Comparison of DNA extraction protocols of fish fin and larvae samples: Modified salt (NaCl) extraction

Ciencia e Investigacion Agraria

Volumn 35, Issue 1, 2008, Pages 65-74

  Lopera Barrero, Nelson M ^a   Povh, Jayme A ^a   Ribeiro, Ricardo P ^a   Gomes, Patricia C ^a   Jacometo, Carolina B ^a   da Silva, Taís L ^a  

^a STATE UNIVERSITY OF MARINGÁ   (Brazil)

Author keywords

Fish studies; Genetic research; Microsatellites; PCR amplification; RAPD

Indexed keywords

BRYCON ORBIGNYANUS; LEPORINUS ELONGATUS; OREOCHROMIS NILOTICUS; PIARACTUS MESOPOTAMICUS; PROCHILODUS LINEATUS;

EID: 64749105656     PISSN: 03045609     EISSN: 07181620     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. Adcock, G.L., B. Ramírez, L. Hauser, P. Smith, and G.R. Carvalho. 2000. Screening of DNA polymorphisms in samples of archived scales from New Zealand snapper. Journal of Fish Biology 56:1283-1287.
2. Aho, T., J. Rönn, J. Piironen, and M. Björklund. 2006. Impacts of effective population size on genetic diversity in hatchery reared brown trout (Salmo trutta L.) populations. Aquaculture 253:244-248.
3. Aljanabi, S.M., and I. Martinez. 1997. Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Research 25:4692-4693.
4. Aranishi, F. 2006. Single fish egg DNA extraction for PCR amplification. Conservation Genetics 7:153-156.
5. Bardakci, F., and D.O.F. Skibinski. 1994. Application of the RAPD technique in tilapia fish: Species and subspecies identification. Heredity 73:117-123.
6. Basavaraju, Y., D.T. Prasad, K. Rani, S.P. Kumar, U.D. Naika, S. Jahageerdar, P.P. Srivastava, D.J. Penman, and G.C. Mair. 2007. Genetic diversity in common carp stocks assayed by random-amplified polymorphic DNA markers. Aquaculture Research 38:147-155.
7. Bassam, B.J., G. Caetano-Anollés, and P.M. Gresshoff. 1991. A fast and sensitive silver staining for DNA in polyacrylamide gels. Analytical Biochemistry 196:80-83.
8. Calcagnotto, D., M. Russello, and R. DeSalle. 2001. Isolation and characterization of microsatellite loci in Piaractus mesopotamicus and their applicability in other Serrasalminae fish. Molecular Ecology Notes 1:245-247.
9. Chakraborty, A., M. Sakai, and Y. Iwatsuki. 2006. Museum fish specimens and molecular taxonomy: A comparative study on DNA extraction protocols and preservation techniques. Journal of Applied Ichthyology 22:160-166.
10. Cummings, A.S., and G.H. Thorgaard. 1994. Extraction of DNA from fish blood and sperm. Biotechniques 17:426.
11. Ferrara, G.B., B. Murgia, A.M. Parodi, L. Valisano, C. Cerrano, G. Palmisano, G. Bavestrello, and M. Sara. 2006. The assessment of DNA from marine organisms via a modified salting-out protocol. Cellular and Molecular Biology Letters 11:155-160.
12. Gomes, P.C. 2007. Diversidade genética de três populações de piapara (Leporinus elongatus), utilizando marcadores moleculares. Dissertação (Mestrado em Zootecnia), Programa de Pós-Graduação em Zootecnia, Universidade Estadual de Maringá, Maringá, Brasil. 75 p.
13. Liu, Z.J., and J.F. Cordes. 2004. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238:1-37.
14. Livia, L., P. Antonella, L. Hovirag, N. Mauro, and F. Panara. 2006. A nondestructive, rapid, reliable and inexpensive method to sample, store and extract high-quality DNA from fish body mucus and buccal cells. Molecular Ecology Notes 6:257-260.
