메뉴 건너뛰기




Volumn 113, Issue 11, 2009, Pages 3370-3378

Three-dimensional simulation of nanoindentation response of viral capsids. shape and size effects

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC FORCE MICROSCOPY; DEFORMATION; NANOINDENTATION; THREE DIMENSIONAL; THREE DIMENSIONAL COMPUTER GRAPHICS;

EID: 65249149718     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp8089352     Document Type: Article
Times cited : (18)

References (34)
  • 3
    • 33646547330 scopus 로고    scopus 로고
    • Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and strength
    • Michel, J. P.; Ivanovska, I. L.; Gibbons, M. M.; Klug, W. S.; Knobler, C. M.; Wuite, G. J.; Schmidt, C. F. Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and strength. Proc. Natl. Acad. Sci. U.S.A. 2006, 103 (16), 6184- 6189.
    • (2006) Proc. Natl. Acad. Sci. U.S.A , vol.103 , Issue.16 , pp. 6184-6189
    • Michel, J.P.1    Ivanovska, I.L.2    Gibbons, M.M.3    Klug, W.S.4    Knobler, C.M.5    Wuite, G.J.6    Schmidt, C.F.7
  • 5
    • 33745728287 scopus 로고    scopus 로고
    • Mechanical properties of murine leukemia virus particles: Effects and maturation
    • Kol, N.; Gladnikoff, M.; Barlam, D.; Shneck, R. Z.; Rein, A.; Rousso, I. Mechanical properties of murine leukemia virus particles: effects and maturation. Biophys. J. 2006, 91 (2), 767-774.
    • (2006) Biophys. J , vol.91 , Issue.2 , pp. 767-774
    • Kol, N.1    Gladnikoff, M.2    Barlam, D.3    Shneck, R.Z.4    Rein, A.5    Rousso, I.6
  • 7
    • 38149099289 scopus 로고    scopus 로고
    • DNA ejection from bacteriophage: Towards a general behavior for osmotic-suppression experiments
    • Castelnovo, M.; Evilevitch, A. DNA ejection from bacteriophage: Towards a general behavior for osmotic-suppression experiments. Eur. Phys. J. E: Soft Matter 2007, 24 (1), 9-18.
    • (2007) Eur. Phys. J. E: Soft Matter , vol.24 , Issue.1 , pp. 9-18
    • Castelnovo, M.1    Evilevitch, A.2
  • 9
    • 34250734534 scopus 로고    scopus 로고
    • Roos, W. H.; Ivanovska, I. L.; Evilevitch, A.; Wuite, G. J. Viral capsids: mechanical characteristics, genome packaging and delivery mechanisms. Cell. Mol. Life Sci. 2007, 64 (12), 1484-1497.
    • Roos, W. H.; Ivanovska, I. L.; Evilevitch, A.; Wuite, G. J. Viral capsids: mechanical characteristics, genome packaging and delivery mechanisms. Cell. Mol. Life Sci. 2007, 64 (12), 1484-1497.
  • 11
    • 0026572864 scopus 로고
    • Model for the differential stabilities of rhinovipus and poliovirus to mild acidic PH, based on electrostatics calculations
    • Warwicker, J. Model for the differential stabilities of rhinovipus and poliovirus to mild acidic PH, based on electrostatics calculations. J. Mol. Biol. 1992, 223 (1), 247-257.
    • (1992) J. Mol. Biol , vol.223 , Issue.1 , pp. 247-257
    • Warwicker, J.1
  • 12
    • 0000438267 scopus 로고    scopus 로고
    • Molecular dynamics simulation of a rhinovirus capsid under rotational symmetry boundary conditions
    • Yoneda, S.; Kitazawa, M.; Umeyama, H. Molecular dynamics simulation of a rhinovirus capsid under rotational symmetry boundary conditions. J. Comput. Chem. 1996, 17 (2), 191-203.
    • (1996) J. Comput. Chem , vol.17 , Issue.2 , pp. 191-203
    • Yoneda, S.1    Kitazawa, M.2    Umeyama, H.3
  • 13
    • 0032536161 scopus 로고    scopus 로고
    • Titration calculations of foot-and-mouth disease virus capsids and their stabilities as a function of pH
    • van Vlijmen, H. W. T.; Curry, S.; Schaefer, M.; Karplus, M. Titration calculations of foot-and-mouth disease virus capsids and their stabilities as a function of pH. J. Mol. Biol. 1998, 275 (2), 295-308.
