Discriminating the intraerythrocytic lifecycle stages of the malaria parasite using synchrotron FT-IR microspectroscopy and an artificial neural network

Analytical Chemistry

Volumn 81, Issue 7, 2009, Pages 2516-2524

  Webster, Grant T ^a   De Villiers, Katherine A ^b   Egan, Timothy J ^b   Deed, Samantha ^c   Tilley, Leann ^c   Tobin, Mark J ^d   Bambery, Keith R ^a   McNaughton, Don ^a   Wood, Bayden R ^a  

^a MONASH UNIVERSITY   (Australia)

^b UNIVERSITY OF CAPE TOWN   (South Africa)

^c LA TROBE UNIVERSITY   (Australia)

^d AUSTRALIAN SYNCHROTRON   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ACYL CHAINS; ARTIFICIAL NEURAL NETWORKS; CONTROL CELLS; ESTER CARBONYLS; FOURIER TRANSFORM INFRARED; FTIR MICRO SPECTROSCOPIES; HEMOZOIN; INFECTED CELLS; LIFE-CYCLE STAGES; LIPID COMPOSITIONS; MALARIA PARASITES; MALARIAL PARASITES; PARASITE-; PLASMODIUM FALCIPARUM; PRINCIPAL COMPONENTS ANALYSIS; SATURATED FATTY ACIDS; SPECTRAL PROFILES; SPECTRUM DISPLAYS; STRETCHING REGIONS; UNSATURATED FATTY ACIDS; VISUAL INSPECTIONS;

ACIDS; BACKPROPAGATION; ESTERS; FATTY ACIDS; FOURIER TRANSFORMS; LIFE CYCLE; LIPIDS; NEURAL NETWORKS; PRINCIPAL COMPONENT ANALYSIS; SYNCHROTRONS; VISUAL COMMUNICATION;

INFRARED SPECTROSCOPY;

UNSATURATED FATTY ACID;

ARTICLE; ARTIFICIAL NEURAL NETWORK; CELL CULTURE; CELL CYCLE; ERYTHROCYTE; INFECTION; INFRARED SPECTROSCOPY; LIPID COMPOSITION; NONHUMAN; PLASMODIUM; PRINCIPAL COMPONENT ANALYSIS; SCHIZONT; SYNCHROTRON; TROPHOZOITE;

ANIMALS; BIOLOGICAL MARKERS; ERYTHROCYTES; HEMEPROTEINS; HUMANS; LIFE CYCLE STAGES; LIPID METABOLISM; LIPIDS; MALARIA; NEURAL NETWORKS (COMPUTER); PLASMODIUM FALCIPARUM; PRINCIPAL COMPONENT ANALYSIS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; SYNCHROTRONS;

EID: 64849093931     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac802291a     Document Type: Article

References (55)

