메뉴 건너뛰기




Volumn 276, Issue 1658, 2012, Pages 893-902

Range-wide mtDNA phylogeography yields insights into the origins of Asian elephants

Author keywords

Divergent mitochondrial clades; Elephant trade; Elephas fossils; Phylogeography; Pleistocene refugia

Indexed keywords

ALLOPATRY; CLADISTICS; DIVERGENCE; ELEPHANT; GENETIC ANALYSIS; GENETIC STRUCTURE; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY; PLEISTOCENE; POPULATION SIZE; RANGE EXPANSION; VICARIANCE;

EID: 63849223128     PISSN: 09628452     EISSN: 14712954     Source Type: Journal    
DOI: 10.1098/rspb.2008.1494     Document Type: Article
Times cited : (62)

References (50)
  • 2
    • 0014685150 scopus 로고
    • Evolutionary history of the elephant
    • (doi:10.1126/science.164.3886.1366)
    • Aguirre, E. 1969 Evolutionary history of the elephant. Science 20, 1366-1376. (doi:10.1126/science.164.3886.1366)
    • (1969) Science , vol.20 , pp. 1366-1376
    • Aguirre, E.1
  • 3
    • 34250164597 scopus 로고    scopus 로고
    • Genetic structure and extinction of the woolly mammoth Mammuthus primigenius
    • (doi:10.1016/j.cub.2007.05.035)
    • Barnes, I., Shapiro, B., Lister, A., Kuznetsova, T. & Sher, A. 2007 Genetic structure and extinction of the woolly mammoth Mammuthus primigenius. Curr. Biol. 17, 1072-1075. (doi:10.1016/j.cub.2007.05.035)
    • (2007) Curr. Biol , vol.17 , pp. 1072-1075
    • Barnes, I.1    Shapiro, B.2    Lister, A.3    Kuznetsova, T.4    Sher, A.5
  • 4
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • (doi:10.1046/j.1365-294x.2000.01020.x)
    • Clement, M., Posada, D. & Crandall, K. A. 2000 TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9, 1657-1659. (doi:10.1046/j.1365-294x.2000.01020.x).
    • (2000) Mol, Ecol , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 7
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier, L., Smouse, P. & Quattro, J. 1992 Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.2    Quattro, J.3
  • 8
    • 85007110786 scopus 로고    scopus 로고
    • ARLEQUIN ver. 3.0: An integrated software package for population genetics data analysis
    • Excoffier, L., Laval, G. & Schneider, S. 2005 ARLEQUIN ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. 1, 47-50.
    • (2005) Evol. Bioinform , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 9
    • 0034011230 scopus 로고    scopus 로고
    • Mitochondrial DNA variation, phylogeography and population structure of the Asian elephant
    • (doi:10.1046/j.1365-2540.2000.00674.x)
    • Fernando, P., Pfrender, M., Encalada, S. & Lande, R. 2000 Mitochondrial DNA variation, phylogeography and population structure of the Asian elephant. Heredity 84, 362-372. (doi:10.1046/j.1365-2540.2000.00674.x)
    • (2000) Heredity , vol.84 , pp. 362-372
    • Fernando, P.1    Pfrender, M.2    Encalada, S.3    Lande, R.4
  • 10
    • 3142626041 scopus 로고    scopus 로고
    • DNA analysis indicates that Asian elephants are native to Borneo and are therefore a high priority for conservation
    • (doi:10.1371/journal.pbio.0000006)
    • Fernando, P. et al. 2003 DNA analysis indicates that Asian elephants are native to Borneo and are therefore a high priority for conservation. PLoS Biol. 1, 110-115. (doi:10. 1371/journal.pbio.0000006)
    • (2003) PLoS Biol , vol.1 , pp. 110-115
    • Fernando, P.1
  • 11
    • 0034764050 scopus 로고    scopus 로고
    • Phylogeography of the Asian elephant (Elephas maximus) based on mitochondrial DNA
    • Fleischer, R., Perry, E., Muralidharan, K., Stevens, E. & Wemmer, C. 2001 Phylogeography of the Asian elephant (Elephas maximus) based on mitochondrial DNA. Evolution 55, 1882-1892.
