Interplay of bistable kinetics of gene expression during cellular growth

Journal of Physics A: Mathematical and Theoretical

Volumn 42, Issue 6, 2009, Pages

  Zhdanov, Vladimir P ^a,b  

^a CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^b BORESKOV INSTITUTE OF CATALYSIS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 64549096706     PISSN: 17518113     EISSN: 17518121     Source Type: Journal    
DOI: 10.1088/1751-8113/42/6/065102     Document Type: Article

References (31)

1. Alberts B, Johnson A, Lewis J, Raff M, Roberts K and Walter P 2002 Molecular Biology of the Cell (New York: Garland)
2. Amaral P P, Dinger M E, Mercer T R and Mattick J S 2008 The eucariotic genome as an RNA machine Science 319 1787-9
3. Goodrich J A and Kugel J F 2006 Non-coding-RNA regulators of RNA polymerase II transcription Nat. Rev. Mol. Cell Biol. 7 612-6
4. Kaern M, Elston T C, Blake W J and Collins J J 2005 Stochasticity in gene expression: from theories to phenotypes Nat. Rev. Genet. 6 451-64
5. Paulsson J 2005 Models of stochastic gene expression Phys. Life Sci. 2 157-75
6. Kaufmann B B and van Oudenaarden A 2007 Stochastic gene expression: from single molecules to the proteome Curr. Opin. Gen. Dev. 17 107-12
7. Mariani L, Löhning M, Radbruch A and Höfer T 2004 Transcriptional control networks of cell differentiation: insights from helper T lymphocytes Prog. Biophys. Mol. Biol. 86 45-76
8. Zhdanov V P 2008 Bifurcations in the interplay of messenger RNA, protein, and nonprotein coding RNA J. Phys. A: Math. Theor. 41 285101
9. Zhdanov V P 2009 Bistability in gene transcription: Interplay of messenger RNA, protein, and nonprotein coding RNA BioSystems 95 75-81
10. Nakajima A and Kaneko K 2008 Regulative differentiation as bifurcation of interacting cell population J. Theor. Biol. 253 779-87
11. Zhdanov V P 2006 Transient stochastic bistable kinetics of gene transcription during the cellular growth Chem. Phys. Lett. 424 394-8
12. Zhdanov V P 2007 Stochastic bistable kinetics of gene transcription during the cell cycle JETP Lett. 84 632-4
13. Losick R and Desplan C 2008 Stochasticity and cell fate Science 320 65-8
14. Morrison S J and Kimble J 2006 Asymmetric and symmetric stem-cell divisions in development and cancer Nature 441 1068-74
15. Insight: Stem cells 2006 Nature 441 1059-102
16. Viswanathan S and Zandstra P W 2003 Towards predictive models of stem cell fate Cytotechnology 41 75-92
17. Zhdanov V P 2007 Stem cell proliferation and differentiation and stochastic bistability in gene expression. J. Exp. Theor. Phys. 104 162-9
18. Xiong W and Ferrell J E 2003 A positive-feedback-based bistable 'memory module' that governs a cell fate decision Nature 426 460-5
19. Lai K, Robertson M J and Schaffer D V 2004 The sonic hedgehog signaling system as a bistable genetic switch Biophys. J. 86 2748-57
20. Chang H H, Oh P Y, Ingber D E and Huang S 2006 Multistable and multistep dynamics in neutrophil differentiation BMC Cell Biol. 7 11
21. Chickarmane V, Troein C, Nuber U A, Sauro H M and Peterson C 2006 Transcriptional dynamics of the embryonic stem cell switch PLOS Comput. Biol. 2 1080-92
22. Callard R E 2007 Decision-making by the immune response Immunol. Cell Biol. 85 300-5
23. Huang S, Guo Y P, May G and Enver T 2007 Bifurcation dynamics in lineage-commitment in bipotent progenitor cells Dev. Biol. 305 695-713
24. Moore K A and Lemischka I R 2006 Stem cells and their niches Science 311 1880-5
25. Scadden D T 2006 The stem-cell niche as an entity of action Nature 441 1075-9
26. Till J E, Siminovitch L and McCulloch E A 1964 Stochastic model of stem cell proliferation based on growth of spleen colony-forming cells Proc. Natl. Acad. Sci. USA 51 29-36
27. Zhdanov V P 2008 Simulation of proliferation and differentiation of cells in a stem-cell niche Physica A 387 6126-36
28. Gurok U, Steinhoff C, Lipkovitz B, Ropers H-H, Scharff C and Nuber U A 2004 Gene expression changes in the course of neural progenitor cell differentiation J. Neurosci. 24 5982-6002
29. Palmqvist L, Glover C H, Hsu L, Lu M, Bossen B, Piret J M, Humphries R K and Helgason C D 2005 Correlation of murine embryonic stem cell gene expression profiles with functional measures of pluripotency Stem Cells 23 663-80
30. Burdon T, Smith A and Savatier P 2002 Signalling, cell cycle and pluripotency in embryonic stem cells Trends Cell Biol. 12 432-8
31. Gillespie D T 1977 Exact stochastic simulation of coupled chemical reactions J. Phys. Chem. 81 2340-61