15. Lopera-Barrero, N.M. 2005. Diversidade genética de populações de piracanjuba (Brycon orbignyanus) com a técnica de RAPD. Dissertação (Mestrado em Zootecnia), Programa de Pós-Graduação em Zootecnia, Universidade Estadual de Maringá, Maringá, Brasil. 45 p.
16. Lopera-Barrero, N.M., R.P. Ribeiro, R.N. Sirol, J.A. Povh, P.C. Gomes, L. Vargas and D.P. Streit Jr. 2006. Genetic diversity in piracanjuba populations (Brycon orbignyanus) with the RAPD (Random Amplified Polimorphic DNA) markers. Journal Animal Science 84:170.
17. Lopera-Barrero, N.M., D.P. Streit Jr, R.N. Sirol, R.P. Ribeiro, J.A. Povh, L. Vargas, P.C. Gomes, T. da S. Lopes, C.B. Jacometo, and D.V. Blanck. 2007. Monitoramento da diversidade genética dos reprodutores e da progênie de Piaractus mesopotamicus obtida pelo sistema seminatural. P. 31-36-Genética. Em: I Congresso Brasileiro de Produção de Peixes Nativos de Água Doce, Brasil (Resumo).
18. Nam, Y.K., J.E. Park, K.K. Kim, and D.S. Kim. 2003. A rapid and simple PCR-based method for analysis of transgenic fish using a restricted amount of fin tissue. Transgenic Research 12:523-525.
19. Povh, J.A. 2007. Avaliação da diversidade genética e do manejo reprodutivo do pacu, Piaractus mesopotamicus. Tese (Doutorado em Zootecnia), Programa de Pós-Graduação em Zootecnia, Universidade Estadual de Maringá, Maringá, Brasil. 75 p.
20. Povh, J.A., R.P. Ribeiro, R.N. Sirol, D.P. Streit Jr, H.L.M. Moreira, N.M. Lopera Barrero, L. Vargas, P.C. Gomes, C.B. Jacometo, and T. da S. Lopes. 2007. Avaliação reprodutiva e da diversidade genética de Piaractus mesopotamicus no sistema seminatural. p. 7-13-Genética. Em: I Congresso Brasileiro de Produção de Peixes Nativos de Água Doce, Brasil (Resumo).
21. Povh, J.A., H.L.M. Moreira, R.P. Ribeiro, A.P. Prioli, L. Vargas, D.V. Blanck, E. Gasparino, and D.P. Streit Jr. 2005. Estimativa da variabilidade genética em tilápia do Nilo (Oreochromis niloticus) com a técnica de RAPD. Acta Scientiarum Animal Science 27:1-10.
22. Sire, J.Y., M. Girondot, and O. Babiar. 2000. Marking zebrafish, Danio rerio (Cyprinidae), using scale regeneration. Journal of Experimental Zoology 286:297-304.
23. Taberlet, P., L.P. Waits, and G. Luikart. 1999. Noninvasive genetic sampling: look before you leap. Trends in Ecology and Evolution 14:323-327.
24. Vieira, V.P., R.P. Ribeiro, L. Vargas, H.L.M. Moreira, J.A. Povh, and N.M. Lopera-Barrero. 2005. Avaliação da variabilidade genética de linhagens de tilápia do Nilo (Oreochromis niloticus) com o uso do marcador de RAPD. Revista Acadêmica Curitiba 3:41-49.
25. Wasko, A.P., C. Martins, C. Oliveira, and F. Foresti. 2003. Nondestructive genetic sampling in fish. An improved method for DNA extraction from fish fins and scales. Hereditas 138:161-165.
26. Weber, L.P., P.S. Higgins, L.I. Carlson, and D.M. Janz. 2003. Development and validation of methods for measuring multiple biochemical indices of condition in juvenile fishes. Journal of Fish Biology 63:637-658.
27. Williams, J.G., A.R. Kubelik, J. Livak, J.A. Rafalski, and S.V. Tingey. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18:6531-6535.
28. Yue, G.H., and L. Orban. 2001. Rapid Isolation of DNA from Fresh and Preserved Fish Scales for Polymerase Chain Reaction. Marine Biotechnology 3:199-204.