1. Greenwood, B.; Mutabingwa, T. Nature 2002, 415, 670-672.
2. Sachs, J.; Malaney, P. Nature 2002, 415, 680-685.
3. Schmitt, T. H.; Frezzatti, W. A., Jr.; Schreier, S. Arch. Biochem. Biophys. 1993, 307, 96-103.
4. Sugioka, Y.; Suzuki, M. Biochim. Biophys. Acta 1991, 1074, 19-24.
5. Slater, A. F. G.; Swiggard, W. J.; Orton, B. R.; Flitter, W. D.; Goldberg, D. E.; Cerami, A.; Henderson, G. B. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 325-329.
6. Bohle, D. S.; Conklin, B. J.; Cox, D.; Madsen, S. K.; Paulson, S.; Stephens, P. W.; Yee, G. T. Am. Chem. Soc. Symp. Ser. 1994, 572, 497-515.
7. Pagola, S.; Stephens, P. W.; Bohle, D. S.; Kosar, A. D.; Madsen, S. K. Nature 2000, 404, 307-310.
8. Deegan, T.; Maegraith, B. G. Ann. Trop. Med. Parasitol. 1956, 50, 194- 211.
9. Fitch, C. D.; Cai, G.-z.; Chen, Y.-F.; Shoemaker, J. D. Biochim. Biophys. Acta 1999, 1454, 31-37.
10. Jackson, K. A.; Klonis, N.; Ferguson, D. J. P.; Adisa, A.; Dogovski, C.; Tilley, L. Mol. Microbiol. 2004, 54, 109-122.
11. Oliveira, M. F.; Kycia, S. W.; Gomez, A.; Kosar, A. J.; Bohle, D. S.; Hempelmann, E.; Menezes, D.; Vanier-Santos, M. A.; Oliveira, P. L.; Ferreira, S. T. FEBS Lett. 2005, 579, 6010-6016.
12. Egan, T. J.; Chen, J. Y.-J.; de Villiers, K. A.; Mabotha, T. E.; Naidoo, K. J.; Ncokazi, K. K.; Langford, S. J.; McNaughton, D.; Pandiancherri, S.; Wood, B. R. FEBS Lett. 2006, 580, 5105-5110.
13. Pisciotta, J. M.; Coppens, I.; Tripathi, A. K.; Scholl, P. F.; Shuman, J.; Bajad, S.; Shulaev, V.; Sullivan, D. J., Jr. Biochem. J. 2007, 402, 197-204.
14. Richards, D. F.; Hunter, D. T.; Janis, B. Am. J. Clin. Pathol. 1969, 51, 280-283.
15. Sodeman, T. M. Am. J. Trop. Med. Hyg. 1970, 19, 40-42.
16. Shute, G. T.; Sodeman, T. M. Bull. W.H.O. 1973, 48, 591-596.
17. Makler, M. T.; Ries, L. K.; Ries, J.; Horton, R. J.; Hinrichs, D. J. Am. J. Trop. Med. Hyg. 1991, 44, 11-16.
18. Hanscheid, T. Clin. Lab. Haematol. 1999, 21, 235-245.
19. Humar, A.; Ohrt, C.; Harrington, M. A.; Pillai, D.; Kain, K. C. Am. J. Trop. Med. Hyg. 1997, 56, 44-48.
20. Humar, A.; Harrington, M. A.; Kain, K. C. Trans. R. Soc. Trop. Med. Hyg. 1997, 91, 406-409.
21. Makler, M. T.; Palmer, C. J.; Ager, A. L. Ann. Trop. Med. Parasitol. 1998, 92, 419-433.
22. Shiff, C. J.; Minjas, J. N.; Premji, Z. Parasitol. Today 1994, 10, 494-495.
23. Garcia, M.; Kirimoama, S.; Marlborough, D.; Leafasia, J.; Rieckmann, K. H. Lancet 1996, 347, 1549.
24. van Vianen, P. H.; van Engen, A.; Thaithong, S.; van der Keur, M.; Tanke, H. J.; van der Kaay, H. J.; Mons, B.; Janse, C. J. Cytometry 1996, 14, 276- 280.
25. Demirev, P. A.; Feldman, A. B.; Kongkasuriyachai, D.; Scholl, P.; Sullivan, D. J., Jr.; Kumar, N. Anal. Chem. 2002, 74, 3262-3266.
26. Bre'mard, C.; Girerd, P.; Kowalewski, P.; Merlin, J. C.; Moreau, S. Appl. Spectrosc. 1993, 47, 1837-1842.
