메뉴 건너뛰기




Volumn 2, Issue 4, 2008, Pages 1307-1331

Reconstructing the energy landscape of a distribution from Monte Carlo samples

(2)  Zhou, Qing a   Wong, Wing Hung a  

a NONE

Author keywords

Change point; Cluster tree; Connected component; Disconnectivity graph; Monte Carlo; Posterior distribution; Sequence segmentation; Sublevel set

Indexed keywords


EID: 65249096889     PISSN: 19326157     EISSN: 19417330     Source Type: Journal    
DOI: 10.1214/08-AOAS196     Document Type: Article
Times cited : (10)

References (32)
  • 1
    • 33845331754 scopus 로고    scopus 로고
    • Discussion of "Equi-energy sampler" by Kou, Zhou and Wong
    • Atchadé, Y. F. and Liu, J. S. (2006). Discussion of "Equi-energy sampler" by Kou, Zhou and Wong. Ann. Statist. 34 1620-1628.
    • (2006) Ann. Statist , vol.34 , pp. 1620-1628
    • Atchadé, Y.F.1    Liu, J.S.2
  • 2
    • 0000370391 scopus 로고    scopus 로고
    • The topology of multidimensional potential energy surface: Theory and application to peptide structure and kinetics
    • Becker, O. M. and Karplus, M. (1997). The topology of multidimensional potential energy surface: Theory and application to peptide structure and kinetics. J. Chemical Physics 106 1495-1517.
    • (1997) J. Chemical Physics , vol.106 , pp. 1495-1517
    • Becker, O.M.1    Karplus, M.2
  • 3
    • 0000106469 scopus 로고
    • Multicanonical algorithms for 1st order phase-transitions
    • Berg, B. A. and Neuhaus, T. (1991). Multicanonical algorithms for 1st order phase-transitions. Phys. Lett. B 267 249-253.
    • (1991) Phys. Lett. B , vol.267 , pp. 249-253
    • Berg, B.A.1    Neuhaus, T.2
  • 4
    • 4444274988 scopus 로고    scopus 로고
    • A Bayesian approach to DNA sequence segmentation
    • Boys, R. J. and Henderson, D. A. (2004). A Bayesian approach to DNA sequence segmentation. Biometrics 60 573-588.
    • (2004) Biometrics , vol.60 , pp. 573-588
    • Boys, R.J.1    Henderson, D.A.2
  • 5
    • 33645683978 scopus 로고    scopus 로고
    • Global optimization and folding pathways of selected α-helical proteins
    • Carr, J. M. and Wales, D. J. (2005). Global optimization and folding pathways of selected α-helical proteins. J. Chemical Physics 123 234901.
    • (2005) J. Chemical Physics , vol.123 , pp. 234901
    • Carr, J.M.1    Wales, D.J.2
  • 6
    • 0037460544 scopus 로고    scopus 로고
    • Free energy landscapes of model peptides and proteins
    • Evans, D. A. and Wales, D. J. (2003). Free energy landscapes of model peptides and proteins. J. Chemical Physics 118 3891-3897.
    • (2003) J. Chemical Physics , vol.118 , pp. 3891-3897
    • Evans, D.A.1    Wales, D.J.2
  • 7
    • 3242681886 scopus 로고    scopus 로고
    • Folding of the GB1 hairpin peptide from discrete path sampling
    • Evans, D. A. and Wales, D. J. (2004). Folding of the GB1 hairpin peptide from discrete path sampling. J. Chemical Physics 121 1080-1090.
    • (2004) J. Chemical Physics , vol.121 , pp. 1080-1090
    • Evans, D.A.1    Wales, D.J.2
  • 8
    • 0033200608 scopus 로고    scopus 로고
    • Energy landscapes, supergraphs, and folding funnels in spin systems
    • Garstecki, P., Hoang, T. X. and Cieplak, M. (1999). Energy landscapes, supergraphs, and folding funnels in spin systems. Phys. Rev. E 60 3219-3226.
    • (1999) Phys. Rev. E , vol.60 , pp. 3219-3226
    • Garstecki, P.1    Hoang, T.X.2    Cieplak, M.3
  • 9
    • 84950453304 scopus 로고
