Helicase dependent OnChip-amplification and its use in multiplex pathogen detection

Clinica Chimica Acta

Volumn 403, Issue 1-2, 2009, Pages 244-248

  Andresen, Dennie ^a   von Nickisch Rosenegk, Markus ^a   Bier, Frank F ^a,b  

^a FRAUNHOFER INSTITUTE FOR BIOMEDICAL ENGINEERING   (Germany)

^b UNIVERSITY OF POTSDAM   (Germany)

Author keywords

DNA microarray; HDA; Helicase dependent amplification; Multiplex detection; OnChip amplification

Indexed keywords

HELICASE;

ARTICLE; CONTROLLED STUDY; GENE AMPLIFICATION; HELICASE DEPENDENT ONCHIP AMPLIFICATION; MICROARRAY ANALYSIS; MICROORGANISM DETECTION; NEISSERIA GONORRHOEAE; NONHUMAN; NUCLEIC ACID ANALYSIS; PRIORITY JOURNAL; STAPHYLOCOCCUS AUREUS;

BACTERIAL PROTEINS; DNA HELICASES; METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS; MICROARRAY ANALYSIS; MICROCHIP ANALYTICAL PROCEDURES; NEISSERIA GONORRHOEAE; NUCLEIC ACID AMPLIFICATION TECHNIQUES;

STAPHYLOCOCCUS AUREUS;

EID: 64849101995     PISSN: 00098981     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cca.2009.03.021     Document Type: Article

References (20)

1. Vincent M., Xu Y., and Kong H. Helicase-dependent isothermal DNA amplification. EMBO Rep 5 (2004) 795-800
2. An L., Kong H., Tang W., Ranalli T., Kim H., and Wytiaz J. Characterization of a thermostable UvrD helicase and its participation in helicase-dependent amplification. J Biol Chem 280 (2005) 28952-28958
3. Goldmeyer J., Kong H., and Tang W. Development of a novel one-tube isothermal reverse transcription thermophilic helicase-dependent amplification platform for rapid RNA detection. J Mol Diagnostics 9 (2007) 639-644
4. Goldmeyer J., Li H., McCormac M., et al. Identification of Staphylococcus aureus and determination of methicillin resistance directly from positive blood cultures by isothermal amplification and a disposable detection device. J Clin Microbiol (2008) 46
5. Cabrera M., Jaber M., Dugas V., et al. Implementation of DNA Chips obtained by microprojection for diagnostic and personalized medicine. Cell Mol Biol 50 (2004) 225-232
6. Kewal K.K. Applications of biochips: from diagnostics to personalized medicine. Curr Opin Drug Discov Dev 7 (2004) 285-289
7. Szemes M., Bonants P., de Weerdt M., Baner J., Landegren U., and Schoen C.D. Diagnostic application of padlock probes-multiplex detection of plant pathogens using universal microarrays. Nucleic Acids Res 33 (2005) e70
8. Andresen H., Grötzinger C., Zarse K., et al. Peptide microarrays with the site-specifically immobilized synthetic peptides for antibody diagnostics. Sens Actuators, B, Chem 113 (2006) 655-663
9. Andresen H., Grotzinger C., Zarse K., Kreuzer O.J., Ehrentreich-Forster E., and Bier F.F. Functional peptide microarrays for specific and sensitive antibody diagnostics. Proteomics 6 (2006) 1376-1384
10. von Nickisch-Rosenegk M., Marschan X., Andresen D., Abraham A., Heise C., and Bier F.F. On-chip PCR amplification of very long templates using immobilized primers on glassy surfaces. Biosens Bioelectron 20 (2005) 1491-1498
11. Bier F.F., Andresen D., and Walter A. DNA based bio-micro-electronic mechanical systems. In: Urban G. (Ed). BioMEMS (2006), Springer, Berlin 372
12. Steffen J., von Nickisch-Rosenegk M., and Bier F.F. In vitro transcription of a whole gene on a surface-coupled template. Lab Chip 5 (2005) 665-668
13. von Nickisch-Rosenegk M., Marschan X., Andresen D., and Bier F.F. Reverse transcription-polymerase chain reaction on a microarray: the integrating concept of "active arrays". Anal Bioanal Chem 391 (2008) 1671-1678
14. Walker G.T., Fraiser M.S., Schram J.L., Little M.C., Nadeau J.G., and Malinowski D.P. Strand displacement amplification - an isothermal, in vitro DNA amplification technique. Nucleic Acids Res 20 (1992) 1691-1696
15. Walker G.T., Nadeau J.G., Spears P.A., Schram J.L., Nycz C.M., and Shank D.D. Multiplex strand displacement amplification (SDA) and detection of DNA sequences from Mycobacterium tuberculosis and other mycobacteria. Nucleic Acids Res 22 (1994) 2670-2677
16. Westin L., Xu X., Miller C., Wang L., Edman C.F., and Nerenberg M. Anchored multiplex amplification on a microelectronic chip array. Nat Biotechnol 18 (2000) 199-204
17. Hatch A., Sano T., Misasi J., and Smith C.L. Rolling circle amplification of DNA immobilized on solid surfaces and its application to multiplex mutation detection. Genet Anal 15 (1999) 35-40
18. Motre A., Li Y., and Kong H. Enhancing helicase-dependent amplification by fusing the helicase with the DNA polymerase. Gene 420 (2008) 17-22
19. Ballantyne K.N., van Oorschot R.A.H., and Mitchell R.J. Locked nucleic acids in PCR primers increase sensitivity and performance. Genomics 91 (2008) 301-305
20. Vora G.J., Meador C.E., Anderson G.P., and Taitt C.R. Comparison of detection and signal amplification methods for DNA microarrays. Mol Cell Probes 22 5-6 (2008) 294-300