    • (2001) Evolution , vol.55 , pp. 1882-1892
    • Fleischer, R.1    Perry, E.2    Muralidharan, K.3    Stevens, E.4    Wemmer, C.5
  • 12
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier, N., Gouy, M. & Gautier, C. 1996 SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Cabios 12, 543-548.
    • (1996) Cabios , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 13
    • 0036551776 scopus 로고    scopus 로고
    • Quaternary rainforest refugia in South-East Asia: Using termites (Isoptera) as indicators
    • (doi:10.1046/, j.1095-8312.2002.00031.x)
    • Gathorne-Hardy, F. J., Syaukani, Davies, R. G., Eggleton, P. & Jones, D. T. 2002 Quaternary rainforest refugia in South-East Asia: using termites (Isoptera) as indicators. Biol. J. Linn. Soc. Lond. 75, 453-466. (doi:10.1046/j.1095-8312.2002.00031.x)
    • (2002) Biol. J. Linn. Soc. Lond , vol.75 , pp. 453-466
    • Gathorne-Hardy, F.J.1    Syaukani2    Davies, R.G.3    Eggleton, P.4    Jones, D.T.5
  • 14
    • 85020730179 scopus 로고    scopus 로고
    • Gene Codes Corporation, Ann Arbor, MI: Gene Codes Corporation
    • Gene Codes Corporation 1999 SEQUENCHER: a genetic analysis software. V. 3.1.1. Ann Arbor, MI: Gene Codes Corporation.
    • (1999) SEQUENCHER: A Genetic Analysis Software , vol.3 , Issue.1 , pp. 1
  • 16
    • 46149124355 scopus 로고    scopus 로고
    • Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes
    • (doi:10.1073/pnas.0802315105)
    • Gilbert, M. T. P., Drautz, D. I., Lesk, A. M., Ho, S. Y. W. & Qi, J. 2008 Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes. Proc. Natl Acad. Sci. USA 105, 8327-8332. (doi:10.1073/pnas.0802315105)
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 8327-8332
    • Gilbert, M.T.P.1    Drautz, D.I.2    Lesk, A.M.3    Ho, S.Y.W.4    Qi, J.5
  • 17
    • 0029820951 scopus 로고    scopus 로고
    • Population genetics and systematics of Asian elephants (Elephas maximus): A study based on sequence variation at the Cyt b gene of PCRamplified mitochondrial DNA from hair bulbs
    • Hartl, G., Kurt, F., Tiedemann, R., Gmeiner, C., Nadlinger, K., Mar, K. U. & Rubel, A. 1996 Population genetics and systematics of Asian elephants (Elephas maximus): a study based on sequence variation at the Cyt b gene of PCRamplified mitochondrial DNA from hair bulbs. Z. Saugetierkd. 61, 285-294.
    • (1996) Z, Saugetierkd , vol.61 , pp. 285-294
    • Hartl, G.1    Kurt, F.2    Tiedemann, R.3    Gmeiner, C.4    Nadlinger, K.5    Mar, K.U.6    Rubel, A.7
  • 18
    • 0034702196 scopus 로고    scopus 로고
    • The genetic legacy of the Quaternary ice ages
    • (doi:10.1038/35016000)
    • Hewitt, G. 2000 The genetic legacy of the Quaternary ice ages. Nature 405, 907-913. (doi:10.1038/35016000)
    • (2000) Nature , vol.405 , pp. 907-913
    • Hewitt, G.1
  • 19
    • 21244501806 scopus 로고    scopus 로고
    • Phylogeography, genetic structure, and diversity in the dhole (Cuon alpinus)
    • (doi:10.1111/j.1365-294X.2005. 02582.x)
    • Iyengar, A., Babu, V. N., Hedges, S., Venkataraman, A. B., Maclean, N. & Morin, P. A. 2005 Phylogeography, genetic structure, and diversity in the dhole (Cuon alpinus). Mol. Ecol. 14, 2281-2297. (doi:10.1111/j.1365-294X.2005. 02582.x)
    • (2005) Mol. Ecol , vol.14 , pp. 2281-2297
    • Iyengar, A.1    Babu, V.N.2    Hedges, S.3    Venkataraman, A.B.4    Maclean, N.5    Morin, P.A.6
  • 20
    • 0034808161 scopus 로고    scopus 로고
    • Mitochondrial DNA Variation and Biogeography of Eastern Gorillas
    • (doi:10.1046/j.0962-1083. 2001.01365.x)