27. Wood, B. R.; McNaughton, D. Expert Rev. Proteomics 2006, 3, 525-544.
28. Ong, C. W.; Shen, Z. X.; Ang, K. K. H.; Kara, U. A. K.; Tang, J. Appl. Spectrosc. 2002, 56, 1126-1131.
29. Ong, C. W.; Shen, Z. X.; Ang, K. K. H.; Kara, U. A. K.; Tang, S. H. Appl. Spectrosc. 1999, 53, 1097-1101.
30. Wood, B. R.; Langford, S. J.; Cooke, B. M.; Lim, J.; Glenister, F. K.; Duriska, M.; Unthank, J. K.; McNaughton, D. J. Am. Chem. Soc. 2004, 126, 9233- 9239.
31. Wood, B. R.; Tait, B.; McNaughton, D. Appl. Spectrosc. 2000, 54, 353- 359.
32. CÎntǎ-PÎnzaru, S.; Peica, N.; Küstner, B.; Schlücker, S.; Schmitt, M.; Frosch, T.; Faber, J. H.; Bringmann, G.; Popp, J. J. Raman Spectrosc. 2006, 37, 326-334.
33. Frosch, T.; Kustner, B.; Schlücker, S.; Szeghalmi, A.; Schmitt, M.; Kiefer, W.; Popp, J. J. Raman Spectrosc. 2004, 35, 819-821.
34. Trager, W.; Jensen, J. B. Science 1976, 193, 673-675.
35. Solomonov, I.; Osipova, M.; Feldman, Y.; Baehtz, C.; Kjaer, K.; Robinson, I. K.; Webster, G. T.; McNaughton, D.; Wood, B. R.; Weissbuch, I.; Leiserowitz, L. J. Am. Chem. Soc. 2007, 129, 2615-2627.
36. Martens, H.; Starks, E. J. Pharm. Biomed. Anal. 1991, 9, 625-635.
37. Despagne, F.; Massart, D. L. Analyst 1998, 123, 157R-178R.
38. Hush, D. R.; Horne, B. G. IEEE Signal Process. Mag. 1993, 1, 8-39.
39. Egan, T. J.; Ross, D. C.; Adams, P. A. FEBS Lett. 1994, 352, 54-57.
40. Parker, F. S. Application of Infrared Spectroscopy in Biochemistry, Biology and Medicine; Plenum: New York, 1971.
41. Miyazawa, T.; Shimanouchi, T.; Mizushima, S. J. Chem. Phys. 1956, 24, 408-418.
42. Miyazawa, T.; Shimanouchi, T.; Mizushima, S. J. Chem. Phys. 1958, 29, 611-616.
43. Susi, H., Ed. Structure and Stability of Biological Macromolecules; Marcel Dekker: New York, 1969.
44. Surewicz, W. K.; Mantsch, H. H. Biochim. Biophys. Acta 1988, 952, 115- 130.
45. Benedetti, E.; Bramanti, E.; Papineschi, F.; Rossi, I.; Benedetti, E. Appl. Spectrosc. 1997, 51, 792-797.
46. Susi, H.; Ard, J. S. Spectrochim. Acta 1971, 27A, 1549-1562.
47. Carr, G. L. Rev. Sci. Instrum. 2001, 72, 1613-1619.
48. Ramaswamy, S.; Rajaram, R. K.; Ramakrishnan, V. J. Raman Spectrosc. 2002, 33, 689-698.
49. Cao, X.; Fischer, G. J. Mol. Struct. 2000, 519, 153-163.
50. Shukla, N.; Svedberg, E. B.; Ell, J. Colloids Surf., A 2007, 301, 113-116.
51. Sinclair, R. G.; Mckay, A. F.; Myers, G. S.; Jones, R. N. J. Am. Chem. Soc. 1952, 74, 2578-2585.
52. Lee, D. H.; Condrate, R.; Lacourse, W. C. J. Mater. Sci. 2000, 35, 4961- 4970.
53. Vogel-Weill, C.; Gruger, A. Spectrochim. Acta., Part A 1996, 52, 1737- 1755.
54. Ferreri, C.; Panagiotaki, M.; Chatgilialoglu, C. Mol. Biotechnol. 2007, 37, 19-25.
55. Wood, B. R.; Langford, S. J.; Cooke, B. M.; Glenister, F. K.; Lim, J.; McNaughton, D. FEBS Lett. 2003, 554, 247-252.