    • (1998) J. Mol. Biol , vol.275 , Issue.2 , pp. 295-308
    • van Vlijmen, H.W.T.1    Curry, S.2    Schaefer, M.3    Karplus, M.4
  • 14
    • 0031961961 scopus 로고    scopus 로고
    • Energetics of quasiequivalence: Computational analysis of protein-protein interactions in icosahedral viruses
    • Reddy, V. S.; Giesing, H. A.; Morton, R. T.; Kumar, A.; Post, C. B.; Brooks, C. L.; Johnson, J. E. Energetics of quasiequivalence: Computational analysis of protein-protein interactions in icosahedral viruses. Biophys. J. 1998, 74 (1), 546-558.
    • (1998) Biophys. J , vol.74 , Issue.1 , pp. 546-558
    • Reddy, V.S.1    Giesing, H.A.2    Morton, R.T.3    Kumar, A.4    Post, C.B.5    Brooks, C.L.6    Johnson, J.E.7
  • 15
    • 0033517792 scopus 로고    scopus 로고
    • A theoretical model successfully identifies features of hepatitis B virus capsid assembly
    • Zlotnick, A.; Johnson, J. M.; Wingfield, P. W.; Stahl, S. J.; Endres, D. A theoretical model successfully identifies features of hepatitis B virus capsid assembly. Biochemistry 1999, 38 (44), 14644-14652.
    • (1999) Biochemistry , vol.38 , Issue.44 , pp. 14644-14652
    • Zlotnick, A.1    Johnson, J.M.2    Wingfield, P.W.3    Stahl, S.J.4    Endres, D.5
  • 16
    • 33644848399 scopus 로고    scopus 로고
    • Molecular dynamics simulations of the complete satellite tobacco mosaic virus
    • Freddolino, P. L.; Arkhipov, A. S.; Larson, S. B.; McPherson, A.; Schulten, K. Molecular dynamics simulations of the complete satellite tobacco mosaic virus. Structure 2006, 14 (3), 437-449.
    • (2006) Structure , vol.14 , Issue.3 , pp. 437-449
    • Freddolino, P.L.1    Arkhipov, A.S.2    Larson, S.B.3    McPherson, A.4    Schulten, K.5
  • 17
    • 84990912978 scopus 로고    scopus 로고
    • Virus shapes and buckling transitions in spherical shells
    • Lidmar, J.; Mirny, L.; Nelson, D. R. Virus shapes and buckling transitions in spherical shells. Phys. Rev. E 2003, 68 (5 Part 1), 051910.
    • (2003) Phys. Rev. E , vol.68 , Issue.5 PART 1 , pp. 051910
    • Lidmar, J.1    Mirny, L.2    Nelson, D.R.3
  • 18
    • 34548838615 scopus 로고    scopus 로고
    • Soft modes near the buckling transition of icosahedral shells
    • Widom, M.; Lidmar, J.; Nelson, D. R. Soft modes near the buckling transition of icosahedral shells. Phys. Rev. E 2007 76 (3 Part 1), 031911.
    • (2007) Phys. Rev. E , vol.76 , Issue.3 PART 1 , pp. 031911
    • Widom, M.1    Lidmar, J.2    Nelson, D.R.3
  • 19
    • 28844479080 scopus 로고    scopus 로고
    • Elasticity theory and shape transitions of viral shells
    • Nguyen, T. T.; Bruinsma, R. F.; Gelbart, W. M. Elasticity theory and shape transitions of viral shells. Phys. Rev. E 2005 72 (5 Part 1), 051923.
    • (2005) Phys. Rev. E , vol.72 , Issue.5 PART 1 , pp. 051923
    • Nguyen, T.T.1    Bruinsma, R.F.2    Gelbart, W.M.3
  • 20
    • 27244438043 scopus 로고    scopus 로고
    • Mechanical properties of viral capsids
    • Zandi, R.; Reguera, D. Mechanical properties of viral capsids. Phys. Rev. E 2005 72 (2 Part 1), 021917.
    • (2005) Phys. Rev. E , vol.72 , Issue.2 PART 1 , pp. 021917
    • Zandi, R.1    Reguera, D.2
  • 21
    • 33746751495 scopus 로고    scopus 로고
    • Mechanical deformation of spherical viruses with icosahedral symmetry
    • Vliegenthart, G. A.; Gompper, G. Mechanical deformation of spherical viruses with icosahedral symmetry. Biophys. J. 2006, 91 (3), 834- 841.
    • (2006) Biophys. J , vol.91 , Issue.3 , pp. 834-841