    • Jensen-Seaman, M. & Kidd, K. 2001 Mitochondrial DNA variation and biogeography of eastern gorillas. Mol. Ecol. 10, 2241-2247. (doi:10.1046/j.0962-1083. 2001.01365.x)
    • (2001) Mol. Ecol , vol.10 , pp. 2241-2247
    • Jensen-Seaman, M.1    Kidd, K.2
  • 22
    • 32544451176 scopus 로고    scopus 로고
    • Multiplex Amplification of the Mammoth Mitochondrial Genome and The Evolution of Elephantidae
    • (doi:10.1038/ nature04432)
    • Krause, J. et al. 2006 Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae. Nature 439, 724-727. (doi:10.1038/ nature04432)
    • (2006) Nature , vol.439 , pp. 724-727
    • Krause, J.1
  • 24
    • 0002527349 scopus 로고
    • Origin and evolution of the Elephantidae
    • (doi:10.2307/1006229)
    • Maglio, V. J. 1973 Origin and evolution of the Elephantidae. Trans. Am. Phil. Soc. 63, 1-149. (doi:10.2307/1006229).
    • (1973) Trans. Am. Phil. Soc , vol.63 , pp. 1-149
    • Maglio, V.J.1
  • 25
    • 0027536811 scopus 로고
    • mtDNA diversity in rhesus monkeys reveals overestimates of divergence time and paraphyly with neighboring species
    • Melnick, D. J., Hoelzer, G. A., Absher, R. & Ashley, M. V. 1993 mtDNA diversity in rhesus monkeys reveals overestimates of divergence time and paraphyly with neighboring species. Mol. Biol. Evol. 10, 282-295.
    • (1993) Mol. Biol. Evol , vol.10 , pp. 282-295
    • Melnick, D.J.1    Hoelzer, G.A.2    Absher, R.3    Ashley, M.V.4
  • 26
    • 0037202666 scopus 로고    scopus 로고
    • Upper Siwalik mammalian faunas of India and associated events
    • (doi:10.1016/S1367-9120(02)00013-5)
    • Nanda, A. C. 2002 Upper Siwalik mammalian faunas of India and associated events. J. Asian Earth Sci. 21, 47-58. (doi:10.1016/S1367-9120(02)00013-5)
    • (2002) J. Asian Earth Sci , vol.21 , pp. 47-58
    • Nanda, A.C.1
  • 27
    • 55949103897 scopus 로고    scopus 로고
    • Comments on the Pinjor Mammalian Fauna of the Siwalik Group in relation to the post-Siwalik faunas of Peninsular India and Indo-Gangetic Plain
    • (doi:10.1016/j.quaint.2007.06.022)
    • Nanda, A. C. 2008 Comments on the Pinjor Mammalian Fauna of the Siwalik Group in relation to the post-Siwalik faunas of Peninsular India and Indo-Gangetic Plain. Quat. Int. 192, 6-13. (doi:10.1016/j.quaint.2007.06.022)
    • (2008) Quat. Int , vol.192 , pp. 6-13
    • Nanda, A.C.1
  • 29
    • 34249797574 scopus 로고    scopus 로고
    • The Automation and Evaluation of Nested Clade Phylogeographic Analysis
    • (doi:10.1111/j.1558-5646. 2007.00124.x)
    • Panchal, M. & Beaumont, M. A. 2007 The automation and evaluation of nested clade phylogeographic analysis. Evolution 61, 1466-1480. (doi:10.1111/j.1558-5646. 2007.00124.x)
    • (2007) Evolution , vol.61 , pp. 1466-1480
    • Panchal, M.1    Beaumont, M.A.2
  • 30
    • 0034100234 scopus 로고    scopus 로고
    • GEODIS: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes
    • (doi:10.1046/j.1365-294x.2000.00887.x)
    • Posada, D., Crandall, K. A. & Templeton, A. R. 2000 GEODIS: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol. 9, 487-488. (doi:10.1046/j.1365-294x.2000.00887.x)
    • (2000) Mol. Ecol , vol.9 , pp. 487-488
    • Posada, D.1    Crandall, K.A.2    Templeton, A.R.3
  • 31
    • 55949126911 scopus 로고
    • On the occurrence of Hypselephas hysudricus in the Pleistocene deposits of Tirunelveli valley, Madras State
    • Prasad, K. N. & Daniel, J. A. 1968 On the occurrence of Hypselephas hysudricus in the Pleistocene deposits of Tirunelveli valley, Madras State. Curr. Sci. 37, 516-517.
