
Comput. Appl. Biosci
, vol.10
, pp. 569-570
-
-
Van de Peer, Y.1
DeWachter, R.2
-
34
-
-
18844458853
-
Isolation and taxonomic affiliation of bacteria able to degrade N-heterocyclic aromatic hydrocarbons
-
PMID: 15650851, doi:10.1007/s00253-004-1799-8
-
Willumsen, P.A., Johansen, J.E., Karlson, U., and Hansen, B.M. 2005. Isolation and taxonomic affiliation of bacteria able to degrade N-heterocyclic aromatic hydrocarbons. Appl. Microbiol. Biotechnol. 67: 420-428. doi:10.1007/s00253-004-1799-8. PMID: 15650851.
-
(2005)
Appl. Microbiol. Biotechnol
, vol.67
, pp. 420-428
-
-
Willumsen, P.A.1
Johansen, J.E.2
Karlson, U.3
Hansen, B.M.4
-
35
-
-
16844385416
-
Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic
-
PMID:15774636, doi:10.1099/ijs.0.63423-0
-
Yi, H., Oh, H.-M., Lee, J.-H., Kim, S.-J., and Chun, J. 2005. Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic. Int. J. Syst. Evol. Microbiol. 55: 637-641. doi:10.1099/ijs.0.63423-0. PMID:15774636.
-
(2005)
Int. J. Syst. Evol. Microbiol
, vol.55
, pp. 637-641
-
-
Yi, H.1
Oh, H.-M.2
Lee, J.-H.3
Kim, S.-J.4
Chun, J.5
-
36
-
-
0038315469
-
Flavobacterium xinjiangense sp. nov., and Flavobacterium omnivorum sp. nov., novel psychro- philes from the China No. 1 glacier
-
PMID:12807212, doi:10.1099/ijs.0.02310-0
-
Zhu, F., Wang, S., and Zhou, P. 2003. Flavobacterium xinjiangense sp. nov., and Flavobacterium omnivorum sp. nov., novel psychro- philes from the China No. 1 glacier. Int. J. Syst. Evol. Microbiol. 53: 853-857. doi:10.1099/ijs.0.02310-0. PMID:12807212.
-
(2003)
Int. J. Syst. Evol. Microbiol
, vol.53
, pp. 853-857
-
-
Zhu, F.1
Wang, S.2
Zhou, P.3
|