    • Vliegenthart, G.A.1    Gompper, G.2
  • 23
    • 33847646319 scopus 로고    scopus 로고
    • Nonlinear finite-element analysis of nanoindentation of viral capsids
    • Gibbons, M. M.; Klug, W. S. Nonlinear finite-element analysis of nanoindentation of viral capsids. Phys. Rev. E 2007 75 (3 Part 1), 031901.
    • (2007) Phys. Rev. E , vol.75 , Issue.3 PART 1 , pp. 031901
    • Gibbons, M.M.1    Klug, W.S.2
  • 24
    • 56049098784 scopus 로고    scopus 로고
    • Influence of nonuniform geometry on nanoindentation of viral capsids
    • Gibbons, M. M.; Klug, W. S. Influence of nonuniform geometry on nanoindentation of viral capsids. Biophys. J. 2008, 95, 3640-3649.
    • (2008) Biophys. J , vol.95 , pp. 3640-3649
    • Gibbons, M.M.1    Klug, W.S.2
  • 26
    • 0032712359 scopus 로고    scopus 로고
    • Adding the third dimension to virus life cycles: Three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs
    • 63
    • Baker, T. S.; Olson, N. H.; Fuller, S. D. Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiol Mol Biol ReV 1999, 63 (4), 862- 922.
    • Microbiol Mol Biol Re , vol.1999 , Issue.4 , pp. 862-922
    • Baker, T.S.1    Olson, N.H.2    Fuller, S.D.3
  • 27
    • 0027366430 scopus 로고
    • Structural transitions during maturation of bacteriophage lambda capsids
    • Dokland, T.; Murialdo, H. Structural transitions during maturation of bacteriophage lambda capsids. J. Mol. Biol. 1993, 233 (4), 682-694.
    • (1993) J. Mol. Biol , vol.233 , Issue.4 , pp. 682-694
    • Dokland, T.1    Murialdo, H.2
  • 28
    • 0015506484 scopus 로고    scopus 로고
    • Donelli, G.; Guglielmi, F.; Paoletti, L. Structure and physicochemical properties of bacteriophage G. I. Arrangement of protein subunits and contraction process of tail sheath. J. Mol. Biol. 1972, 71 (2), 113-125.
    • Donelli, G.; Guglielmi, F.; Paoletti, L. Structure and physicochemical properties of bacteriophage G. I. Arrangement of protein subunits and contraction process of tail sheath. J. Mol. Biol. 1972, 71 (2), 113-125.
  • 29
    • 0031012768 scopus 로고    scopus 로고
    • The conformation of DNA packaged in bacteriophage G
    • Sun, M.; Serwer, P. The conformation of DNA packaged in bacteriophage G. Biophys. J. 1997, 72 (2 Part 1), 958-963.
    • (1997) Biophys. J , vol.72 , Issue.2 PART 1 , pp. 958-963
    • Sun, M.1    Serwer, P.2
  • 31
    • 33646353426 scopus 로고    scopus 로고
    • Highly discriminatory binding of capsid-cementing proteins in bacteriophage L
    • Tang, L.; Gilcrease, E. B.; Casjens, S. R.; Johnson, J. E. Highly discriminatory binding of capsid-cementing proteins in bacteriophage L. Structure 2006, 14 (5), 837-845.
    • (2006) Structure , vol.14 , Issue.5 , pp. 837-845
    • Tang, L.1    Gilcrease, E.B.2    Casjens, S.R.3    Johnson, J.E.4
  • 32
    • 84906386197 scopus 로고    scopus 로고
    • personal communication, University of Pittsburgh, Pittsburgh, PA
    • Conway, J. personal communication, University of Pittsburgh, Pittsburgh, PA.
    • Conway, J.1
  • 33
    • 84906357493 scopus 로고    scopus 로고
    • private communication, University of Pittsburgh, Pittsburgh, PA
    • Conway, J.; Hendrix, R. private communication, University of Pittsburgh, Pittsburgh, PA.
    • Conway, J.1    Hendrix, R.2
  • 34
    • 84906372071 scopus 로고    scopus 로고
    • personal communication, Purdue University, West Lafayette, IN
    • Rossmann, M. personal communication, Purdue University, West Lafayette, IN.
    • Rossmann, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.