    • (1968) Curr. Sci , vol.37 , pp. 516-517
    • Prasad, K.N.1    Daniel, J.A.2
  • 32
    • 11244270692 scopus 로고    scopus 로고
    • Cytonuclear genomic dissociation in African elephant species
    • Roca, A. L., Georgiadis, N. & O'Brien, S. J. 2005 Cytonuclear genomic dissociation in African elephant species. Nat. Genet. 37, 96-100.
    • (2005) Nat. Genet , vol.37 , pp. 96-100
    • Roca, A.L.1    Georgiadis, N.2    O'Brien, S.J.3
  • 33
    • 38549123479 scopus 로고    scopus 로고
    • The mastodon mitochondrial genome: A mammoth accomplishment
    • (doi:10.1016/j.tig.2007.11.005)
    • Roca, A. L. 2008 The mastodon mitochondrial genome: a mammoth accomplishment. Trends Genet. 24, 49-52. (doi:10.1016/j.tig.2007.11.005)
    • (2008) Trends Genet , vol.24 , pp. 49-52
    • Roca, A.L.1
  • 35
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers, A. R. & Harpending, H. 1992 Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9, 552-569.
    • (1992) Mol. Biol. Evol , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 36
    • 34548223646 scopus 로고    scopus 로고
    • Proboscidean Mitogenomics: Chronology and Mode of Elephant Evolution Using Mastodon As Outgroup
    • (doi:10.1371/journal.pbio.0050207)
    • Rohland, N., Malaspinas, A., Pollack, J. L., Slatkin, M., Matheus, P. & Hofreiter, M. 2007 Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup. PLoS Biol. 5, 1663-1671. (doi:10.1371/journal.pbio.0050207)
    • (2007) PLoS Biol , vol.5 , pp. 1663-1671
    • Rohland, N.1    Malaspinas, A.2    Pollack, J.L.3    Slatkin, M.4    Matheus, P.5    Hofreiter, M.6
  • 37
    • 0004135534 scopus 로고    scopus 로고
    • Uppsala, Sweden: Uppsala University. See ftp.uu.se or ftp.systbot.uu.se
    • Ronquist, F. 1996 DIVA v. 1.1. Uppsala, Sweden: Uppsala University. See ftp.uu.se or ftp.systbot.uu.se.
    • (1996) DIVA , pp. 1
    • Ronquist, F.1
  • 38
    • 84856555314 scopus 로고
    • Upper Pliocene-Quaternary vertebrate communities of the Karewas and Siwaliks
    • Sahni, A. & Kotlia, B. S. 1993 Upper Pliocene-Quaternary vertebrate communities of the Karewas and Siwaliks. Curr. Sci. 64, 893-898.
    • (1993) Curr. Sci , vol.64 , pp. 893-898
    • Sahni, A.1    Kotlia, B.S.2
  • 39
    • 0006111662 scopus 로고    scopus 로고
    • The Pliocene-Pleistocene boundary in the Indian subcontinent
    • (ed. J. A. Van Couvering, Cambridge, UK: Cambridge University Press)
    • Sastry, M. V. A. 1997 The Pliocene-Pleistocene boundary in the Indian subcontinent. In The Pleistocene boundary and the beginning of the Quaternary (ed. J. A. Van Couvering), pp. 232-238. Cambridge, UK: Cambridge University Press.