    • Sampling-based approaches to calculating marginal densities
    • Gelfand, A. E. and Smith, A. F. M. (1990). Sampling-based approaches to calculating marginal densities. J. Amer. Statist. Assoc. 85 398-409.
    • (1990) J. Amer. Statist. Assoc , vol.85 , pp. 398-409
    • Gelfand, A.E.1    Smith, A.F.M.2
  • 10
    • 0021518209 scopus 로고
    • Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images
    • Geman, S. and Geman, D. (1984). Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images. IEEE Trans. Pattern Analysis and Machine Intelligence 6 721-741.
    • (1984) IEEE Trans. Pattern Analysis and Machine Intelligence , vol.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 11
    • 0002795650 scopus 로고
    • Markov chain Monte Carlo maximum likelihood
    • E. M. Keramidas, ed.), Fairfax Station, VA
    • Geyer, C. J. (1991). Markov chain Monte Carlo maximum likelihood. In Computing Science and Statistics: Proc. 23rd Symp. Interface (E. M. Keramidas, ed.) 156-163. Fairfax Station, VA.
    • (1991) Computing Science and Statistics: Proc. 23rd Symp. Interface , pp. 156-163
    • Geyer, C.J.1
  • 12
    • 0000788484 scopus 로고
    • Serial and parallel genetic algorithms as function optimizers
    • San Mateo, CA
    • Gordon, V. S. and Whitley, D. (1993). Serial and parallel genetic algorithms as function optimizers. In Proc. 5th Int. Conf. Genetic Algorithms 177-183. San Mateo, CA.
    • (1993) Proc. 5th Int. Conf. Genetic Algorithms , pp. 177-183
    • Gordon, V.S.1    Whitley, D.2
  • 14
    • 0001482122 scopus 로고
    • Consistency of single linkage for high-density clusters
    • Hartigan, J. A. (1981). Consistency of single linkage for high-density clusters. J. Amer. Statist. Assoc. 76 388-394.
    • (1981) J. Amer. Statist. Assoc , vol.76 , pp. 388-394
    • Hartigan, J.A.1
  • 15
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings, W. K. (1970). Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57 97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 16
    • 11944274075 scopus 로고
    • Monte Carlo simulation and global optimization without parameters
    • Hesselbo, B. and Stinchcombe, R. B. (1995). Monte Carlo simulation and global optimization without parameters. Phys. Rev. Lett. 74 2151-2155.
    • (1995) Phys. Rev. Lett , vol.74 , pp. 2151-2155
    • Hesselbo, B.1    Stinchcombe, R.B.2
  • 18
    • 33846221985 scopus 로고    scopus 로고
    • Segmenting eukaryotic genomes with the generalized Gibbs sampler
    • Keith, J. M. (2006). Segmenting eukaryotic genomes with the generalized Gibbs sampler. J. Computat. Biol. 13 1369-1383.
    • (2006) J. Computat. Biol , vol.13 , pp. 1369-1383
    • Keith, J.M.1
  • 19
    • 33748779178 scopus 로고    scopus 로고
    • Equi-energy sampler with applications in statistical inference and statistical mechanics
    • Kou, S. C., Zhou, Q. and Wong, W. H. (2006). Equi-energy sampler with applications in statistical inference and statistical mechanics. Ann. Statist. 34 1581-1619.
    • (2006) Ann. Statist , vol.34 , pp. 1581-1619
    • Kou, S.C.1    Zhou, Q.2    Wong, W.H.3
  • 20
    • 0037115811 scopus 로고    scopus 로고
    • Free energy disconnectivity graphs: Application to peptide models
    • Krivov, S. V. and Karplus, M. (2002). Free energy disconnectivity graphs: Application to peptide models. J. Chemical Physics 117 10894-10903.
    • (2002) J. Chemical Physics , vol.117 , pp. 10894-10903
    • Krivov, S.V.1    Karplus, M.2