    • (1997) The Pleistocene Boundary and the Beginning of The Quaternary , pp. 232-238
    • Sastry, M.V.A.1
  • 40
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA
    • Schneider, S. & Excoffier, L. 1999 Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152, 1079-1089.
    • (1999) Genetics , vol.152 , pp. 1079-1089
    • Schneider, S.1    Excoffier, L.2
  • 41
    • 84863393813 scopus 로고
    • Quaternary climatic changes indicated by planktonic foraminifera of northern Indian Ocean
    • Singh, A. D. & Srinivasan, M. S. 1993 Quaternary climatic changes indicated by planktonic foraminifera of northern Indian Ocean. Curr. Sci. 64, 908-915.
    • (1993) Curr. Sci , vol.64 , pp. 908-915
    • Singh, A.D.1    Srinivasan, M.S.2
  • 42
    • 0346270919 scopus 로고    scopus 로고
    • The living elephants: Evolutionary ecology, behavior
    • New York, NY: Oxford University Press
    • Sukumar, R. 2003 The living elephants: evolutionary ecology, behavior, and conservation. New York, NY: Oxford University Press.
    • (2003) And Conservation
    • Sukumar, R.1
  • 44
    • 0028254128 scopus 로고
    • Mitochondrial DNA polymorphism, phylogeography, and conservation genetics of the brown bear Ursus arctos in Europe
    • (doi:10.1098/rspb.1994.0028)
    • Taberlet, P. & Bouvet, J. 1994 Mitochondrial DNA polymorphism, phylogeography, and conservation genetics of the brown bear Ursus arctos in Europe. Proc. R. Soc. B 255, 195-200. (doi:10.1098/rspb.1994.0028).
    • (1994) Proc. R. Soc. B , vol.255 , pp. 195-200
    • Taberlet, P.1    Bouvet, J.2
  • 45
    • 0032055149 scopus 로고    scopus 로고
    • Nested clade analyses of phylogeographic data: Testing hypotheses about gene flow and population history
    • (doi:10.1046/ j.1365-294x.1998.00308.x)
    • Templeton, A. R. 1998 Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol. Ecol. 7, 381-397. (doi:10.1046/ j.1365-294x.1998.00308.x)
    • (1998) Mol. Ecol , vol.7 , pp. 381-397
    • Templeton, A.R.1
  • 46
    • 0035047252 scopus 로고    scopus 로고
    • Using phylogeographic analyses of gene trees to test species status and processes
    • (doi:10.1046/j.1365-294x.2001. 01199.x)
    • Templeton, A. R. 2001 Using phylogeographic analyses of gene trees to test species status and processes. Mol. Ecol. 10, 779-791. (doi:10.1046/j.1365-294x.2001. 01199.x)
    • (2001) Mol. Ecol , vol.10 , pp. 779-791
    • Templeton, A.R.1
  • 47
    • 1642339467 scopus 로고    scopus 로고
    • Statistical Phylogeography: Methods of Evaluating and Minimizing Inference Errors
    • (doi:10.1046/j.1365-294X. 2003.02041.x)
    • Templeton, A. R. 2004 Statistical phylogeography: methods of evaluating and minimizing inference errors. Mol. Ecol. 13, 789-809. (doi:10.1046/j.1365-294X. 2003.02041.x)
    • (2004) Mol. Ecol , vol.13 , pp. 789-809
    • Templeton, A.R.1
  • 49
    • 31544448821 scopus 로고    scopus 로고
    • Population Genetic Structure and Conservation of Asian Elephants (Elephas Maximus) Across India
    • (doi:10.1017/S1367943 005002428)
    • Vidya, T. N. C., Fernando, P., Melnick, D. J. & Sukumar, R. 2005 Population genetic structure and conservation of Asian elephants (Elephas maximus) across India. Anim. Conserv. 8, 377-388. (doi:10.1017/S1367943 005002428)
    • (2005) Anim. Conserv , vol.8 , pp. 377-388
    • Vidya, T.N.C.1    Fernando, P.2    Melnick, D.J.3    Sukumar, R.4
  • 50
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • (doi:10.2307/2408641)
    • Weir, B. S. & Cockerham, C. C. 1984 Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370. (doi:10.2307/2408641)
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.