  • 21
    • 29144446035 scopus 로고    scopus 로고
    • Generalized Wang-Landau algorithm for Monte Carlo computation
    • Liang, F. (2005). Generalized Wang-Landau algorithm for Monte Carlo computation. J. Amer. Statist. Assoc. 100 1311-1327.
    • (2005) J. Amer. Statist. Assoc , vol.100 , pp. 1311-1327
    • Liang, F.1
  • 22
    • 35348968551 scopus 로고    scopus 로고
    • Continuous contour Monte Carlo for marginal density estimation with an application to a spatial statistical model
    • Liang, F. (2007). Continuous contour Monte Carlo for marginal density estimation with an application to a spatial statistical model. J. Comput. Graph. Statist. 16 608-632.
    • (2007) J. Comput. Graph. Statist , vol.16 , pp. 608-632
    • Liang, F.1
  • 23
    • 33947215681 scopus 로고    scopus 로고
    • Stochastic approximation in Monte Carlo computation
    • Liang, F., Liu, C. and Carroll, J. (2007). Stochastic approximation in Monte Carlo computation. J. Amer. Statist. Assoc. 102 305-320.
    • (2007) J. Amer. Statist. Assoc , vol.102 , pp. 305-320
    • Liang, F.1    Liu, C.2    Carroll, J.3
  • 24
    • 0033059370 scopus 로고    scopus 로고
    • Bayesian inference on biopolymer models
    • Liu, J. S. and Lawrence, C. E. (1999). Bayesian inference on biopolymer models. Bioinformatics 15 38-52.
    • (1999) Bioinformatics , vol.15 , pp. 38-52
    • Liu, J.S.1    Lawrence, C.E.2
  • 26
    • 35148901361 scopus 로고    scopus 로고
    • Nested sampling for general Bayesian computation
    • Skilling, J. (2006). Nested sampling for general Bayesian computation. Bayesian Analysis 1 833-860.
    • (2006) Bayesian Analysis , vol.1 , pp. 833-860
    • Skilling, J.1
  • 27
    • 0037560966 scopus 로고    scopus 로고
    • Estimating the cluster tree of a density by analyzing the minimal spanning tree of a sample
    • Stuezle, W. (2003). Estimating the cluster tree of a density by analyzing the minimal spanning tree of a sample. J. Classification 20 25-47.
    • (2003) J. Classification , vol.20 , pp. 25-47
    • Stuezle, W.1
  • 28
    • 84950758368 scopus 로고
    • The calculation of posterior distributions by data augmentation
    • Tanner, M. A. and Wong, W. H. (1987). The calculation of posterior distributions by data augmentation. J. Amer. Statist. Assoc. 82 528-550.
    • (1987) J. Amer. Statist. Assoc , vol.82 , pp. 528-550
    • Tanner, M.A.1    Wong, W.H.2
  • 29
    • 0000576595 scopus 로고
    • Markov chains for exploring posterior distributions
    • Tierney, L. (1994). Markov chains for exploring posterior distributions. Ann. Statist. 22 1701-1728.
    • (1994) Ann. Statist , vol.22 , pp. 1701-1728
    • Tierney, L.1
  • 30
    • 12944264524 scopus 로고    scopus 로고
    • The energy landscape as a unifying theme in molecular science
    • Wales, D. J. (2005). The energy landscape as a unifying theme in molecular science. Philos. Trans. Roy. Soc. A 363 357-377.
    • (2005) Philos. Trans. Roy. Soc. A , vol.363 , pp. 357-377
    • Wales, D.J.1
  • 31
    • 6644221271 scopus 로고    scopus 로고
    • Efficient multiple-range random-walk algorithm to calculate the density of states
    • Wang, F. and Landau, D. P. (2001). Efficient multiple-range random-walk algorithm to calculate the density of states. Phys. Rev. Lett. 86 2050-2053.
    • (2001) Phys. Rev. Lett , vol.86 , pp. 2050-2053
    • Wang, F.1    Landau, D.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.